Strain Fitness in Pantoea sp. MT58 around IAI47_21375

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
8,094	+				+2.2
8,094	+				+2.1
8,094	+				-0.2
8,142	+				-1.4
8,142	+				+1.8
8,143	-				+4.4
8,143	-				+0.8
8,143	-				-0.2
8,143	-				-0.7
8,148	+				-0.7
8,148	+				-0.7
8,149	-				-2.1
8,149	-				+0.1
8,149	-				+3.1
8,149	-				-0.7
8,172	+				-1.7
8,217	+		IAI47_21370	0.12	+2.9
8,218	-		IAI47_21370	0.12	-2.0
8,218	-		IAI47_21370	0.12	-0.5
8,218	-		IAI47_21370	0.12	+1.7
8,218	-		IAI47_21370	0.12	+2.6
8,241	+		IAI47_21370	0.15	+0.0
8,242	-		IAI47_21370	0.15	-0.5
8,242	-		IAI47_21370	0.15	+0.5
8,346	+		IAI47_21370	0.29	+1.1
8,347	-		IAI47_21370	0.29	+2.1
8,347	-		IAI47_21370	0.29	-1.1
8,386	-		IAI47_21370	0.34	-1.2
8,546	+		IAI47_21370	0.55	-2.6
8,547	-		IAI47_21370	0.55	-0.2
8,554	-		IAI47_21370	0.56	+2.3
8,554	-		IAI47_21370	0.56	-0.7
8,558	+		IAI47_21370	0.57	+1.9
8,558	+		IAI47_21370	0.57	+0.5
8,559	-		IAI47_21370	0.57	+1.5
8,559	-		IAI47_21370	0.57	-1.2
8,559	-		IAI47_21370	0.57	+1.9
8,559	-		IAI47_21370	0.57	+1.3
8,574	-		IAI47_21370	0.59	-1.5
8,574	-		IAI47_21370	0.59	-3.1
8,608	-		IAI47_21370	0.63	+0.5
8,643	+		IAI47_21370	0.68	-1.5
8,644	-		IAI47_21370	0.68	+1.1
8,644	-		IAI47_21370	0.68	-0.7
8,644	-		IAI47_21370	0.68	+0.6
8,644	-		IAI47_21370	0.68	-0.2
8,694	+		IAI47_21370	0.74	-0.7
8,694	+		IAI47_21370	0.74	+0.8
8,694	+		IAI47_21370	0.74	-0.5
8,694	+		IAI47_21370	0.74	+0.3
8,695	-		IAI47_21370	0.75	+3.0
8,695	-		IAI47_21370	0.75	-1.1
8,695	-		IAI47_21370	0.75	+0.1
8,695	-		IAI47_21370	0.75	+2.6
8,704	-		IAI47_21370	0.76	+1.0
8,721	+		IAI47_21370	0.78	+1.3
8,721	+		IAI47_21370	0.78	-0.7
8,721	+		IAI47_21370	0.78	-3.0
8,721	+		IAI47_21370	0.78	+3.7
8,721	+		IAI47_21370	0.78	-1.6
8,721	+		IAI47_21370	0.78	-1.5
8,721	+		IAI47_21370	0.78	+3.5
8,721	+		IAI47_21370	0.78	-0.6
8,721	+		IAI47_21370	0.78	-0.1
8,721	+		IAI47_21370	0.78	+2.2
8,722	-		IAI47_21370	0.78	-0.5
8,722	-		IAI47_21370	0.78	-3.0
8,722	-		IAI47_21370	0.78	+0.1
8,722	-		IAI47_21370	0.78	-1.6
8,722	-		IAI47_21370	0.78	-0.6
8,722	-		IAI47_21370	0.78	-0.8
8,722	-		IAI47_21370	0.78	-1.1
8,722	-		IAI47_21370	0.78	+4.2
8,752	+		IAI47_21370	0.82	+2.8
8,752	+		IAI47_21370	0.82	-0.5
8,752	+		IAI47_21370	0.82	+2.1
8,752	+		IAI47_21370	0.82	+0.8
8,753	-		IAI47_21370	0.82	-0.9
8,753	-		IAI47_21370	0.82	+2.1
8,753	-		IAI47_21370	0.82	+2.6
8,772	+		IAI47_21370	0.85	+1.5
8,772	+		IAI47_21370	0.85	+2.3
8,772	+		IAI47_21370	0.85	+4.0
8,773	-		IAI47_21370	0.85	-1.2
8,773	-		IAI47_21370	0.85	-1.9
8,773	-		IAI47_21370	0.85	-0.5
8,773	-		IAI47_21370	0.85	+1.9
8,781	-		IAI47_21370	0.86	+1.5
8,807	-		IAI47_21370	0.89	-1.6
8,863	+				+2.1
8,863	+				-1.4
8,863	+				+0.8
8,863	+				-0.1
8,863	+				+1.3
8,863	+				-1.4
8,863	+				-1.1
8,863	+				-1.1
8,863	+				-0.2
8,863	+				-1.1
8,864	-				+1.6
8,864	-				+0.1
8,864	-				-1.4
8,864	-				-1.5
8,864	-				+1.0
8,864	-				+0.1
8,864	-				+2.6
8,864	-				+1.0
8,864	-				-2.4
8,874	+				+0.1
8,875	-				-3.3
8,889	+				+0.1
8,889	+				+0.2
8,889	+				-0.2
8,889	+				-0.5
8,889	+				+0.3
8,889	+				+3.1
8,889	+				+0.1
8,889	+				-0.7
8,889	+				+2.3
8,889	+				-0.6
8,889	+				-1.1
8,889	+				-0.2
8,889	+				+4.3
8,889	+				-1.1
8,889	+				+6.3
8,890	-				-1.8
8,890	-				-0.2
8,890	-				-0.7
8,890	-				-0.5
8,890	-				-1.2
8,890	-				+0.8
8,890	-				-1.5
8,890	-				+1.1
8,890	-				-1.1
8,890	-				+0.0
8,890	-				-2.1
8,893	+				-0.1
8,893	+				+1.3
8,893	+				+0.1
8,893	+				-0.7
8,893	+				+3.2
8,893	+				+1.6
8,893	+				+2.6
8,893	+				+2.0
8,893	+				+0.1
8,893	+				-0.9
8,893	+				-1.6
8,893	+				-1.2
8,893	+				-0.5
8,893	+				+1.4
8,894	-				-2.1
8,894	-				-0.2
8,894	-				+3.5
8,894	-				-0.9
8,894	-				-1.8
8,894	-				-1.0
8,894	-				-1.1
8,894	-				-0.5
8,897	-				+1.1
8,943	-				-1.9
8,943	-				+2.0
8,943	-				-1.5
8,970	-				+1.3
9,014	-				-1.7
9,014	-				-0.1
9,026	+				+1.8
9,026	+				-0.7
9,064	+				-1.2
9,065	-				-2.3
9,098	+				-1.4
9,098	+				-1.8
9,098	+				+1.1
9,098	+				+0.5
9,098	+				+1.1
9,098	+				-2.3
9,099	-				-1.2
9,099	-				+2.1
9,099	-				-1.7
9,099	-				-1.6
9,099	-				-0.5
9,099	-				+0.6
9,099	-				-2.3
9,099	-				-1.9
9,099	-				+0.4
9,102	+				-1.1
9,102	+				+3.3
9,102	+				-1.4
9,103	-				+1.8
9,103	-				+4.3
9,103	-				-1.5
9,152	+		IAI47_21375	0.30	+0.5
9,152	+		IAI47_21375	0.30	+3.7
9,158	+		IAI47_21375	0.33	-1.5
9,158	+		IAI47_21375	0.33	-0.7
9,159	-		IAI47_21375	0.34	+0.2
9,159	-		IAI47_21375	0.34	-2.5
9,174	+		IAI47_21375	0.41	-0.7
9,213	+		IAI47_21375	0.60	-1.7
9,213	+		IAI47_21375	0.60	-0.5
9,213	+		IAI47_21375	0.60	+2.5
9,213	+		IAI47_21375	0.60	+2.8
9,213	+		IAI47_21375	0.60	+0.1
9,214	-		IAI47_21375	0.60	-1.6
9,214	-		IAI47_21375	0.60	+0.1
9,214	-		IAI47_21375	0.60	-0.6
9,214	-		IAI47_21375	0.60	-0.2
9,225	+		IAI47_21375	0.65	+0.4
9,225	+		IAI47_21375	0.65	+2.1
9,225	+		IAI47_21375	0.65	-2.1
9,225	+		IAI47_21375	0.65	+0.3
9,252	+		IAI47_21375	0.78	-1.1
9,252	+		IAI47_21375	0.78	-0.1
9,252	+		IAI47_21375	0.78	+1.4
9,252	+		IAI47_21375	0.78	+0.5
9,252	+		IAI47_21375	0.78	+0.4
9,252	+		IAI47_21375	0.78	-0.5
9,253	-		IAI47_21375	0.79	-0.1
9,253	-		IAI47_21375	0.79	-0.5
9,253	-		IAI47_21375	0.79	+0.1
9,253	-		IAI47_21375	0.79	-1.5
9,253	-		IAI47_21375	0.79	+1.1
9,253	-		IAI47_21375	0.79	-1.2
9,273	+		IAI47_21375	0.88	-1.5
9,322	+				+0.5
9,322	+				-0.3
9,323	-				+1.4
9,341	+				+1.1
9,341	+				-1.1
9,341	+				-2.5
9,341	+				+1.7
9,341	+				+1.5
9,341	+				-0.9
9,342	-				+1.1
9,342	-				+1.8
9,342	-				-2.7
9,342	-				-0.9
9,342	-				-2.0
9,342	-				-0.9
9,342	-				-1.5
9,342	-				+1.8
9,342	-				+1.9
9,342	-				-1.4
9,372	+				+1.3
9,372	+				+0.8
9,373	-				-1.8
9,373	-				-1.0
9,448	+				-1.1
9,448	+				-0.9
9,449	-				-1.9
9,449	-				+2.4
9,469	+				+1.0
9,469	+				-1.2
9,469	+				-1.1
9,499	+				-1.5
9,499	+				-1.9
9,499	+				+0.4
9,499	+				+1.7
9,500	-				+0.0
9,548	+				-0.7
9,548	+				+3.6
9,549	-				+3.1
9,549	-				+1.0
9,549	-				-1.1
9,551	+				-1.4
9,552	-				+2.8
9,598	+		IAI47_21380	0.10	+0.3
9,599	-		IAI47_21380	0.10	-0.7
9,643	-		IAI47_21380	0.14	+1.1
9,643	-		IAI47_21380	0.14	+0.5
9,643	-		IAI47_21380	0.14	+1.9
9,643	-		IAI47_21380	0.14	+3.2
9,643	-		IAI47_21380	0.14	+0.1
9,655	+		IAI47_21380	0.15	+2.4
9,655	+		IAI47_21380	0.15	+1.4
9,655	+		IAI47_21380	0.15	-0.3
9,656	-		IAI47_21380	0.15	+1.7
9,656	-		IAI47_21380	0.15	-2.1
9,656	-		IAI47_21380	0.15	-0.1
9,656	-		IAI47_21380	0.15	+2.9
9,658	+		IAI47_21380	0.15	+0.6
9,659	-		IAI47_21380	0.15	-0.7
9,659	-		IAI47_21380	0.15	-0.5
9,659	-		IAI47_21380	0.15	+3.5
9,715	-		IAI47_21380	0.20	-0.2
9,804	+		IAI47_21380	0.27	-0.7
9,805	-		IAI47_21380	0.27	-1.7
9,814	+		IAI47_21380	0.28	+2.5
9,814	+		IAI47_21380	0.28	-1.2
9,814	+		IAI47_21380	0.28	+1.8
9,915	+		IAI47_21380	0.36	+1.9
9,915	+		IAI47_21380	0.36	+2.3
9,915	+		IAI47_21380	0.36	+1.6
9,915	+		IAI47_21380	0.36	+2.0
9,916	-		IAI47_21380	0.36	+2.5
9,925	+		IAI47_21380	0.37	-0.2
9,926	-		IAI47_21380	0.37	+0.1
9,926	-		IAI47_21380	0.37	-1.4
9,926	-		IAI47_21380	0.37	-2.5
10,019	+		IAI47_21380	0.45	-0.9
10,019	+		IAI47_21380	0.45	-0.9
10,019	+		IAI47_21380	0.45	+0.1
10,019	+		IAI47_21380	0.45	-1.1
10,026	+		IAI47_21380	0.45	+0.1
10,026	+		IAI47_21380	0.45	+3.4
10,027	-		IAI47_21380	0.46	+3.4
10,027	-		IAI47_21380	0.46	-1.9
10,027	-		IAI47_21380	0.46	+0.5
10,076	+		IAI47_21380	0.50	+0.9
10,108	+		IAI47_21380	0.52	-0.3
10,108	+		IAI47_21380	0.52	+2.3
10,108	+		IAI47_21380	0.52	+0.5
10,109	-		IAI47_21380	0.52	+1.1
10,221	+		IAI47_21380	0.61	-1.2
10,222	-		IAI47_21380	0.62	+1.6
10,222	-		IAI47_21380	0.62	+0.9
10,222	-		IAI47_21380	0.62	+1.8
10,228	+		IAI47_21380	0.62	-1.4
10,243	+		IAI47_21380	0.63	+4.5
10,243	+		IAI47_21380	0.63	+1.1
10,243	+		IAI47_21380	0.63	+2.1
10,243	+		IAI47_21380	0.63	+0.3
10,243	+		IAI47_21380	0.63	-0.5
10,243	+		IAI47_21380	0.63	+2.5
10,244	-		IAI47_21380	0.63	-2.4
10,244	-		IAI47_21380	0.63	-1.1
10,244	-		IAI47_21380	0.63	+1.1
10,266	+		IAI47_21380	0.65	+0.9
10,267	-		IAI47_21380	0.65	+0.5
10,267	-		IAI47_21380	0.65	+0.2
10,267	-		IAI47_21380	0.65	+3.8
10,267	-		IAI47_21380	0.65	+1.9
10,278	+		IAI47_21380	0.66	-0.5
10,279	-		IAI47_21380	0.66	-1.9