Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1240

Experiment: dimethyl sulfone 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1239 and Pf6N2E2_6105 are separated by 124 nucleotidesPf6N2E2_6105 and Pf6N2E2_1240 are separated by 127 nucleotidesPf6N2E2_1240 and Pf6N2E2_1241 are separated by 265 nucleotides Pf6N2E2_1239 - Putative TEGT family carrier/transport protein, at 1,452,240 to 1,452,911 _1239 Pf6N2E2_6105 - tRNA-Ser-TGA, at 1,453,036 to 1,453,120 _6105 Pf6N2E2_1240 - Membrane protease family protein y2843, at 1,453,248 to 1,454,102 _1240 Pf6N2E2_1241 - sensor histidine kinase, at 1,454,368 to 1,456,164 _1241 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1452.296 kb on - strandat 1452.296 kb on - strandat 1452.303 kb on + strandat 1452.303 kb on + strandat 1452.304 kb on - strandat 1452.304 kb on - strandat 1452.307 kb on + strandat 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.308 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.332 kb on - strand, within Pf6N2E2_1239at 1452.335 kb on + strand, within Pf6N2E2_1239at 1452.556 kb on - strand, within Pf6N2E2_1239at 1452.556 kb on - strand, within Pf6N2E2_1239at 1452.556 kb on - strand, within Pf6N2E2_1239at 1452.617 kb on - strand, within Pf6N2E2_1239at 1452.787 kb on + strand, within Pf6N2E2_1239at 1452.832 kb on + strand, within Pf6N2E2_1239at 1452.832 kb on + strand, within Pf6N2E2_1239at 1452.833 kb on - strand, within Pf6N2E2_1239at 1452.955 kb on + strandat 1452.955 kb on + strandat 1452.955 kb on + strandat 1452.956 kb on - strandat 1452.956 kb on - strandat 1452.969 kb on + strandat 1452.977 kb on + strandat 1452.977 kb on + strandat 1452.977 kb on + strandat 1452.977 kb on + strandat 1452.978 kb on - strandat 1452.982 kb on - strandat 1452.982 kb on - strandat 1453.212 kb on - strandat 1453.256 kb on + strandat 1453.257 kb on - strandat 1453.326 kb on + strandat 1453.355 kb on - strand, within Pf6N2E2_1240at 1453.419 kb on - strand, within Pf6N2E2_1240at 1453.464 kb on + strand, within Pf6N2E2_1240at 1453.465 kb on - strand, within Pf6N2E2_1240at 1453.465 kb on - strand, within Pf6N2E2_1240at 1453.482 kb on + strand, within Pf6N2E2_1240at 1453.560 kb on + strandat 1453.560 kb on + strand, within Pf6N2E2_1240at 1453.560 kb on + strand, within Pf6N2E2_1240at 1453.561 kb on - strand, within Pf6N2E2_1240at 1453.561 kb on - strand, within Pf6N2E2_1240at 1453.563 kb on - strand, within Pf6N2E2_1240at 1453.563 kb on - strand, within Pf6N2E2_1240at 1453.636 kb on + strand, within Pf6N2E2_1240at 1453.637 kb on - strand, within Pf6N2E2_1240at 1453.637 kb on - strand, within Pf6N2E2_1240at 1453.694 kb on + strand, within Pf6N2E2_1240at 1453.694 kb on + strand, within Pf6N2E2_1240at 1453.695 kb on - strand, within Pf6N2E2_1240at 1454.100 kb on + strandat 1454.100 kb on + strandat 1454.100 kb on + strandat 1454.101 kb on - strandat 1454.101 kb on - strandat 1454.101 kb on - strandat 1454.232 kb on + strandat 1454.277 kb on - strandat 1454.277 kb on - strandat 1454.365 kb on - strandat 1454.376 kb on + strandat 1454.376 kb on + strandat 1454.377 kb on - strandat 1454.390 kb on - strandat 1454.406 kb on - strandat 1454.442 kb on - strandat 1454.461 kb on + strandat 1454.461 kb on + strandat 1454.462 kb on - strandat 1454.462 kb on - strandat 1454.462 kb on - strandat 1454.462 kb on - strandat 1454.467 kb on + strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.468 kb on - strandat 1454.483 kb on - strandat 1454.483 kb on - strandat 1454.747 kb on + strand, within Pf6N2E2_1241at 1454.747 kb on + strand, within Pf6N2E2_1241at 1454.747 kb on + strand, within Pf6N2E2_1241at 1454.788 kb on - strand, within Pf6N2E2_1241at 1454.788 kb on - strand, within Pf6N2E2_1241at 1454.788 kb on - strand, within Pf6N2E2_1241at 1454.894 kb on - strand, within Pf6N2E2_1241at 1454.894 kb on - strand, within Pf6N2E2_1241at 1454.894 kb on - strand, within Pf6N2E2_1241at 1454.894 kb on - strand, within Pf6N2E2_1241

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Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
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1,452,296 - +1.0
1,452,296 - +2.9
1,452,303 + +0.8
1,452,303 + -1.9
1,452,304 - +1.2
1,452,304 - +0.2
1,452,307 + +1.9
1,452,308 - Pf6N2E2_1239 0.10 -0.3
1,452,308 - Pf6N2E2_1239 0.10 +1.2
1,452,308 - Pf6N2E2_1239 0.10 +1.0
1,452,308 - Pf6N2E2_1239 0.10 -0.7
1,452,308 - Pf6N2E2_1239 0.10 +0.9
1,452,308 - Pf6N2E2_1239 0.10 +0.2
1,452,308 - Pf6N2E2_1239 0.10 -0.9
1,452,308 - Pf6N2E2_1239 0.10 +0.4
1,452,308 - Pf6N2E2_1239 0.10 +1.7
1,452,332 - Pf6N2E2_1239 0.14 +0.3
1,452,332 - Pf6N2E2_1239 0.14 -0.4
1,452,332 - Pf6N2E2_1239 0.14 +0.0
1,452,332 - Pf6N2E2_1239 0.14 +1.3
1,452,332 - Pf6N2E2_1239 0.14 +0.3
1,452,332 - Pf6N2E2_1239 0.14 +1.2
1,452,332 - Pf6N2E2_1239 0.14 +0.9
1,452,332 - Pf6N2E2_1239 0.14 +0.4
1,452,335 + Pf6N2E2_1239 0.14 +2.1
1,452,556 - Pf6N2E2_1239 0.47 +0.1
1,452,556 - Pf6N2E2_1239 0.47 +0.3
1,452,556 - Pf6N2E2_1239 0.47 +0.7
1,452,617 - Pf6N2E2_1239 0.56 +0.8
1,452,787 + Pf6N2E2_1239 0.81 +1.3
1,452,832 + Pf6N2E2_1239 0.88 +0.7
1,452,832 + Pf6N2E2_1239 0.88 -0.7
1,452,833 - Pf6N2E2_1239 0.88 +0.7
1,452,955 + +1.6
1,452,955 + -0.1
1,452,955 + -0.7
1,452,956 - -1.5
1,452,956 - -2.1
1,452,969 + +0.0
1,452,977 + -1.5
1,452,977 + +0.8
1,452,977 + -0.5
1,452,977 + +1.3
1,452,978 - -0.8
1,452,982 - -0.3
1,452,982 - -1.7
1,453,212 - -1.3
1,453,256 + +0.0
1,453,257 - +1.0
1,453,326 + -1.3
1,453,355 - Pf6N2E2_1240 0.13 -0.4
1,453,419 - Pf6N2E2_1240 0.20 -2.0
1,453,464 + Pf6N2E2_1240 0.25 -0.6
1,453,465 - Pf6N2E2_1240 0.25 +0.0
1,453,465 - Pf6N2E2_1240 0.25 +1.3
1,453,482 + Pf6N2E2_1240 0.27 -2.0
1,453,560 + -2.3
1,453,560 + Pf6N2E2_1240 0.36 +0.9
1,453,560 + Pf6N2E2_1240 0.36 +0.6
1,453,561 - Pf6N2E2_1240 0.37 +0.6
1,453,561 - Pf6N2E2_1240 0.37 +0.6
1,453,563 - Pf6N2E2_1240 0.37 +0.2
1,453,563 - Pf6N2E2_1240 0.37 +0.2
1,453,636 + Pf6N2E2_1240 0.45 -1.5
1,453,637 - Pf6N2E2_1240 0.45 -1.3
1,453,637 - Pf6N2E2_1240 0.45 -0.0
1,453,694 + Pf6N2E2_1240 0.52 -2.0
1,453,694 + Pf6N2E2_1240 0.52 -1.2
1,453,695 - Pf6N2E2_1240 0.52 +0.9
1,454,100 + -0.4
1,454,100 + -0.9
1,454,100 + +0.7
1,454,101 - +0.2
1,454,101 - -0.4
1,454,101 - -1.1
1,454,232 + +0.2
1,454,277 - +0.6
1,454,277 - -0.3
1,454,365 - +0.2
1,454,376 + +1.3
1,454,376 + +0.7
1,454,377 - +0.8
1,454,390 - -1.0
1,454,406 - -2.0
1,454,442 - -2.1
1,454,461 + -1.4
1,454,461 + -0.1
1,454,462 - +0.5
1,454,462 - +0.3
1,454,462 - +0.9
1,454,462 - -1.8
1,454,467 + +0.3
1,454,468 - -0.4
1,454,468 - -1.8
1,454,468 - -0.1
1,454,468 - -1.6
1,454,468 - +0.3
1,454,468 - +0.0
1,454,468 - -0.5
1,454,483 - +0.9
1,454,483 - +0.2
1,454,747 + Pf6N2E2_1241 0.21 +0.9
1,454,747 + Pf6N2E2_1241 0.21 +0.2
1,454,747 + Pf6N2E2_1241 0.21 +1.1
1,454,788 - Pf6N2E2_1241 0.23 +0.6
1,454,788 - Pf6N2E2_1241 0.23 +1.9
1,454,788 - Pf6N2E2_1241 0.23 -0.2
1,454,894 - Pf6N2E2_1241 0.29 -1.0
1,454,894 - Pf6N2E2_1241 0.29 +0.3
1,454,894 - Pf6N2E2_1241 0.29 -0.8
1,454,894 - Pf6N2E2_1241 0.29 +0.7

Or see this region's nucleotide sequence