Strain Fitness in Pantoea sp. MT58 around IAI47_12970

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,743,347	-				+2.2
2,743,364	-				-2.3
2,743,373	+				+1.5
2,743,373	+				-1.7
2,743,396	+				-1.3
2,743,397	-				-2.3
2,743,397	-				+1.1
2,743,423	-		IAI47_12965	0.12	+0.1
2,743,439	+		IAI47_12965	0.14	+0.9
2,743,500	-		IAI47_12965	0.21	-2.3
2,743,540	+		IAI47_12965	0.25	-1.9
2,743,566	+		IAI47_12965	0.28	-2.6
2,743,566	+		IAI47_12965	0.28	+0.8
2,743,566	+		IAI47_12965	0.28	-1.3
2,743,566	+		IAI47_12965	0.28	-2.8
2,743,566	+		IAI47_12965	0.28	-3.4
2,743,566	+		IAI47_12965	0.28	-1.7
2,743,566	+		IAI47_12965	0.28	-1.9
2,743,567	-		IAI47_12965	0.28	-0.9
2,743,567	-		IAI47_12965	0.28	+1.1
2,743,567	-		IAI47_12965	0.28	+3.8
2,743,567	-		IAI47_12965	0.28	-0.5
2,743,567	-		IAI47_12965	0.28	+0.7
2,743,567	-		IAI47_12965	0.28	+1.8
2,743,619	+		IAI47_12965	0.34	-0.1
2,743,619	+		IAI47_12965	0.34	+1.0
2,743,620	-		IAI47_12965	0.34	+0.7
2,743,642	+		IAI47_12965	0.37	+0.8
2,743,642	+		IAI47_12965	0.37	-2.6
2,743,642	+		IAI47_12965	0.37	-0.8
2,743,642	+		IAI47_12965	0.37	+1.7
2,743,643	-		IAI47_12965	0.37	+0.2
2,743,643	-		IAI47_12965	0.37	-1.7
2,743,643	-		IAI47_12965	0.37	-0.9
2,743,643	-		IAI47_12965	0.37	-0.6
2,743,643	-		IAI47_12965	0.37	+0.1
2,743,643	-		IAI47_12965	0.37	-2.2
2,743,672	+		IAI47_12965	0.40	-1.3
2,743,672	+		IAI47_12965	0.40	-2.5
2,743,672	+		IAI47_12965	0.40	-1.7
2,743,672	+		IAI47_12965	0.40	+1.3
2,743,722	+		IAI47_12965	0.46	+1.5
2,743,722	+		IAI47_12965	0.46	-1.9
2,743,722	+		IAI47_12965	0.46	-0.6
2,743,722	+		IAI47_12965	0.46	-1.2
2,743,722	+		IAI47_12965	0.46	-1.1
2,743,722	+		IAI47_12965	0.46	+1.6
2,743,722	+		IAI47_12965	0.46	+1.5
2,743,723	-		IAI47_12965	0.46	-0.1
2,743,723	-		IAI47_12965	0.46	+1.7
2,743,794	-		IAI47_12965	0.54	+1.5
2,743,794	-		IAI47_12965	0.54	+3.5
2,743,794	-		IAI47_12965	0.54	-0.9
2,743,870	+		IAI47_12965	0.62	-0.9
2,743,871	-		IAI47_12965	0.62	-1.8
2,743,871	-		IAI47_12965	0.62	-0.1
2,743,926	+		IAI47_12965	0.68	-0.0
2,743,926	+		IAI47_12965	0.68	-1.8
2,743,927	-		IAI47_12965	0.68	+2.0
2,743,927	-		IAI47_12965	0.68	+1.2
2,743,942	+		IAI47_12965	0.70	-1.6
2,743,942	+		IAI47_12965	0.70	+1.2
2,743,942	+		IAI47_12965	0.70	+1.9
2,743,942	+		IAI47_12965	0.70	-1.2
2,743,943	-		IAI47_12965	0.70	+0.8
2,744,096	+		IAI47_12965	0.87	-1.6
2,744,097	-		IAI47_12965	0.87	-0.3
2,744,107	+		IAI47_12965	0.88	-1.2
2,744,147	+				-0.9
2,744,278	+				+4.4
2,744,279	-				+4.6
2,744,279	-				-1.8
2,744,279	-				+1.2
2,744,393	+				-0.1
2,744,394	-				-0.8
2,744,463	+				-0.8
2,744,463	+				+2.8
2,744,464	-				+3.5
2,744,464	-				-1.8
2,744,464	-				-0.1
2,744,576	+		IAI47_12970	0.14	+0.7
2,744,576	+		IAI47_12970	0.14	+3.4
2,744,576	+		IAI47_12970	0.14	-1.7
2,744,576	+		IAI47_12970	0.14	-2.0
2,744,577	-		IAI47_12970	0.14	-0.9
2,744,577	-		IAI47_12970	0.14	+2.6
2,744,577	-		IAI47_12970	0.14	+2.3
2,744,577	-		IAI47_12970	0.14	+2.1
2,744,577	-		IAI47_12970	0.14	+1.0
2,744,577	-		IAI47_12970	0.14	-2.0
2,744,577	-		IAI47_12970	0.14	-1.7
2,744,577	-		IAI47_12970	0.14	-1.1
2,744,577	-		IAI47_12970	0.14	-3.1
2,744,611	-		IAI47_12970	0.16	+1.9
2,744,611	-		IAI47_12970	0.16	-2.6
2,744,719	+		IAI47_12970	0.22	+1.2
2,744,719	+		IAI47_12970	0.22	+2.5
2,744,751	-		IAI47_12970	0.24	-1.6
2,744,810	+		IAI47_12970	0.27	+2.9
2,744,811	-		IAI47_12970	0.27	+2.2
2,744,811	-		IAI47_12970	0.27	+0.5
2,744,811	-		IAI47_12970	0.27	+2.0
2,744,826	+		IAI47_12970	0.28	-0.6
2,744,826	+		IAI47_12970	0.28	+0.2
2,745,018	+		IAI47_12970	0.39	-1.1
2,745,019	-		IAI47_12970	0.39	-1.7
2,745,064	+		IAI47_12970	0.42	+1.2
2,745,064	+		IAI47_12970	0.42	-1.1
2,745,064	+		IAI47_12970	0.42	-1.2
2,745,064	+		IAI47_12970	0.42	+0.2
2,745,065	-		IAI47_12970	0.42	-0.1
2,745,065	-		IAI47_12970	0.42	+1.7
2,745,076	+		IAI47_12970	0.43	+2.1
2,745,076	+		IAI47_12970	0.43	-0.6
2,745,077	-		IAI47_12970	0.43	-0.8
2,745,077	-		IAI47_12970	0.43	+1.0
2,745,077	-		IAI47_12970	0.43	+1.5
2,745,149	+		IAI47_12970	0.47	-1.3
2,745,149	+		IAI47_12970	0.47	-1.5
2,745,149	+		IAI47_12970	0.47	+1.2
2,745,150	-		IAI47_12970	0.47	-0.9
2,745,150	-		IAI47_12970	0.47	-0.6
2,745,150	-		IAI47_12970	0.47	-2.3
2,745,184	+		IAI47_12970	0.49	+0.4
2,745,185	-		IAI47_12970	0.49	-1.1
2,745,185	-		IAI47_12970	0.49	+1.8
2,745,262	+		IAI47_12970	0.53	+0.8
2,745,262	+		IAI47_12970	0.53	-1.8
2,745,262	+		IAI47_12970	0.53	-0.2
2,745,262	+		IAI47_12970	0.53	+1.8
2,745,262	+		IAI47_12970	0.53	-3.5
2,745,263	-		IAI47_12970	0.54	-0.3
2,745,263	-		IAI47_12970	0.54	+1.6
2,745,263	-		IAI47_12970	0.54	-3.5
2,745,263	-		IAI47_12970	0.54	-2.0
2,745,300	-		IAI47_12970	0.56	-2.5
2,745,349	-		IAI47_12970	0.59	+2.2
2,745,355	+		IAI47_12970	0.59	-2.3
2,745,355	+		IAI47_12970	0.59	-0.8
2,745,355	+		IAI47_12970	0.59	-1.2
2,745,355	+		IAI47_12970	0.59	-0.5
2,745,355	+		IAI47_12970	0.59	+1.0
2,745,425	-		IAI47_12970	0.63	-0.6
2,745,425	-		IAI47_12970	0.63	-0.6
2,745,448	+		IAI47_12970	0.64	-2.1
2,745,449	-		IAI47_12970	0.64	+1.7
2,745,465	+		IAI47_12970	0.65	+1.0
2,745,466	-		IAI47_12970	0.65	-2.3
2,745,512	-		IAI47_12970	0.68	-4.0
2,745,512	-		IAI47_12970	0.68	-0.8
2,745,553	-		IAI47_12970	0.70	-1.9
2,745,673	-		IAI47_12970	0.77	-1.5
2,745,673	-		IAI47_12970	0.77	-1.3
2,745,673	-		IAI47_12970	0.77	+0.7
2,745,766	+		IAI47_12970	0.83	-0.3
2,745,856	+		IAI47_12970	0.88	-0.3
2,745,988	+				-1.7
2,745,988	+				+0.1
2,745,988	+				-2.3
2,745,988	+				+2.5
2,746,031	+				-0.3
2,746,032	-				+0.2
2,746,032	-				+1.2
2,746,032	-				-0.8
2,746,056	-				-2.4
2,746,060	+				-1.8
2,746,061	-				-1.3
2,746,130	+				+2.3
2,746,130	+				+0.1
2,746,130	+				+1.5
2,746,130	+				-0.3
2,746,130	+				-0.2
2,746,130	+				-1.7
2,746,130	+				+2.1
2,746,130	+				-1.1
2,746,130	+				-1.9
2,746,130	+				-2.5
2,746,131	-				-0.1
2,746,131	-				-0.8
2,746,131	-				-1.5
2,746,131	-				+1.1
2,746,131	-				-1.5
2,746,131	-				-0.3
2,746,144	+				+0.5
2,746,145	-				-1.8
2,746,154	+				+0.8
2,746,183	+				-0.9
2,746,184	-				+1.7
2,746,222	-				-1.2
2,746,270	+		IAI47_12975	0.14	+2.8
2,746,270	+		IAI47_12975	0.14	+1.1
2,746,270	+		IAI47_12975	0.14	-1.7
2,746,359	+		IAI47_12975	0.22	-0.3
2,746,359	+		IAI47_12975	0.22	-1.6
2,746,359	+		IAI47_12975	0.22	-1.1
2,746,359	+		IAI47_12975	0.22	-0.3
2,746,359	+		IAI47_12975	0.22	+0.5
2,746,359	+		IAI47_12975	0.22	+2.2
2,746,359	+		IAI47_12975	0.22	-1.2
2,746,359	+		IAI47_12975	0.22	-2.2
2,746,360	-		IAI47_12975	0.23	-2.1
2,746,360	-		IAI47_12975	0.23	-2.2
2,746,360	-		IAI47_12975	0.23	+3.6
2,746,360	-		IAI47_12975	0.23	-2.5
2,746,361	+		IAI47_12975	0.23	-0.3
2,746,361	+		IAI47_12975	0.23	-2.4
2,746,361	+		IAI47_12975	0.23	+1.0
2,746,361	+		IAI47_12975	0.23	+0.9
2,746,361	+		IAI47_12975	0.23	+1.8
2,746,361	+		IAI47_12975	0.23	+0.9
2,746,361	+		IAI47_12975	0.23	+0.2
2,746,361	+		IAI47_12975	0.23	-2.6
2,746,362	-		IAI47_12975	0.23	+1.3
2,746,362	-		IAI47_12975	0.23	+1.9
2,746,362	-		IAI47_12975	0.23	-1.8
2,746,362	-		IAI47_12975	0.23	-0.5
2,746,362	-		IAI47_12975	0.23	+1.3
2,746,362	-		IAI47_12975	0.23	+0.3
2,746,362	-		IAI47_12975	0.23	+4.6
2,746,362	-		IAI47_12975	0.23	-2.1
2,746,382	+		IAI47_12975	0.25	-0.8
2,746,382	+		IAI47_12975	0.25	-1.8
2,746,382	+		IAI47_12975	0.25	+1.1
2,746,382	+		IAI47_12975	0.25	-1.8
2,746,382	+		IAI47_12975	0.25	+1.4
2,746,383	-		IAI47_12975	0.25	-1.0
2,746,383	-		IAI47_12975	0.25	-2.0
2,746,383	-		IAI47_12975	0.25	-2.3
2,746,383	-		IAI47_12975	0.25	-0.6
2,746,386	+		IAI47_12975	0.25	-0.3
2,746,386	+		IAI47_12975	0.25	+0.5
2,746,386	+		IAI47_12975	0.25	+3.2
2,746,386	+		IAI47_12975	0.25	+0.4
2,746,386	+		IAI47_12975	0.25	+2.4
2,746,386	+		IAI47_12975	0.25	+1.2
2,746,386	+		IAI47_12975	0.25	+2.1
2,746,386	+		IAI47_12975	0.25	-0.8
2,746,387	-		IAI47_12975	0.25	-1.3
2,746,387	-		IAI47_12975	0.25	+5.3
2,746,387	-		IAI47_12975	0.25	+1.6
2,746,387	-		IAI47_12975	0.25	+0.1
2,746,387	-		IAI47_12975	0.25	+2.0
2,746,387	-		IAI47_12975	0.25	-0.8
2,746,387	-		IAI47_12975	0.25	-0.9
2,746,387	-		IAI47_12975	0.25	+1.2
2,746,387	-		IAI47_12975	0.25	-1.6
2,746,387	-		IAI47_12975	0.25	-2.2
2,746,387	-		IAI47_12975	0.25	-0.3
2,746,392	+		IAI47_12975	0.26	-2.3
2,746,392	+		IAI47_12975	0.26	-1.6
2,746,392	+		IAI47_12975	0.26	-1.2
2,746,392	+		IAI47_12975	0.26	+1.7
2,746,392	+		IAI47_12975	0.26	+1.4
2,746,392	+		IAI47_12975	0.26	+2.3
2,746,392	+		IAI47_12975	0.26	+3.4
2,746,393	-		IAI47_12975	0.26	-2.9
2,746,393	-		IAI47_12975	0.26	-0.9
2,746,393	-		IAI47_12975	0.26	+1.0
2,746,393	-		IAI47_12975	0.26	+0.8
2,746,393	-		IAI47_12975	0.26	+1.1
2,746,393	-		IAI47_12975	0.26	-1.1
2,746,393	-		IAI47_12975	0.26	+1.5
2,746,393	-		IAI47_12975	0.26	-0.1
2,746,505	+		IAI47_12975	0.37	-0.6
2,746,506	-		IAI47_12975	0.37	+0.1
2,746,506	-		IAI47_12975	0.37	-2.1
2,746,556	+		IAI47_12975	0.42	+0.7
2,746,556	+		IAI47_12975	0.42	-0.3
2,746,556	+		IAI47_12975	0.42	-2.3
2,746,556	+		IAI47_12975	0.42	-1.9
2,746,576	-		IAI47_12975	0.44	-1.3
2,746,598	+		IAI47_12975	0.46	-0.6
2,746,598	+		IAI47_12975	0.46	+2.0
2,746,610	+		IAI47_12975	0.48	-1.5
2,746,610	+		IAI47_12975	0.48	+3.2
2,746,610	+		IAI47_12975	0.48	+1.4
2,746,610	+		IAI47_12975	0.48	+0.9
2,746,610	+		IAI47_12975	0.48	-1.2
2,746,610	+		IAI47_12975	0.48	-2.2
2,746,610	+		IAI47_12975	0.48	-1.6
2,746,610	+		IAI47_12975	0.48	+0.1
2,746,610	+		IAI47_12975	0.48	+0.2
2,746,611	-		IAI47_12975	0.48	+1.7
2,746,611	-		IAI47_12975	0.48	+2.0
2,746,611	-		IAI47_12975	0.48	-1.2
2,746,611	-		IAI47_12975	0.48	-0.1
2,746,611	-		IAI47_12975	0.48	+1.4
2,746,627	+		IAI47_12975	0.49	+3.0
2,746,640	+		IAI47_12975	0.50	-2.5
2,746,753	+		IAI47_12975	0.62	+3.0
2,746,753	+		IAI47_12975	0.62	-0.6
2,746,753	+		IAI47_12975	0.62	-1.0
2,746,753	+		IAI47_12975	0.62	-2.1
2,746,753	+		IAI47_12975	0.62	+0.9
2,746,753	+		IAI47_12975	0.62	-2.3
2,746,753	+		IAI47_12975	0.62	-1.6
2,746,754	-		IAI47_12975	0.62	-2.7
2,746,754	-		IAI47_12975	0.62	-1.1
2,746,754	-		IAI47_12975	0.62	+2.2
2,746,754	-		IAI47_12975	0.62	-1.9
2,746,754	-		IAI47_12975	0.62	-1.2
2,746,754	-		IAI47_12975	0.62	-2.6
2,746,754	-		IAI47_12975	0.62	-2.7
2,746,754	-		IAI47_12975	0.62	-1.5
2,746,851	+		IAI47_12975	0.72	-2.3
2,746,851	+		IAI47_12975	0.72	-1.5
2,746,852	-		IAI47_12975	0.72	-0.8
2,747,002	+		IAI47_12975	0.87	+0.1
2,747,032	+		IAI47_12975	0.90	-1.6
2,747,032	+		IAI47_12975	0.90	-0.5
2,747,051	+				+1.2