Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21625 and IAI47_21630 are separated by 687 nucleotides IAI47_21630 and IAI47_21635 are separated by 35 nucleotides IAI47_21635 and IAI47_21640 overlap by 4 nucleotides
IAI47_21625: IAI47_21625 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 69,449 to 70,585
_21625
IAI47_21630: IAI47_21630 - YceI family protein, at 71,273 to 71,842
_21630
IAI47_21635: IAI47_21635 - hypothetical protein, at 71,878 to 72,657
_21635
IAI47_21640: IAI47_21640 - sigma-70 family RNA polymerase sigma factor, at 72,654 to 73,154
_21640
Position (kb) 71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 70.357 kb on + strand, within IAI47_21625 at 70.357 kb on + strand, within IAI47_21625 at 70.357 kb on + strand, within IAI47_21625 at 70.357 kb on + strand, within IAI47_21625 at 70.358 kb on - strand, within IAI47_21625 at 70.400 kb on + strand, within IAI47_21625 at 70.400 kb on + strand, within IAI47_21625 at 70.400 kb on + strand, within IAI47_21625 at 70.400 kb on + strand, within IAI47_21625 at 70.400 kb on + strand, within IAI47_21625 at 70.401 kb on - strand, within IAI47_21625 at 70.401 kb on - strand, within IAI47_21625 at 70.401 kb on - strand, within IAI47_21625 at 70.460 kb on + strand, within IAI47_21625 at 70.460 kb on + strand, within IAI47_21625 at 70.460 kb on + strand, within IAI47_21625 at 70.461 kb on - strand, within IAI47_21625 at 70.489 kb on + strand at 70.490 kb on - strand at 70.490 kb on - strand at 70.503 kb on - strand at 70.520 kb on + strand at 70.520 kb on + strand at 70.521 kb on - strand at 70.529 kb on - strand at 70.588 kb on + strand at 70.588 kb on + strand at 70.589 kb on - strand at 70.589 kb on - strand at 70.589 kb on - strand at 70.589 kb on - strand at 70.630 kb on + strand at 70.672 kb on - strand at 70.672 kb on - strand at 70.705 kb on - strand at 70.705 kb on - strand at 70.705 kb on - strand at 70.705 kb on - strand at 70.743 kb on + strand at 70.750 kb on + strand at 70.750 kb on + strand at 70.751 kb on - strand at 70.751 kb on - strand at 70.755 kb on + strand at 70.756 kb on - strand at 70.756 kb on - strand at 70.776 kb on - strand at 70.783 kb on + strand at 70.783 kb on + strand at 70.784 kb on - strand at 70.784 kb on - strand at 70.799 kb on - strand at 70.846 kb on - strand at 70.884 kb on - strand at 70.928 kb on + strand at 70.928 kb on + strand at 70.929 kb on - strand at 70.929 kb on - strand at 70.969 kb on - strand at 71.039 kb on + strand at 71.040 kb on - strand at 71.080 kb on + strand at 71.080 kb on + strand at 71.081 kb on - strand at 71.086 kb on + strand at 71.087 kb on - strand at 71.087 kb on - strand at 71.089 kb on + strand at 71.090 kb on - strand at 71.094 kb on + strand at 71.095 kb on - strand at 71.102 kb on + strand at 71.115 kb on + strand at 71.122 kb on - strand at 71.126 kb on - strand at 71.126 kb on - strand at 71.126 kb on - strand at 71.129 kb on - strand at 71.144 kb on + strand at 71.144 kb on + strand at 71.145 kb on - strand at 71.161 kb on - strand at 71.164 kb on - strand at 71.175 kb on + strand at 71.175 kb on + strand at 71.176 kb on - strand at 71.218 kb on - strand at 71.292 kb on + strand at 71.292 kb on + strand at 71.293 kb on - strand at 71.327 kb on + strand at 71.327 kb on + strand at 71.328 kb on - strand at 71.328 kb on - strand at 71.340 kb on + strand, within IAI47_21630 at 71.340 kb on + strand, within IAI47_21630 at 71.340 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.345 kb on + strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.346 kb on - strand, within IAI47_21630 at 71.347 kb on + strand, within IAI47_21630 at 71.347 kb on + strand, within IAI47_21630 at 71.347 kb on + strand, within IAI47_21630 at 71.347 kb on + strand, within IAI47_21630 at 71.348 kb on - strand, within IAI47_21630 at 71.348 kb on - strand, within IAI47_21630 at 71.352 kb on + strand, within IAI47_21630 at 71.352 kb on + strand, within IAI47_21630 at 71.352 kb on + strand, within IAI47_21630 at 71.353 kb on - strand, within IAI47_21630 at 71.353 kb on - strand, within IAI47_21630 at 71.353 kb on - strand, within IAI47_21630 at 71.353 kb on - strand, within IAI47_21630 at 71.362 kb on + strand, within IAI47_21630 at 71.362 kb on + strand, within IAI47_21630 at 71.362 kb on + strand, within IAI47_21630 at 71.363 kb on - strand, within IAI47_21630 at 71.421 kb on + strand, within IAI47_21630 at 71.422 kb on - strand, within IAI47_21630 at 71.449 kb on + strand, within IAI47_21630 at 71.449 kb on + strand, within IAI47_21630 at 71.449 kb on + strand, within IAI47_21630 at 71.449 kb on + strand, within IAI47_21630 at 71.449 kb on + strand, within IAI47_21630 at 71.450 kb on - strand, within IAI47_21630 at 71.450 kb on - strand, within IAI47_21630 at 71.450 kb on - strand, within IAI47_21630 at 71.476 kb on + strand, within IAI47_21630 at 71.489 kb on - strand, within IAI47_21630 at 71.610 kb on + strand, within IAI47_21630 at 71.610 kb on + strand, within IAI47_21630 at 71.610 kb on + strand, within IAI47_21630 at 71.610 kb on + strand, within IAI47_21630 at 71.611 kb on - strand, within IAI47_21630 at 71.611 kb on - strand, within IAI47_21630 at 71.611 kb on - strand, within IAI47_21630 at 71.611 kb on - strand, within IAI47_21630 at 71.611 kb on - strand, within IAI47_21630 at 71.620 kb on + strand, within IAI47_21630 at 71.620 kb on + strand, within IAI47_21630 at 71.620 kb on + strand, within IAI47_21630 at 71.620 kb on + strand, within IAI47_21630 at 71.620 kb on + strand, within IAI47_21630 at 71.621 kb on - strand, within IAI47_21630 at 71.621 kb on - strand, within IAI47_21630 at 71.621 kb on - strand, within IAI47_21630 at 71.621 kb on - strand, within IAI47_21630 at 71.624 kb on + strand, within IAI47_21630 at 71.624 kb on + strand, within IAI47_21630 at 71.625 kb on - strand, within IAI47_21630 at 71.625 kb on - strand, within IAI47_21630 at 71.625 kb on - strand, within IAI47_21630 at 71.629 kb on + strand, within IAI47_21630 at 71.629 kb on + strand, within IAI47_21630 at 71.698 kb on + strand, within IAI47_21630 at 71.698 kb on + strand, within IAI47_21630 at 71.698 kb on + strand, within IAI47_21630 at 71.698 kb on + strand, within IAI47_21630 at 71.698 kb on + strand, within IAI47_21630 at 71.699 kb on - strand, within IAI47_21630 at 71.699 kb on - strand, within IAI47_21630 at 71.699 kb on - strand, within IAI47_21630 at 71.821 kb on + strand at 71.821 kb on + strand at 71.840 kb on + strand at 71.841 kb on - strand at 71.934 kb on + strand at 71.941 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.951 kb on + strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.952 kb on - strand at 71.958 kb on - strand, within IAI47_21635 at 72.010 kb on - strand, within IAI47_21635 at 72.042 kb on + strand, within IAI47_21635 at 72.043 kb on - strand, within IAI47_21635 at 72.043 kb on - strand, within IAI47_21635 at 72.043 kb on - strand, within IAI47_21635 at 72.043 kb on - strand, within IAI47_21635 at 72.043 kb on - strand, within IAI47_21635 at 72.062 kb on + strand, within IAI47_21635 at 72.062 kb on + strand, within IAI47_21635 at 72.063 kb on - strand, within IAI47_21635 at 72.178 kb on + strand, within IAI47_21635 at 72.192 kb on + strand, within IAI47_21635 at 72.258 kb on - strand, within IAI47_21635 at 72.267 kb on + strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.268 kb on - strand, within IAI47_21635 at 72.269 kb on + strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.270 kb on - strand, within IAI47_21635 at 72.359 kb on - strand, within IAI47_21635 at 72.381 kb on + strand, within IAI47_21635 at 72.382 kb on - strand, within IAI47_21635 at 72.382 kb on - strand, within IAI47_21635 at 72.397 kb on - strand, within IAI47_21635 at 72.397 kb on - strand, within IAI47_21635 at 72.397 kb on - strand, within IAI47_21635 at 72.397 kb on - strand, within IAI47_21635 at 72.398 kb on + strand, within IAI47_21635 at 72.399 kb on - strand, within IAI47_21635 at 72.473 kb on - strand, within IAI47_21635 at 72.702 kb on + strand at 72.734 kb on + strand, within IAI47_21640 at 72.734 kb on + strand, within IAI47_21640 at 72.734 kb on + strand, within IAI47_21640 at 72.734 kb on + strand, within IAI47_21640 at 72.734 kb on + strand, within IAI47_21640 at 72.734 kb on + strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.735 kb on - strand, within IAI47_21640 at 72.778 kb on + strand, within IAI47_21640 at 72.779 kb on - strand, within IAI47_21640
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 70,357 + IAI47_21625 0.80 +0.2 70,357 + IAI47_21625 0.80 +2.3 70,357 + IAI47_21625 0.80 +1.2 70,357 + IAI47_21625 0.80 +1.6 70,358 - IAI47_21625 0.80 -3.0 70,400 + IAI47_21625 0.84 +2.2 70,400 + IAI47_21625 0.84 +1.1 70,400 + IAI47_21625 0.84 +1.1 70,400 + IAI47_21625 0.84 -2.2 70,400 + IAI47_21625 0.84 -1.9 70,401 - IAI47_21625 0.84 +0.6 70,401 - IAI47_21625 0.84 +2.3 70,401 - IAI47_21625 0.84 +2.5 70,460 + IAI47_21625 0.89 +2.1 70,460 + IAI47_21625 0.89 -1.5 70,460 + IAI47_21625 0.89 -2.1 70,461 - IAI47_21625 0.89 +3.4 70,489 + -1.7 70,490 - +1.8 70,490 - +2.6 70,503 - +0.4 70,520 + -0.9 70,520 + +0.2 70,521 - +0.4 70,529 - +4.0 70,588 + +0.8 70,588 + +2.4 70,589 - +2.4 70,589 - -2.1 70,589 - -2.3 70,589 - -0.5 70,630 + +0.9 70,672 - +1.1 70,672 - +2.1 70,705 - +3.3 70,705 - -0.5 70,705 - +2.7 70,705 - -1.1 70,743 + -1.2 70,750 + +2.1 70,750 + +2.5 70,751 - -2.0 70,751 - -0.2 70,755 + -1.4 70,756 - +3.3 70,756 - +1.8 70,776 - -1.8 70,783 + +2.7 70,783 + +0.7 70,784 - +0.1 70,784 - +3.3 70,799 - +2.8 70,846 - +1.8 70,884 - +3.0 70,928 + +1.5 70,928 + -0.2 70,929 - +2.8 70,929 - -1.4 70,969 - +0.7 71,039 + +0.6 71,040 - +0.1 71,080 + -0.5 71,080 + -1.5 71,081 - +2.6 71,086 + +2.1 71,087 - -0.9 71,087 - -0.1 71,089 + -0.5 71,090 - -1.7 71,094 + +2.7 71,095 - +1.4 71,102 + -2.0 71,115 + -0.7 71,122 - +2.6 71,126 - -0.5 71,126 - +0.7 71,126 - +2.6 71,129 - +1.3 71,144 + -1.1 71,144 + +0.1 71,145 - -0.7 71,161 - +1.0 71,164 - -0.7 71,175 + +1.3 71,175 + -0.5 71,176 - +0.4 71,218 - +0.1 71,292 + +1.7 71,292 + +1.6 71,293 - -0.5 71,327 + -0.9 71,327 + +2.5 71,328 - -0.6 71,328 - +2.0 71,340 + IAI47_21630 0.12 +5.3 71,340 + IAI47_21630 0.12 +1.5 71,340 + IAI47_21630 0.12 -2.7 71,345 + IAI47_21630 0.13 +2.3 71,345 + IAI47_21630 0.13 +0.4 71,345 + IAI47_21630 0.13 -2.9 71,345 + IAI47_21630 0.13 -0.5 71,345 + IAI47_21630 0.13 -0.7 71,345 + IAI47_21630 0.13 -2.2 71,345 + IAI47_21630 0.13 +3.5 71,345 + IAI47_21630 0.13 +2.1 71,345 + IAI47_21630 0.13 +3.1 71,346 - IAI47_21630 0.13 +1.7 71,346 - IAI47_21630 0.13 +3.9 71,346 - IAI47_21630 0.13 +1.2 71,346 - IAI47_21630 0.13 -0.2 71,346 - IAI47_21630 0.13 +2.7 71,346 - IAI47_21630 0.13 -1.1 71,346 - IAI47_21630 0.13 -0.9 71,346 - IAI47_21630 0.13 +3.5 71,346 - IAI47_21630 0.13 +0.5 71,346 - IAI47_21630 0.13 -1.4 71,346 - IAI47_21630 0.13 +2.1 71,346 - IAI47_21630 0.13 -0.7 71,347 + IAI47_21630 0.13 +1.0 71,347 + IAI47_21630 0.13 +1.1 71,347 + IAI47_21630 0.13 -0.2 71,347 + IAI47_21630 0.13 +2.1 71,348 - IAI47_21630 0.13 -0.7 71,348 - IAI47_21630 0.13 -1.2 71,352 + IAI47_21630 0.14 -1.5 71,352 + IAI47_21630 0.14 +2.1 71,352 + IAI47_21630 0.14 +1.1 71,353 - IAI47_21630 0.14 +0.7 71,353 - IAI47_21630 0.14 +2.1 71,353 - IAI47_21630 0.14 -0.9 71,353 - IAI47_21630 0.14 +0.2 71,362 + IAI47_21630 0.16 -1.1 71,362 + IAI47_21630 0.16 +0.0 71,362 + IAI47_21630 0.16 -1.1 71,363 - IAI47_21630 0.16 +0.5 71,421 + IAI47_21630 0.26 +2.2 71,422 - IAI47_21630 0.26 -0.9 71,449 + IAI47_21630 0.31 -0.9 71,449 + IAI47_21630 0.31 +2.4 71,449 + IAI47_21630 0.31 -0.9 71,449 + IAI47_21630 0.31 +3.4 71,449 + IAI47_21630 0.31 -0.7 71,450 - IAI47_21630 0.31 +0.4 71,450 - IAI47_21630 0.31 -1.4 71,450 - IAI47_21630 0.31 +1.6 71,476 + IAI47_21630 0.36 -1.6 71,489 - IAI47_21630 0.38 +0.6 71,610 + IAI47_21630 0.59 -1.2 71,610 + IAI47_21630 0.59 -1.7 71,610 + IAI47_21630 0.59 +2.1 71,610 + IAI47_21630 0.59 -1.5 71,611 - IAI47_21630 0.59 +0.7 71,611 - IAI47_21630 0.59 +0.5 71,611 - IAI47_21630 0.59 -0.7 71,611 - IAI47_21630 0.59 +0.5 71,611 - IAI47_21630 0.59 +2.3 71,620 + IAI47_21630 0.61 +1.3 71,620 + IAI47_21630 0.61 -1.2 71,620 + IAI47_21630 0.61 -0.9 71,620 + IAI47_21630 0.61 +2.6 71,620 + IAI47_21630 0.61 -0.1 71,621 - IAI47_21630 0.61 +1.8 71,621 - IAI47_21630 0.61 +3.9 71,621 - IAI47_21630 0.61 +2.6 71,621 - IAI47_21630 0.61 -2.2 71,624 + IAI47_21630 0.62 +1.4 71,624 + IAI47_21630 0.62 +1.9 71,625 - IAI47_21630 0.62 +1.1 71,625 - IAI47_21630 0.62 +0.1 71,625 - IAI47_21630 0.62 -1.1 71,629 + IAI47_21630 0.62 -1.4 71,629 + IAI47_21630 0.62 -1.5 71,698 + IAI47_21630 0.75 +0.4 71,698 + IAI47_21630 0.75 +2.8 71,698 + IAI47_21630 0.75 +2.0 71,698 + IAI47_21630 0.75 +1.2 71,698 + IAI47_21630 0.75 -1.7 71,699 - IAI47_21630 0.75 -1.6 71,699 - IAI47_21630 0.75 -0.9 71,699 - IAI47_21630 0.75 -2.4 71,821 + +0.6 71,821 + -0.2 71,840 + -0.1 71,841 - -2.8 71,934 + -1.1 71,941 + -1.8 71,951 + +0.5 71,951 + -0.2 71,951 + +5.0 71,951 + +0.9 71,951 + +2.9 71,951 + -2.2 71,951 + -0.5 71,951 + -1.8 71,952 - +0.7 71,952 - +2.1 71,952 - -0.9 71,952 - +1.1 71,952 - -2.3 71,952 - -2.1 71,952 - -1.6 71,952 - -1.9 71,952 - +1.1 71,952 - -0.2 71,952 - -1.0 71,952 - +0.6 71,952 - -2.2 71,958 - IAI47_21635 0.10 -0.2 72,010 - IAI47_21635 0.17 -2.5 72,042 + IAI47_21635 0.21 -1.7 72,043 - IAI47_21635 0.21 -0.9 72,043 - IAI47_21635 0.21 -1.2 72,043 - IAI47_21635 0.21 +3.9 72,043 - IAI47_21635 0.21 +4.9 72,043 - IAI47_21635 0.21 -1.4 72,062 + IAI47_21635 0.24 -0.2 72,062 + IAI47_21635 0.24 +2.1 72,063 - IAI47_21635 0.24 +4.6 72,178 + IAI47_21635 0.38 -2.1 72,192 + IAI47_21635 0.40 +1.6 72,258 - IAI47_21635 0.49 -1.5 72,267 + IAI47_21635 0.50 -0.4 72,268 - IAI47_21635 0.50 -0.9 72,268 - IAI47_21635 0.50 -0.6 72,268 - IAI47_21635 0.50 +1.3 72,268 - IAI47_21635 0.50 +3.4 72,268 - IAI47_21635 0.50 -1.6 72,268 - IAI47_21635 0.50 +2.5 72,268 - IAI47_21635 0.50 -1.1 72,268 - IAI47_21635 0.50 -0.2 72,269 + IAI47_21635 0.50 -1.4 72,270 - IAI47_21635 0.50 +0.3 72,270 - IAI47_21635 0.50 +1.3 72,270 - IAI47_21635 0.50 +0.5 72,270 - IAI47_21635 0.50 +1.1 72,270 - IAI47_21635 0.50 +2.7 72,270 - IAI47_21635 0.50 -1.4 72,270 - IAI47_21635 0.50 +1.6 72,270 - IAI47_21635 0.50 -0.1 72,359 - IAI47_21635 0.62 +1.9 72,381 + IAI47_21635 0.64 -0.5 72,382 - IAI47_21635 0.65 +1.0 72,382 - IAI47_21635 0.65 +3.1 72,397 - IAI47_21635 0.67 +0.7 72,397 - IAI47_21635 0.67 +0.9 72,397 - IAI47_21635 0.67 -0.7 72,397 - IAI47_21635 0.67 -0.1 72,398 + IAI47_21635 0.67 -1.4 72,399 - IAI47_21635 0.67 +0.6 72,473 - IAI47_21635 0.76 -0.5 72,702 + -0.6 72,734 + IAI47_21640 0.16 +1.3 72,734 + IAI47_21640 0.16 -3.7 72,734 + IAI47_21640 0.16 -1.3 72,734 + IAI47_21640 0.16 +2.8 72,734 + IAI47_21640 0.16 -0.2 72,734 + IAI47_21640 0.16 +1.0 72,735 - IAI47_21640 0.16 +3.5 72,735 - IAI47_21640 0.16 +0.1 72,735 - IAI47_21640 0.16 -1.7 72,735 - IAI47_21640 0.16 +3.4 72,735 - IAI47_21640 0.16 -0.7 72,735 - IAI47_21640 0.16 +3.1 72,778 + IAI47_21640 0.25 +1.9 72,779 - IAI47_21640 0.25 -0.5
Or see this region's nucleotide sequence