Strain Fitness in Pantoea sp. MT58 around IAI47_16405

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,473,509	+		IAI47_16400	0.28	+2.7
3,473,509	+		IAI47_16400	0.28	+2.6
3,473,509	+		IAI47_16400	0.28	-1.3
3,473,509	+		IAI47_16400	0.28	-3.1
3,473,513	-		IAI47_16400	0.28	-2.1
3,473,532	+		IAI47_16400	0.30	-1.3
3,473,532	+		IAI47_16400	0.30	-0.8
3,473,532	+		IAI47_16400	0.30	+0.7
3,473,532	+		IAI47_16400	0.30	+0.5
3,473,533	-		IAI47_16400	0.30	+0.0
3,473,561	+		IAI47_16400	0.33	-0.6
3,473,562	-		IAI47_16400	0.33	-0.8
3,473,607	+		IAI47_16400	0.37	-2.1
3,473,607	+		IAI47_16400	0.37	+0.7
3,473,607	+		IAI47_16400	0.37	-1.4
3,473,607	+		IAI47_16400	0.37	+2.1
3,473,607	+		IAI47_16400	0.37	-1.1
3,473,607	+		IAI47_16400	0.37	+0.6
3,473,607	+		IAI47_16400	0.37	+1.4
3,473,608	-		IAI47_16400	0.37	-1.7
3,473,608	-		IAI47_16400	0.37	-2.7
3,473,608	-		IAI47_16400	0.37	+0.7
3,473,610	+		IAI47_16400	0.37	-1.8
3,473,610	+		IAI47_16400	0.37	-2.0
3,473,610	+		IAI47_16400	0.37	+0.2
3,473,611	-		IAI47_16400	0.37	-1.7
3,473,613	+		IAI47_16400	0.38	+0.9
3,473,613	+		IAI47_16400	0.38	-1.4
3,473,613	+		IAI47_16400	0.38	+1.2
3,473,614	-		IAI47_16400	0.38	-0.8
3,473,614	-		IAI47_16400	0.38	+1.1
3,473,614	-		IAI47_16400	0.38	+1.3
3,473,614	-		IAI47_16400	0.38	-0.2
3,473,621	-		IAI47_16400	0.38	+0.7
3,473,656	+		IAI47_16400	0.41	+1.1
3,473,656	+		IAI47_16400	0.41	-2.2
3,473,656	+		IAI47_16400	0.41	+0.0
3,473,656	+		IAI47_16400	0.41	+2.0
3,473,657	-		IAI47_16400	0.42	-1.2
3,473,657	-		IAI47_16400	0.42	-0.3
3,473,657	-		IAI47_16400	0.42	-0.3
3,473,657	-		IAI47_16400	0.42	+4.1
3,473,657	-		IAI47_16400	0.42	+0.2
3,473,692	+		IAI47_16400	0.45	+2.6
3,473,692	+		IAI47_16400	0.45	+4.0
3,473,692	+		IAI47_16400	0.45	+2.9
3,473,693	-		IAI47_16400	0.45	+0.1
3,473,693	-		IAI47_16400	0.45	-0.3
3,473,716	+		IAI47_16400	0.47	-0.4
3,473,741	+		IAI47_16400	0.49	-2.0
3,473,741	+		IAI47_16400	0.49	+1.2
3,473,741	+		IAI47_16400	0.49	-1.0
3,473,741	+		IAI47_16400	0.49	+0.6
3,473,742	-		IAI47_16400	0.49	-1.8
3,473,798	+		IAI47_16400	0.54	+2.0
3,473,798	+		IAI47_16400	0.54	+1.9
3,473,798	+		IAI47_16400	0.54	+2.2
3,473,798	+		IAI47_16400	0.54	+0.1
3,473,798	+		IAI47_16400	0.54	+2.7
3,473,798	+		IAI47_16400	0.54	+2.0
3,473,798	+		IAI47_16400	0.54	+1.6
3,473,798	+		IAI47_16400	0.54	-0.3
3,473,798	+		IAI47_16400	0.54	+0.5
3,473,798	+		IAI47_16400	0.54	+1.8
3,473,799	-		IAI47_16400	0.54	-0.3
3,473,799	-		IAI47_16400	0.54	-0.3
3,473,799	-		IAI47_16400	0.54	+2.6
3,473,799	-		IAI47_16400	0.54	+2.2
3,473,799	-		IAI47_16400	0.54	+0.0
3,473,799	-		IAI47_16400	0.54	+1.1
3,473,799	-		IAI47_16400	0.54	+0.7
3,473,799	-		IAI47_16400	0.54	+0.0
3,473,800	+		IAI47_16400	0.55	-0.3
3,473,833	+		IAI47_16400	0.58	+1.0
3,473,833	+		IAI47_16400	0.58	+1.9
3,473,833	+		IAI47_16400	0.58	-0.5
3,473,833	+		IAI47_16400	0.58	-1.3
3,473,833	+		IAI47_16400	0.58	-0.8
3,473,834	-		IAI47_16400	0.58	-1.4
3,473,834	-		IAI47_16400	0.58	-0.8
3,473,834	-		IAI47_16400	0.58	+1.3
3,473,834	-		IAI47_16400	0.58	-1.7
3,473,834	-		IAI47_16400	0.58	-0.7
3,473,861	+		IAI47_16400	0.60	-2.1
3,473,861	+		IAI47_16400	0.60	+0.7
3,473,861	+		IAI47_16400	0.60	-2.8
3,473,862	-		IAI47_16400	0.60	+3.1
3,473,862	-		IAI47_16400	0.60	-1.7
3,473,862	-		IAI47_16400	0.60	+4.2
3,473,862	-		IAI47_16400	0.60	-1.1
3,473,862	-				+2.3
3,473,862	-		IAI47_16400	0.60	-2.5
3,473,897	+		IAI47_16400	0.63	+1.8
3,473,897	+		IAI47_16400	0.63	-0.3
3,473,898	-		IAI47_16400	0.63	+1.6
3,473,898	-		IAI47_16400	0.63	-2.5
3,473,898	-		IAI47_16400	0.63	+2.3
3,473,905	+		IAI47_16400	0.64	+0.7
3,473,905	+		IAI47_16400	0.64	+2.5
3,473,905	+		IAI47_16400	0.64	-2.8
3,473,906	-		IAI47_16400	0.64	-2.2
3,473,909	+		IAI47_16400	0.64	+1.9
3,473,909	+		IAI47_16400	0.64	+0.2
3,473,909	+		IAI47_16400	0.64	+1.8
3,473,909	+		IAI47_16400	0.64	+0.1
3,473,909	+		IAI47_16400	0.64	+3.1
3,473,910	-		IAI47_16400	0.65	+1.0
3,473,910	-		IAI47_16400	0.65	+1.4
3,473,910	-		IAI47_16400	0.65	+1.9
3,473,910	-		IAI47_16400	0.65	+0.7
3,473,910	-		IAI47_16400	0.65	+1.7
3,473,910	-		IAI47_16400	0.65	-0.8
3,473,957	-		IAI47_16400	0.69	+0.3
3,473,997	-		IAI47_16400	0.72	-2.0
3,474,021	+		IAI47_16400	0.75	-0.1
3,474,022	-		IAI47_16400	0.75	-1.1
3,474,077	+		IAI47_16400	0.80	-1.4
3,474,077	+		IAI47_16400	0.80	-2.6
3,474,078	-		IAI47_16400	0.80	+2.3
3,474,078	-		IAI47_16400	0.80	+0.7
3,474,078	-		IAI47_16400	0.80	-0.8
3,474,078	-		IAI47_16400	0.80	+1.5
3,474,078	-		IAI47_16400	0.80	+1.3
3,474,078	-		IAI47_16400	0.80	-2.3
3,474,078	-		IAI47_16400	0.80	+1.9
3,474,097	-		IAI47_16400	0.82	-0.7
3,474,097	-		IAI47_16400	0.82	+0.0
3,474,097	-		IAI47_16400	0.82	-1.4
3,474,109	+		IAI47_16400	0.83	+0.9
3,474,110	-		IAI47_16400	0.83	-1.4
3,474,110	-		IAI47_16400	0.83	+0.1
3,474,157	+		IAI47_16400	0.87	+0.3
3,474,157	+		IAI47_16400	0.87	+3.3
3,474,158	-		IAI47_16400	0.87	-1.0
3,474,158	-		IAI47_16400	0.87	-0.5
3,474,161	+		IAI47_16400	0.87	+1.3
3,474,161	+		IAI47_16400	0.87	+2.1
3,474,161	+		IAI47_16400	0.87	-2.7
3,474,162	-		IAI47_16400	0.88	-1.5
3,474,162	-		IAI47_16400	0.88	-0.4
3,474,162	-		IAI47_16400	0.88	-1.9
3,474,162	-		IAI47_16400	0.88	-2.0
3,474,162	-		IAI47_16400	0.88	-3.0
3,474,162	-		IAI47_16400	0.88	-1.7
3,474,207	+				-1.8
3,474,207	+				-1.8
3,474,207	+				+1.3
3,474,207	+				-0.5
3,474,207	+				-1.8
3,474,207	+				+2.5
3,474,207	+				+2.2
3,474,207	+				+1.8
3,474,207	+				-2.1
3,474,207	+				+3.4
3,474,208	-				+2.2
3,474,208	-				+1.4
3,474,208	-				-2.7
3,474,208	-				+2.5
3,474,208	-				+0.5
3,474,208	-				+2.5
3,474,208	-				+1.3
3,474,208	-				-2.1
3,474,208	-				-0.5
3,474,209	+				+1.8
3,474,209	+				+2.2
3,474,209	+				+0.9
3,474,209	+				+0.0
3,474,209	+				-2.1
3,474,209	+				+1.8
3,474,209	+				+4.1
3,474,209	+				+3.6
3,474,209	+				+0.4
3,474,209	+				-2.4
3,474,209	+				+1.1
3,474,209	+				+1.0
3,474,209	+				-2.8
3,474,209	+				-1.8
3,474,210	-				-1.3
3,474,210	-				-1.1
3,474,210	-				+3.7
3,474,210	-				-1.3
3,474,210	-				+0.4
3,474,210	-				-3.1
3,474,210	-				+3.3
3,474,210	-				+1.1
3,474,210	-				-0.5
3,474,210	-				-1.8
3,474,210	-				-4.7
3,474,210	-				+1.3
3,474,210	-				-1.7
3,474,210	-				+0.2
3,474,210	-				-0.1
3,474,217	+				+1.3
3,474,235	+				-2.6
3,474,235	+				-1.9
3,474,235	+				+2.9
3,474,236	-				-0.2
3,474,236	-				+1.0
3,474,236	-				+1.8
3,474,236	-				-1.6
3,474,238	+				+1.4
3,474,238	+				+1.3
3,474,238	+				+0.4
3,474,239	-				+1.0
3,474,239	-				+0.3
3,474,239	-				+2.2
3,474,239	-				+2.9
3,474,239	-				+0.7
3,474,239	-				+0.0
3,474,282	+				+1.3
3,474,282	+				-3.2
3,474,283	-				-2.1
3,474,283	-				-2.4
3,474,283	-				-2.4
3,474,300	+				+0.0
3,474,300	+				-1.5
3,474,318	+				-2.7
3,474,318	+				-0.1
3,474,318	+				-1.7
3,474,318	+				-1.4
3,474,318	+				-0.8
3,474,319	-				-2.1
3,474,319	-				+0.3
3,474,321	+				+0.9
3,474,322	-				+1.5
3,474,322	-				+1.0
3,474,342	-				-1.5
3,474,342	-				+1.6
3,474,424	-				-1.3
3,474,470	-				-0.5
3,474,607	+		IAI47_16405	0.14	+3.3
3,474,607	+		IAI47_16405	0.14	+0.4
3,474,718	+		IAI47_16405	0.28	+2.3
3,474,719	-		IAI47_16405	0.28	+0.3
3,474,724	+		IAI47_16405	0.29	-0.5
3,474,864	+		IAI47_16405	0.47	+2.3
3,474,865	-		IAI47_16405	0.47	-0.7
3,475,006	-		IAI47_16405	0.65	-1.0
3,475,006	-		IAI47_16405	0.65	+0.3
3,475,008	+		IAI47_16405	0.65	-1.4
3,475,009	-		IAI47_16405	0.65	+0.3
3,475,024	-		IAI47_16405	0.67	+1.3
3,475,058	-		IAI47_16405	0.71	+1.7
3,475,112	+		IAI47_16405	0.78	+1.3
3,475,234	+				+1.5
3,475,285	+				+1.8
3,475,286	-				-1.5
3,475,286	-				-0.5
3,475,286	-				+2.3
3,475,295	+				+1.6
3,475,295	+				+2.0
3,475,295	+				-2.0
3,475,295	+				+4.6
3,475,295	+				-2.9
3,475,295	+				-2.6
3,475,295	+				-2.0
3,475,295	+				+1.7
3,475,295	+				+1.4
3,475,296	-				-1.9
3,475,296	-				+0.5
3,475,299	+				+0.9
3,475,299	+				+0.7
3,475,300	-				-2.6
3,475,317	+				-1.4
3,475,317	+				+2.0
3,475,318	-				-1.3
3,475,326	+				+0.0
3,475,327	-				+1.3
3,475,355	-				-1.4
3,475,643	-		IAI47_16410	0.56	+0.3
3,475,645	+		IAI47_16410	0.57	-2.5
3,475,645	+		IAI47_16410	0.57	-1.4
3,475,645	+		IAI47_16410	0.57	-1.4
3,475,645	+		IAI47_16410	0.57	+1.5
3,475,646	-		IAI47_16410	0.57	-1.7
3,475,646	-		IAI47_16410	0.57	-1.1
3,475,646	-		IAI47_16410	0.57	-1.0
3,475,646	-		IAI47_16410	0.57	-1.8
3,475,646	-		IAI47_16410	0.57	+0.1
3,475,709	+		IAI47_16410	0.70	-0.3
3,475,709	+		IAI47_16410	0.70	-1.9
3,475,710	-		IAI47_16410	0.71	-2.3
3,475,844	+				-1.6
3,475,844	+				-1.0
3,475,844	+				+1.7
3,475,844	+				-2.1
3,475,844	+				-0.7
3,475,845	-				+1.6
3,475,845	-				-0.1
3,475,845	-				+2.5
3,475,845	-				-1.3
3,475,845	-				+0.7
3,475,900	-				+1.6
3,475,900	-				-1.3
3,475,937	+				+2.4
3,475,938	-				+0.3
3,475,938	-				-1.7
3,475,952	+				+1.0
3,475,965	+				-1.4
3,475,965	+				+2.0
3,475,966	-				+0.3
3,475,966	-				-0.8
3,476,117	-		IAI47_16415	0.15	-2.6
3,476,138	+		IAI47_16415	0.17	-2.3
3,476,138	+		IAI47_16415	0.17	-3.3
3,476,138	+		IAI47_16415	0.17	-1.0
3,476,138	+		IAI47_16415	0.17	-2.3
3,476,139	-		IAI47_16415	0.18	-1.8
3,476,139	-		IAI47_16415	0.18	+0.1
3,476,139	-		IAI47_16415	0.18	+0.5
3,476,139	-		IAI47_16415	0.18	-0.7
3,476,139	-		IAI47_16415	0.18	-1.5
3,476,253	+		IAI47_16415	0.29	+2.9
3,476,253	+		IAI47_16415	0.29	-3.8
3,476,253	+		IAI47_16415	0.29	+0.0
3,476,253	+		IAI47_16415	0.29	-2.1
3,476,253	+		IAI47_16415	0.29	-0.5
3,476,253	+		IAI47_16415	0.29	+0.3
3,476,253	+		IAI47_16415	0.29	-0.1
3,476,254	-		IAI47_16415	0.29	-1.1
3,476,254	-		IAI47_16415	0.29	-0.5
3,476,254	-		IAI47_16415	0.29	+0.8