Experiment: Low light with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0168 and Rru_A0169 overlap by 8 nucleotides Rru_A0169 and Rru_A0170 are separated by 5 nucleotides Rru_A0170 and Rru_A0171 overlap by 4 nucleotides Rru_A0171 and Rru_A0172 are separated by 4 nucleotides
Rru_A0168: Rru_A0168 - CRISPR-associated protein, Cas2 (NCBI), at 200,012 to 200,293
_A0168
Rru_A0169: Rru_A0169 - Protein of unknown function DUF48 (NCBI), at 200,286 to 201,227
_A0169
Rru_A0170: Rru_A0170 - CRISPR-associated protein, CT1974 (NCBI), at 201,233 to 201,895
_A0170
Rru_A0171: Rru_A0171 - CRISPR-associated protein, CT1976 (NCBI), at 201,892 to 202,677
_A0171
Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761
_A0172
Position (kb) 201
202 Strain fitness (log2 ratio) -2
-1
0
1 at 200.549 kb on + strand, within Rru_A0169 at 200.549 kb on + strand, within Rru_A0169 at 200.549 kb on + strand, within Rru_A0169 at 200.549 kb on + strand, within Rru_A0169 at 200.549 kb on + strand, within Rru_A0169 at 200.550 kb on - strand, within Rru_A0169 at 200.550 kb on - strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.551 kb on + strand, within Rru_A0169 at 200.552 kb on - strand, within Rru_A0169 at 200.570 kb on - strand, within Rru_A0169 at 200.570 kb on - strand, within Rru_A0169 at 200.725 kb on + strand, within Rru_A0169 at 200.752 kb on + strand, within Rru_A0169 at 200.753 kb on - strand, within Rru_A0169 at 200.774 kb on - strand, within Rru_A0169 at 200.774 kb on - strand, within Rru_A0169 at 200.774 kb on - strand, within Rru_A0169 at 200.860 kb on + strand, within Rru_A0169 at 200.860 kb on + strand, within Rru_A0169 at 200.922 kb on + strand, within Rru_A0169 at 200.922 kb on + strand, within Rru_A0169 at 200.922 kb on + strand, within Rru_A0169 at 200.923 kb on - strand, within Rru_A0169 at 200.923 kb on - strand, within Rru_A0169 at 200.923 kb on - strand, within Rru_A0169 at 201.138 kb on + strand at 201.234 kb on + strand at 201.235 kb on - strand at 201.235 kb on - strand at 201.235 kb on - strand at 201.273 kb on + strand at 201.273 kb on + strand at 201.274 kb on - strand at 201.351 kb on + strand, within Rru_A0170 at 201.352 kb on - strand, within Rru_A0170 at 201.352 kb on - strand, within Rru_A0170 at 201.352 kb on - strand, within Rru_A0170 at 201.651 kb on + strand, within Rru_A0170 at 201.651 kb on + strand, within Rru_A0170 at 201.651 kb on + strand, within Rru_A0170 at 201.651 kb on + strand, within Rru_A0170 at 201.717 kb on + strand, within Rru_A0170 at 201.718 kb on - strand, within Rru_A0170 at 201.886 kb on + strand at 201.887 kb on - strand at 201.887 kb on - strand at 201.887 kb on - strand at 202.142 kb on + strand, within Rru_A0171 at 202.142 kb on + strand, within Rru_A0171 at 202.229 kb on + strand, within Rru_A0171 at 202.337 kb on + strand, within Rru_A0171 at 202.442 kb on + strand, within Rru_A0171 at 202.443 kb on - strand, within Rru_A0171 at 202.555 kb on + strand, within Rru_A0171 at 202.683 kb on + strand at 202.683 kb on + strand at 202.684 kb on - strand at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172
Per-strain Table
Position Strand Gene LocusTag Fraction Low light with N2 remove 200,549 + Rru_A0169 0.28 +0.3 200,549 + Rru_A0169 0.28 +0.1 200,549 + Rru_A0169 0.28 +0.1 200,549 + Rru_A0169 0.28 +0.3 200,549 + Rru_A0169 0.28 -0.3 200,550 - Rru_A0169 0.28 -1.0 200,550 - Rru_A0169 0.28 -0.3 200,551 + Rru_A0169 0.28 -0.0 200,551 + Rru_A0169 0.28 +0.2 200,551 + Rru_A0169 0.28 -0.3 200,551 + Rru_A0169 0.28 -0.2 200,551 + Rru_A0169 0.28 -1.2 200,551 + Rru_A0169 0.28 -0.6 200,551 + Rru_A0169 0.28 -0.6 200,551 + Rru_A0169 0.28 -0.2 200,551 + Rru_A0169 0.28 +0.9 200,552 - Rru_A0169 0.28 +0.6 200,570 - Rru_A0169 0.30 -0.8 200,570 - Rru_A0169 0.30 -0.1 200,725 + Rru_A0169 0.47 -1.0 200,752 + Rru_A0169 0.49 -0.5 200,753 - Rru_A0169 0.50 +0.0 200,774 - Rru_A0169 0.52 +0.9 200,774 - Rru_A0169 0.52 -0.5 200,774 - Rru_A0169 0.52 +0.7 200,860 + Rru_A0169 0.61 -0.8 200,860 + Rru_A0169 0.61 -0.1 200,922 + Rru_A0169 0.68 -0.2 200,922 + Rru_A0169 0.68 +0.0 200,922 + Rru_A0169 0.68 +0.1 200,923 - Rru_A0169 0.68 -1.1 200,923 - Rru_A0169 0.68 -0.2 200,923 - Rru_A0169 0.68 +0.3 201,138 + -0.1 201,234 + +0.1 201,235 - -0.2 201,235 - -0.3 201,235 - +0.4 201,273 + -0.3 201,273 + -0.2 201,274 - -0.4 201,351 + Rru_A0170 0.18 -0.9 201,352 - Rru_A0170 0.18 -0.4 201,352 - Rru_A0170 0.18 -0.5 201,352 - Rru_A0170 0.18 -0.0 201,651 + Rru_A0170 0.63 -0.6 201,651 + Rru_A0170 0.63 +0.9 201,651 + Rru_A0170 0.63 +0.2 201,651 + Rru_A0170 0.63 -1.5 201,717 + Rru_A0170 0.73 +0.2 201,718 - Rru_A0170 0.73 -0.0 201,886 + -0.3 201,887 - -0.5 201,887 - -0.0 201,887 - +0.1 202,142 + Rru_A0171 0.32 -0.2 202,142 + Rru_A0171 0.32 -0.5 202,229 + Rru_A0171 0.43 -0.2 202,337 + Rru_A0171 0.57 -0.2 202,442 + Rru_A0171 0.70 +0.2 202,443 - Rru_A0171 0.70 +1.0 202,555 + Rru_A0171 0.84 +0.9 202,683 + +0.0 202,683 + -2.6 202,684 - -0.3 202,794 + Rru_A0172 0.10 +0.7 202,794 + Rru_A0172 0.10 +0.3 202,794 + Rru_A0172 0.10 -0.3 202,795 - Rru_A0172 0.10 -0.2 202,795 - Rru_A0172 0.10 +0.9
Or see this region's nucleotide sequence