Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20765 and IAI47_20770 are separated by 173 nucleotides IAI47_20770 and IAI47_20775 overlap by 1 nucleotides IAI47_20775 and IAI47_20780 are separated by 89 nucleotides IAI47_20780 and IAI47_20785 are separated by 60 nucleotides
IAI47_20765: IAI47_20765 - IclR family transcriptional regulator, at 398,613 to 399,323
_20765
IAI47_20770: IAI47_20770 - RraA family protein, at 399,497 to 400,189
_20770
IAI47_20775: IAI47_20775 - hydroxyacid dehydrogenase, at 400,189 to 401,139
_20775
IAI47_20780: IAI47_20780 - cupin domain-containing protein, at 401,229 to 401,576
_20780
IAI47_20785: IAI47_20785 - GNAT family N-acetyltransferase, at 401,637 to 402,125
_20785
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 399.197 kb on - strand, within IAI47_20765 at 399.210 kb on - strand, within IAI47_20765 at 399.214 kb on + strand, within IAI47_20765 at 399.306 kb on + strand at 399.306 kb on + strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.328 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.388 kb on + strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.407 kb on + strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.428 kb on + strand at 399.428 kb on + strand at 399.429 kb on - strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.437 kb on + strand at 399.438 kb on - strand at 399.438 kb on - strand at 399.496 kb on + strand at 399.496 kb on + strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.502 kb on + strand at 399.502 kb on + strand at 399.503 kb on - strand at 399.503 kb on - strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.515 kb on - strand at 399.575 kb on + strand, within IAI47_20770 at 399.576 kb on - strand, within IAI47_20770 at 399.589 kb on - strand, within IAI47_20770 at 399.634 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.677 kb on - strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.842 kb on - strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.929 kb on - strand, within IAI47_20770 at 399.950 kb on - strand, within IAI47_20770 at 400.009 kb on + strand, within IAI47_20770 at 400.010 kb on - strand, within IAI47_20770 at 400.137 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.307 kb on + strand, within IAI47_20775 at 400.307 kb on + strand, within IAI47_20775 at 400.359 kb on + strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.434 kb on + strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.465 kb on - strand, within IAI47_20775 at 400.515 kb on + strand, within IAI47_20775 at 400.516 kb on - strand, within IAI47_20775 at 400.553 kb on + strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.582 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.591 kb on - strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.709 kb on - strand, within IAI47_20775 at 400.855 kb on - strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.049 kb on + strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.056 kb on + strand at 401.056 kb on + strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.086 kb on - strand at 401.086 kb on - strand at 401.115 kb on + strand at 401.116 kb on - strand at 401.137 kb on + strand at 401.138 kb on - strand at 401.157 kb on + strand at 401.158 kb on - strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.181 kb on - strand at 401.181 kb on - strand at 401.203 kb on + strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.213 kb on + strand at 401.214 kb on - strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.286 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.602 kb on + strand at 401.602 kb on + strand at 401.602 kb on + strand at 401.603 kb on - strand at 401.648 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.789 kb on + strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.807 kb on + strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.825 kb on + strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.889 kb on - strand, within IAI47_20785 at 401.890 kb on + strand, within IAI47_20785 at 401.906 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 402.004 kb on + strand, within IAI47_20785 at 402.005 kb on - strand, within IAI47_20785 at 402.029 kb on + strand, within IAI47_20785 at 402.030 kb on - strand, within IAI47_20785 at 402.039 kb on - strand, within IAI47_20785 at 402.043 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.117 kb on + strand at 402.117 kb on + strand at 402.118 kb on - strand at 402.129 kb on + strand at 402.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 399,197 - IAI47_20765 0.82 -0.2 399,210 - IAI47_20765 0.84 +2.6 399,214 + IAI47_20765 0.85 -1.6 399,306 + +0.8 399,306 + -1.9 399,307 - +0.7 399,307 - +0.6 399,307 - -2.0 399,327 + +0.3 399,327 + +0.9 399,327 + -1.2 399,327 + -1.6 399,328 - -1.2 399,385 - -1.5 399,385 - +3.4 399,385 - -2.2 399,385 - +2.1 399,388 + -1.2 399,389 - -0.1 399,389 - +0.1 399,389 - +2.1 399,407 + +0.7 399,408 - +0.7 399,408 - +1.5 399,408 - +1.4 399,428 + -0.6 399,428 + +1.6 399,429 - +1.8 399,433 + -1.2 399,433 + -1.7 399,433 + +2.5 399,433 + +3.7 399,433 + -0.5 399,433 + -1.9 399,433 + +3.4 399,433 + -1.6 399,434 - +2.1 399,434 - +2.5 399,434 - -1.2 399,434 - +2.6 399,434 - +2.6 399,434 - +0.8 399,434 - +0.5 399,434 - -2.0 399,437 + +2.3 399,438 - +0.7 399,438 - +1.0 399,496 + -0.9 399,496 + -0.8 399,497 - +3.0 399,497 - -1.2 399,497 - -0.7 399,497 - +2.1 399,497 - +2.3 399,497 - -2.0 399,502 + -1.6 399,502 + +3.3 399,503 - -3.0 399,503 - -2.2 399,514 + -2.3 399,514 + -2.2 399,514 + +2.6 399,514 + -2.8 399,514 + +0.0 399,515 - -0.3 399,575 + IAI47_20770 0.11 -2.1 399,576 - IAI47_20770 0.11 +2.4 399,589 - IAI47_20770 0.13 +1.8 399,634 + IAI47_20770 0.20 -0.2 399,676 + IAI47_20770 0.26 +1.0 399,676 + IAI47_20770 0.26 -2.7 399,676 + IAI47_20770 0.26 -1.2 399,677 - IAI47_20770 0.26 +1.5 399,786 + IAI47_20770 0.42 +3.7 399,786 + IAI47_20770 0.42 -0.5 399,800 - IAI47_20770 0.44 -2.7 399,800 - IAI47_20770 0.44 -1.8 399,800 - IAI47_20770 0.44 +0.1 399,841 + IAI47_20770 0.50 +0.4 399,841 + IAI47_20770 0.50 +1.5 399,841 + IAI47_20770 0.50 +0.4 399,841 + IAI47_20770 0.50 -2.6 399,842 - IAI47_20770 0.50 +2.1 399,928 + IAI47_20770 0.62 -0.4 399,928 + IAI47_20770 0.62 +1.5 399,928 + IAI47_20770 0.62 +1.2 399,929 - IAI47_20770 0.62 +3.4 399,950 - IAI47_20770 0.65 -1.1 400,009 + IAI47_20770 0.74 +1.3 400,010 - IAI47_20770 0.74 -0.9 400,137 + +0.1 400,276 + -1.4 400,276 + +3.8 400,276 + -2.8 400,276 + -1.5 400,307 + IAI47_20775 0.12 -2.8 400,307 + IAI47_20775 0.12 -1.9 400,359 + IAI47_20775 0.18 -0.7 400,360 - IAI47_20775 0.18 -1.5 400,360 - IAI47_20775 0.18 -0.2 400,434 + IAI47_20775 0.26 +1.1 400,435 - IAI47_20775 0.26 -0.5 400,435 - IAI47_20775 0.26 +2.4 400,435 - IAI47_20775 0.26 -0.7 400,435 - IAI47_20775 0.26 -2.3 400,465 - IAI47_20775 0.29 -0.5 400,515 + IAI47_20775 0.34 -1.5 400,516 - IAI47_20775 0.34 +3.9 400,553 + IAI47_20775 0.38 +3.9 400,554 - IAI47_20775 0.38 +3.2 400,554 - IAI47_20775 0.38 +2.1 400,569 + IAI47_20775 0.40 +3.2 400,569 + IAI47_20775 0.40 +0.1 400,569 + IAI47_20775 0.40 +1.3 400,582 + IAI47_20775 0.41 -1.5 400,590 + IAI47_20775 0.42 -1.6 400,590 + IAI47_20775 0.42 -2.1 400,590 + IAI47_20775 0.42 -1.2 400,591 - IAI47_20775 0.42 +2.5 400,602 + IAI47_20775 0.43 -1.5 400,602 + IAI47_20775 0.43 -1.8 400,603 - IAI47_20775 0.44 -2.1 400,603 - IAI47_20775 0.44 -1.6 400,603 - IAI47_20775 0.44 -1.4 400,708 + IAI47_20775 0.55 +2.0 400,708 + IAI47_20775 0.55 -1.2 400,709 - IAI47_20775 0.55 -2.2 400,855 - IAI47_20775 0.70 +1.8 400,992 + IAI47_20775 0.84 +2.7 400,992 + IAI47_20775 0.84 +2.5 400,992 + IAI47_20775 0.84 +1.3 400,993 - IAI47_20775 0.85 +2.0 400,993 - IAI47_20775 0.85 +3.8 400,993 - IAI47_20775 0.85 -1.5 400,993 - IAI47_20775 0.85 +3.1 400,993 - IAI47_20775 0.85 +0.1 400,993 - IAI47_20775 0.85 +1.6 401,015 + IAI47_20775 0.87 -0.3 401,015 + IAI47_20775 0.87 -0.0 401,015 + IAI47_20775 0.87 -2.3 401,015 + IAI47_20775 0.87 +1.6 401,015 + IAI47_20775 0.87 -1.7 401,016 - IAI47_20775 0.87 -1.2 401,016 - IAI47_20775 0.87 +1.8 401,049 + +0.5 401,050 - -0.5 401,050 - +0.6 401,050 - +0.1 401,056 + -1.4 401,056 + +2.1 401,057 - +1.7 401,057 - -2.8 401,057 - +0.5 401,057 - +0.7 401,085 + +0.1 401,085 + -0.5 401,085 + +3.0 401,085 + -1.1 401,086 - -2.9 401,086 - +2.4 401,115 + +1.7 401,116 - +0.9 401,137 + -1.6 401,138 - +0.9 401,157 + -1.2 401,158 - -0.2 401,180 + -2.9 401,180 + -1.2 401,180 + +4.1 401,180 + -0.5 401,180 + -0.7 401,181 - +0.3 401,181 - -1.2 401,203 + -1.1 401,204 - +2.1 401,204 - +0.9 401,204 - -0.6 401,204 - +1.4 401,204 - +0.5 401,204 - +1.8 401,213 + -2.1 401,214 - +0.1 401,256 + +1.1 401,256 + +0.6 401,256 + -2.3 401,256 + -0.5 401,256 + -2.8 401,256 + -1.6 401,256 + -1.3 401,256 + -2.2 401,256 + +1.1 401,256 + +0.5 401,256 + +0.5 401,256 + -1.2 401,256 + -1.4 401,256 + -0.0 401,256 + +0.1 401,256 + +0.5 401,256 + +2.2 401,257 - +0.9 401,257 - -1.7 401,257 - +1.3 401,257 - +5.3 401,257 - +0.9 401,257 - -1.5 401,257 - +1.5 401,257 - -0.9 401,257 - -0.2 401,260 + +1.2 401,260 + +2.8 401,260 + +2.8 401,260 + -0.9 401,260 + -1.9 401,260 + +1.8 401,260 + -0.2 401,260 + +2.1 401,260 + +2.6 401,260 + -2.7 401,260 + -0.9 401,260 + -0.2 401,260 + +2.9 401,261 - -0.5 401,261 - +0.1 401,261 - +0.6 401,261 - -1.4 401,261 - -0.3 401,261 - -0.2 401,261 - -2.5 401,286 + IAI47_20780 0.16 -1.5 401,389 + IAI47_20780 0.46 +0.3 401,389 + IAI47_20780 0.46 +2.9 401,389 + IAI47_20780 0.46 -1.5 401,389 + IAI47_20780 0.46 -1.7 401,390 - IAI47_20780 0.46 -1.5 401,390 - IAI47_20780 0.46 +2.1 401,390 - IAI47_20780 0.46 +1.2 401,405 + IAI47_20780 0.51 +0.1 401,405 + IAI47_20780 0.51 -0.9 401,405 + IAI47_20780 0.51 -1.5 401,405 + IAI47_20780 0.51 -0.4 401,406 - IAI47_20780 0.51 -2.1 401,406 - IAI47_20780 0.51 -0.2 401,406 - IAI47_20780 0.51 +1.8 401,406 - IAI47_20780 0.51 +1.6 401,602 + +3.6 401,602 + +1.6 401,602 + -1.5 401,603 - +0.9 401,648 + -0.7 401,683 + -0.2 401,683 + -1.2 401,683 + +2.1 401,684 - -2.2 401,684 - -0.9 401,684 - -0.5 401,789 + IAI47_20785 0.31 -1.1 401,790 - IAI47_20785 0.31 -0.5 401,790 - IAI47_20785 0.31 +0.6 401,807 + IAI47_20785 0.35 +1.1 401,808 - IAI47_20785 0.35 +0.9 401,808 - IAI47_20785 0.35 +4.0 401,825 + IAI47_20785 0.38 -1.2 401,826 - IAI47_20785 0.39 +2.6 401,826 - IAI47_20785 0.39 +1.4 401,826 - IAI47_20785 0.39 +2.3 401,888 + IAI47_20785 0.51 +0.8 401,888 + IAI47_20785 0.51 +2.3 401,889 - IAI47_20785 0.52 -2.9 401,890 + IAI47_20785 0.52 +2.1 401,906 - IAI47_20785 0.55 -1.4 401,913 - IAI47_20785 0.56 +1.5 401,913 - IAI47_20785 0.56 +2.9 401,997 - IAI47_20785 0.74 +1.1 401,997 - IAI47_20785 0.74 -2.7 402,004 + IAI47_20785 0.75 +2.1 402,005 - IAI47_20785 0.75 -1.2 402,029 + IAI47_20785 0.80 -0.9 402,030 - IAI47_20785 0.80 +1.6 402,039 - IAI47_20785 0.82 +0.8 402,043 + IAI47_20785 0.83 -0.2 402,046 + IAI47_20785 0.84 +2.1 402,046 + IAI47_20785 0.84 -0.7 402,046 + IAI47_20785 0.84 +0.1 402,046 + IAI47_20785 0.84 -2.3 402,046 + IAI47_20785 0.84 -1.4 402,047 - IAI47_20785 0.84 +1.1 402,047 - IAI47_20785 0.84 -0.9 402,049 + IAI47_20785 0.84 +1.9 402,049 + IAI47_20785 0.84 +1.1 402,050 - IAI47_20785 0.84 -0.2 402,050 - IAI47_20785 0.84 +0.9 402,050 - IAI47_20785 0.84 -0.9 402,050 - IAI47_20785 0.84 +1.9 402,050 - IAI47_20785 0.84 -0.2 402,050 - IAI47_20785 0.84 -3.0 402,117 + -1.1 402,117 + +2.9 402,118 - -0.2 402,129 + +0.5 402,129 + +1.4
Or see this region's nucleotide sequence