Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_789

Experiment: dimethyl sulfone 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_788 and Pf6N2E2_789 are separated by 283 nucleotidesPf6N2E2_789 and Pf6N2E2_790 are separated by 235 nucleotides Pf6N2E2_788 - hypothetical protein, at 907,370 to 909,799 _788 Pf6N2E2_789 - hypothetical protein, at 910,083 to 911,894 _789 Pf6N2E2_790 - hypothetical protein, at 912,130 to 914,553 _790 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1at 909.356 kb on + strand, within Pf6N2E2_788at 909.357 kb on - strand, within Pf6N2E2_788at 909.362 kb on + strand, within Pf6N2E2_788at 909.362 kb on + strand, within Pf6N2E2_788at 909.362 kb on + strand, within Pf6N2E2_788at 909.426 kb on - strand, within Pf6N2E2_788at 909.804 kb on + strandat 909.804 kb on + strandat 909.805 kb on - strandat 909.879 kb on + strandat 909.889 kb on - strandat 909.889 kb on - strandat 909.998 kb on - strandat 910.182 kb on + strandat 910.182 kb on + strandat 910.183 kb on - strandat 910.183 kb on - strandat 910.276 kb on - strand, within Pf6N2E2_789at 910.276 kb on - strand, within Pf6N2E2_789at 910.383 kb on + strand, within Pf6N2E2_789at 910.383 kb on + strand, within Pf6N2E2_789at 910.383 kb on + strand, within Pf6N2E2_789at 910.384 kb on - strand, within Pf6N2E2_789at 910.384 kb on - strand, within Pf6N2E2_789at 910.444 kb on - strand, within Pf6N2E2_789at 910.464 kb on - strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.589 kb on + strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.590 kb on - strand, within Pf6N2E2_789at 910.640 kb on + strand, within Pf6N2E2_789at 910.676 kb on + strand, within Pf6N2E2_789at 910.743 kb on - strand, within Pf6N2E2_789at 910.743 kb on - strand, within Pf6N2E2_789at 910.761 kb on + strand, within Pf6N2E2_789at 910.761 kb on + strand, within Pf6N2E2_789at 910.818 kb on - strand, within Pf6N2E2_789at 910.932 kb on + strand, within Pf6N2E2_789at 910.932 kb on + strand, within Pf6N2E2_789at 910.933 kb on - strand, within Pf6N2E2_789at 910.933 kb on - strand, within Pf6N2E2_789at 910.966 kb on + strand, within Pf6N2E2_789at 910.966 kb on + strand, within Pf6N2E2_789at 910.967 kb on - strand, within Pf6N2E2_789at 910.967 kb on - strand, within Pf6N2E2_789at 910.967 kb on - strand, within Pf6N2E2_789at 910.967 kb on - strand, within Pf6N2E2_789at 910.968 kb on + strand, within Pf6N2E2_789at 910.968 kb on + strand, within Pf6N2E2_789at 910.968 kb on + strand, within Pf6N2E2_789at 910.968 kb on + strand, within Pf6N2E2_789at 910.968 kb on + strand, within Pf6N2E2_789at 910.969 kb on - strand, within Pf6N2E2_789at 910.969 kb on - strand, within Pf6N2E2_789at 910.969 kb on - strand, within Pf6N2E2_789at 910.969 kb on - strand, within Pf6N2E2_789at 910.969 kb on - strand, within Pf6N2E2_789at 911.100 kb on + strand, within Pf6N2E2_789at 911.101 kb on - strand, within Pf6N2E2_789at 911.101 kb on - strand, within Pf6N2E2_789at 911.107 kb on - strand, within Pf6N2E2_789at 911.175 kb on + strand, within Pf6N2E2_789at 911.205 kb on + strand, within Pf6N2E2_789at 911.570 kb on + strand, within Pf6N2E2_789at 911.692 kb on + strand, within Pf6N2E2_789at 911.702 kb on + strand, within Pf6N2E2_789at 911.742 kb on + strandat 911.746 kb on - strandat 911.754 kb on + strandat 911.757 kb on - strandat 911.816 kb on + strandat 912.204 kb on + strandat 912.215 kb on - strandat 912.223 kb on + strandat 912.223 kb on + strandat 912.223 kb on + strandat 912.663 kb on + strand, within Pf6N2E2_790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
remove
909,356 + Pf6N2E2_788 0.82 -0.1
909,357 - Pf6N2E2_788 0.82 +1.7
909,362 + Pf6N2E2_788 0.82 -2.1
909,362 + Pf6N2E2_788 0.82 +0.1
909,362 + Pf6N2E2_788 0.82 +0.1
909,426 - Pf6N2E2_788 0.85 -0.7
909,804 + +0.7
909,804 + +0.5
909,805 - -0.5
909,879 + -1.5
909,889 - +1.1
909,889 - -0.0
909,998 - +1.5
910,182 + +0.7
910,182 + +1.5
910,183 - -2.4
910,183 - +0.7
910,276 - Pf6N2E2_789 0.11 -1.6
910,276 - Pf6N2E2_789 0.11 -0.1
910,383 + Pf6N2E2_789 0.17 -0.2
910,383 + Pf6N2E2_789 0.17 -1.5
910,383 + Pf6N2E2_789 0.17 +0.9
910,384 - Pf6N2E2_789 0.17 -0.8
910,384 - Pf6N2E2_789 0.17 +0.5
910,444 - Pf6N2E2_789 0.20 -1.0
910,464 - Pf6N2E2_789 0.21 -1.5
910,589 + Pf6N2E2_789 0.28 -0.0
910,589 + Pf6N2E2_789 0.28 +0.5
910,589 + Pf6N2E2_789 0.28 -0.2
910,589 + Pf6N2E2_789 0.28 -0.9
910,589 + Pf6N2E2_789 0.28 -1.0
910,589 + Pf6N2E2_789 0.28 -0.6
910,589 + Pf6N2E2_789 0.28 -0.5
910,589 + Pf6N2E2_789 0.28 +0.6
910,589 + Pf6N2E2_789 0.28 -1.3
910,589 + Pf6N2E2_789 0.28 -2.3
910,589 + Pf6N2E2_789 0.28 -1.1
910,590 - Pf6N2E2_789 0.28 -1.6
910,590 - Pf6N2E2_789 0.28 -0.2
910,590 - Pf6N2E2_789 0.28 +1.0
910,590 - Pf6N2E2_789 0.28 +0.4
910,590 - Pf6N2E2_789 0.28 +1.1
910,590 - Pf6N2E2_789 0.28 +1.5
910,640 + Pf6N2E2_789 0.31 -2.2
910,676 + Pf6N2E2_789 0.33 -2.2
910,743 - Pf6N2E2_789 0.36 +0.0
910,743 - Pf6N2E2_789 0.36 -2.2
910,761 + Pf6N2E2_789 0.37 +0.6
910,761 + Pf6N2E2_789 0.37 -0.0
910,818 - Pf6N2E2_789 0.41 -1.3
910,932 + Pf6N2E2_789 0.47 -2.7
910,932 + Pf6N2E2_789 0.47 -0.7
910,933 - Pf6N2E2_789 0.47 +0.3
910,933 - Pf6N2E2_789 0.47 +0.7
910,966 + Pf6N2E2_789 0.49 +0.2
910,966 + Pf6N2E2_789 0.49 +0.1
910,967 - Pf6N2E2_789 0.49 +0.6
910,967 - Pf6N2E2_789 0.49 -0.2
910,967 - Pf6N2E2_789 0.49 +0.7
910,967 - Pf6N2E2_789 0.49 +1.1
910,968 + Pf6N2E2_789 0.49 -0.0
910,968 + Pf6N2E2_789 0.49 -0.7
910,968 + Pf6N2E2_789 0.49 -0.5
910,968 + Pf6N2E2_789 0.49 -0.2
910,968 + Pf6N2E2_789 0.49 +1.5
910,969 - Pf6N2E2_789 0.49 +0.6
910,969 - Pf6N2E2_789 0.49 +0.5
910,969 - Pf6N2E2_789 0.49 -0.9
910,969 - Pf6N2E2_789 0.49 +0.5
910,969 - Pf6N2E2_789 0.49 +0.8
911,100 + Pf6N2E2_789 0.56 +0.2
911,101 - Pf6N2E2_789 0.56 -0.3
911,101 - Pf6N2E2_789 0.56 -0.4
911,107 - Pf6N2E2_789 0.57 -0.0
911,175 + Pf6N2E2_789 0.60 +0.3
911,205 + Pf6N2E2_789 0.62 -1.6
911,570 + Pf6N2E2_789 0.82 +0.1
911,692 + Pf6N2E2_789 0.89 -0.6
911,702 + Pf6N2E2_789 0.89 -1.3
911,742 + +0.5
911,746 - +0.0
911,754 + -0.6
911,757 - +0.7
911,816 + +0.4
912,204 + +0.8
912,215 - +1.4
912,223 + -0.3
912,223 + +0.5
912,223 + +1.5
912,663 + Pf6N2E2_790 0.22 -0.9

Or see this region's nucleotide sequence