Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_825

Experiment: dimethyl sulfone 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_824 and Pf6N2E2_825 are separated by 15 nucleotidesPf6N2E2_825 and Pf6N2E2_826 are separated by 284 nucleotides Pf6N2E2_824 - Multidrug efflux transporter MexF, at 959,978 to 963,157 _824 Pf6N2E2_825 - Multidrug efflux membrane fusion protein MexE, at 963,173 to 964,426 _825 Pf6N2E2_826 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 964,711 to 965,301 _826 Position (kb) 963 964 965Strain fitness (log2 ratio) -2 -1 0 1 2 3at 962.181 kb on + strand, within Pf6N2E2_824at 962.182 kb on - strand, within Pf6N2E2_824at 962.182 kb on - strand, within Pf6N2E2_824at 962.426 kb on + strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.605 kb on - strand, within Pf6N2E2_824at 962.636 kb on + strand, within Pf6N2E2_824at 962.636 kb on + strand, within Pf6N2E2_824at 962.682 kb on + strand, within Pf6N2E2_824at 962.682 kb on + strand, within Pf6N2E2_824at 962.683 kb on - strand, within Pf6N2E2_824at 962.683 kb on - strand, within Pf6N2E2_824at 962.694 kb on + strand, within Pf6N2E2_824at 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 963.268 kb on + strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.537 kb on + strand, within Pf6N2E2_825at 963.537 kb on + strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.541 kb on + strand, within Pf6N2E2_825at 963.541 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.571 kb on - strand, within Pf6N2E2_825at 963.585 kb on + strand, within Pf6N2E2_825at 963.586 kb on - strand, within Pf6N2E2_825at 963.711 kb on + strand, within Pf6N2E2_825at 963.711 kb on + strand, within Pf6N2E2_825at 963.712 kb on - strand, within Pf6N2E2_825at 963.759 kb on + strand, within Pf6N2E2_825at 963.759 kb on + strand, within Pf6N2E2_825at 963.760 kb on - strand, within Pf6N2E2_825at 963.792 kb on + strand, within Pf6N2E2_825at 963.798 kb on + strand, within Pf6N2E2_825at 963.799 kb on - strand, within Pf6N2E2_825at 964.118 kb on + strand, within Pf6N2E2_825at 964.119 kb on - strand, within Pf6N2E2_825at 964.299 kb on - strand, within Pf6N2E2_825at 964.299 kb on - strand, within Pf6N2E2_825at 964.299 kb on - strand, within Pf6N2E2_825at 964.430 kb on + strandat 964.507 kb on + strandat 964.508 kb on - strandat 964.511 kb on + strandat 964.511 kb on + strandat 964.511 kb on + strandat 964.511 kb on + strandat 964.526 kb on + strandat 964.526 kb on + strandat 964.526 kb on + strandat 964.526 kb on + strandat 964.526 kb on + strandat 964.526 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.528 kb on + strandat 964.529 kb on - strandat 964.548 kb on + strandat 964.562 kb on + strandat 964.562 kb on + strandat 964.562 kb on + strandat 964.563 kb on - strandat 964.713 kb on - strandat 964.724 kb on + strandat 964.737 kb on + strandat 964.737 kb on + strandat 964.738 kb on - strandat 964.829 kb on + strand, within Pf6N2E2_826at 964.829 kb on + strand, within Pf6N2E2_826at 964.982 kb on + strand, within Pf6N2E2_826at 964.982 kb on + strand, within Pf6N2E2_826at 964.983 kb on - strand, within Pf6N2E2_826at 964.983 kb on - strand, within Pf6N2E2_826at 964.983 kb on - strand, within Pf6N2E2_826at 965.020 kb on - strand, within Pf6N2E2_826at 965.061 kb on - strand, within Pf6N2E2_826at 965.242 kb on + strand, within Pf6N2E2_826at 965.242 kb on + strand, within Pf6N2E2_826at 965.242 kb on + strand, within Pf6N2E2_826at 965.242 kb on + strand, within Pf6N2E2_826at 965.242 kb on + strand, within Pf6N2E2_826at 965.243 kb on - strandat 965.243 kb on - strandat 965.243 kb on - strandat 965.243 kb on - strandat 965.243 kb on - strandat 965.255 kb on - strandat 965.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
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962,181 + Pf6N2E2_824 0.69 +2.0
962,182 - Pf6N2E2_824 0.69 +1.1
962,182 - Pf6N2E2_824 0.69 +1.2
962,426 + Pf6N2E2_824 0.77 +2.1
962,427 - Pf6N2E2_824 0.77 +1.6
962,427 - Pf6N2E2_824 0.77 +2.9
962,427 - Pf6N2E2_824 0.77 +1.2
962,427 - Pf6N2E2_824 0.77 +1.0
962,605 - Pf6N2E2_824 0.83 +1.1
962,636 + Pf6N2E2_824 0.84 +1.8
962,636 + Pf6N2E2_824 0.84 +1.8
962,682 + Pf6N2E2_824 0.85 +1.3
962,682 + Pf6N2E2_824 0.85 +1.3
962,683 - Pf6N2E2_824 0.85 +2.1
962,683 - Pf6N2E2_824 0.85 +1.1
962,694 + Pf6N2E2_824 0.85 +1.5
962,922 + +1.5
962,922 + +0.5
962,922 + +1.0
962,922 + +0.8
962,922 + +0.3
962,922 + +1.3
962,922 + -1.0
962,922 + +1.2
962,922 + +2.3
962,922 + +0.1
962,923 - +0.3
962,923 - +1.1
962,923 - +1.0
962,923 - +1.7
962,923 - +1.3
962,923 - +1.1
963,268 + +1.5
963,269 - +1.2
963,269 - +0.9
963,269 - +0.7
963,269 - +0.7
963,537 + Pf6N2E2_825 0.29 +1.7
963,537 + Pf6N2E2_825 0.29 +1.0
963,538 - Pf6N2E2_825 0.29 -0.5
963,538 - Pf6N2E2_825 0.29 +0.7
963,538 - Pf6N2E2_825 0.29 -0.6
963,538 - Pf6N2E2_825 0.29 +0.7
963,538 - Pf6N2E2_825 0.29 +0.3
963,541 + Pf6N2E2_825 0.29 +2.3
963,541 + Pf6N2E2_825 0.29 +0.9
963,570 + Pf6N2E2_825 0.32 +2.1
963,570 + Pf6N2E2_825 0.32 +1.7
963,570 + Pf6N2E2_825 0.32 +1.5
963,570 + Pf6N2E2_825 0.32 +1.3
963,571 - Pf6N2E2_825 0.32 +1.0
963,585 + Pf6N2E2_825 0.33 +1.0
963,586 - Pf6N2E2_825 0.33 +2.2
963,711 + Pf6N2E2_825 0.43 +0.8
963,711 + Pf6N2E2_825 0.43 +1.3
963,712 - Pf6N2E2_825 0.43 +1.2
963,759 + Pf6N2E2_825 0.47 -1.2
963,759 + Pf6N2E2_825 0.47 +1.1
963,760 - Pf6N2E2_825 0.47 +1.0
963,792 + Pf6N2E2_825 0.49 -1.6
963,798 + Pf6N2E2_825 0.50 +0.9
963,799 - Pf6N2E2_825 0.50 +1.4
964,118 + Pf6N2E2_825 0.75 +1.1
964,119 - Pf6N2E2_825 0.75 +2.2
964,299 - Pf6N2E2_825 0.90 +1.2
964,299 - Pf6N2E2_825 0.90 +0.9
964,299 - Pf6N2E2_825 0.90 +3.3
964,430 + +0.5
964,507 + +0.6
964,508 - +0.7
964,511 + +1.9
964,511 + -1.6
964,511 + +1.0
964,511 + -0.0
964,526 + +1.2
964,526 + +1.2
964,526 + +0.3
964,526 + +2.2
964,526 + +1.0
964,526 + +0.5
964,528 + +2.2
964,528 + -0.8
964,528 + +0.3
964,528 + -0.1
964,528 + +1.1
964,528 + +1.1
964,528 + -0.1
964,528 + +0.4
964,528 + +1.7
964,528 + +1.0
964,528 + +0.9
964,528 + -0.3
964,528 + +1.9
964,528 + +0.2
964,529 - +1.0
964,548 + +0.3
964,562 + +1.4
964,562 + +0.8
964,562 + +1.0
964,563 - -0.7
964,713 - -0.1
964,724 + +1.2
964,737 + +1.7
964,737 + +0.2
964,738 - -0.2
964,829 + Pf6N2E2_826 0.20 +0.4
964,829 + Pf6N2E2_826 0.20 +1.1
964,982 + Pf6N2E2_826 0.46 -1.8
964,982 + Pf6N2E2_826 0.46 -0.3
964,983 - Pf6N2E2_826 0.46 -0.8
964,983 - Pf6N2E2_826 0.46 -0.6
964,983 - Pf6N2E2_826 0.46 +0.5
965,020 - Pf6N2E2_826 0.52 -0.6
965,061 - Pf6N2E2_826 0.59 +0.2
965,242 + Pf6N2E2_826 0.90 +0.5
965,242 + Pf6N2E2_826 0.90 -0.9
965,242 + Pf6N2E2_826 0.90 +0.8
965,242 + Pf6N2E2_826 0.90 +0.5
965,242 + Pf6N2E2_826 0.90 -1.8
965,243 - +2.0
965,243 - -0.6
965,243 - +2.5
965,243 - +0.3
965,243 - +1.5
965,255 - -2.6
965,255 - -0.1

Or see this region's nucleotide sequence