Strain Fitness in Pantoea sp. MT58 around IAI47_10335

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,186,281	+				-2.9
2,186,282	-				-2.4
2,186,282	-				+3.3
2,186,282	-				+2.0
2,186,282	-				-0.5
2,186,282	-				+0.0
2,186,282	-				-2.1
2,186,282	-				+1.7
2,186,282	-				-0.8
2,186,282	-				+1.3
2,186,285	+				+3.6
2,186,285	+				+1.9
2,186,285	+				+1.4
2,186,286	-				+3.3
2,186,286	-				+0.9
2,186,308	+				+2.0
2,186,308	+				+0.5
2,186,308	+				+0.6
2,186,315	+				-1.0
2,186,315	+				-1.1
2,186,316	-				+2.6
2,186,316	-				-1.5
2,186,325	+				-0.3
2,186,325	+				+2.8
2,186,325	+				+2.5
2,186,326	-				-0.5
2,186,326	-				+0.0
2,186,388	+				+2.7
2,186,388	+				-0.4
2,186,389	-				-1.0
2,186,389	-				+0.7
2,186,389	-				+3.0
2,186,389	-				+0.5
2,186,389	-				+1.1
2,186,389	-				-1.5
2,186,434	-		IAI47_10330	0.15	+2.0
2,186,519	-		IAI47_10330	0.24	+0.0
2,186,519	-		IAI47_10330	0.24	+0.6
2,186,519	-		IAI47_10330	0.24	+0.3
2,186,533	-		IAI47_10330	0.25	-1.5
2,186,533	-		IAI47_10330	0.25	-2.0
2,186,573	+		IAI47_10330	0.29	-1.0
2,186,574	-		IAI47_10330	0.30	+0.5
2,186,595	+		IAI47_10330	0.32	-3.0
2,186,595	+		IAI47_10330	0.32	+2.0
2,186,595	+		IAI47_10330	0.32	+1.6
2,186,596	-		IAI47_10330	0.32	-1.0
2,186,646	+		IAI47_10330	0.37	-1.4
2,186,647	-		IAI47_10330	0.37	-1.9
2,186,647	-		IAI47_10330	0.37	-1.8
2,186,647	-		IAI47_10330	0.37	-0.8
2,186,765	-		IAI47_10330	0.50	-0.3
2,186,775	+		IAI47_10330	0.51	+0.5
2,186,775	+		IAI47_10330	0.51	+1.5
2,186,829	+		IAI47_10330	0.57	-0.3
2,186,829	+		IAI47_10330	0.57	+1.6
2,186,829	+		IAI47_10330	0.57	+2.6
2,186,829	+		IAI47_10330	0.57	-1.4
2,186,829	+		IAI47_10330	0.57	-1.3
2,186,830	-		IAI47_10330	0.57	-1.4
2,186,830	-		IAI47_10330	0.57	+1.0
2,186,954	+		IAI47_10330	0.70	+3.3
2,187,074	+		IAI47_10330	0.83	-1.1
2,187,122	+		IAI47_10330	0.88	-2.1
2,187,122	+		IAI47_10330	0.88	+0.9
2,187,122	+		IAI47_10330	0.88	+3.7
2,187,131	-		IAI47_10330	0.89	-0.5
2,187,131	-		IAI47_10330	0.89	-0.3
2,187,146	+				-0.4
2,187,146	+				-1.3
2,187,146	+				-1.0
2,187,146	+				+0.1
2,187,146	+				-1.3
2,187,146	+				-1.1
2,187,147	-				+1.6
2,187,159	+				-1.8
2,187,160	-				-1.7
2,187,230	+				-1.8
2,187,230	+				-1.5
2,187,271	+				+1.7
2,187,335	+				+1.0
2,187,336	-				+3.6
2,187,340	+				-1.7
2,187,367	-				+1.6
2,187,419	-		IAI47_10335	0.10	-0.8
2,187,419	-		IAI47_10335	0.10	-0.8
2,187,425	+		IAI47_10335	0.11	+1.1
2,187,425	+		IAI47_10335	0.11	+1.0
2,187,426	-		IAI47_10335	0.11	+0.7
2,187,426	-		IAI47_10335	0.11	-1.3
2,187,426	-		IAI47_10335	0.11	-1.9
2,187,426	-		IAI47_10335	0.11	+1.9
2,187,426	-		IAI47_10335	0.11	+1.6
2,187,426	-		IAI47_10335	0.11	-2.4
2,187,431	+		IAI47_10335	0.11	+0.7
2,187,432	-		IAI47_10335	0.11	+1.2
2,187,432	-		IAI47_10335	0.11	-1.1
2,187,432	-		IAI47_10335	0.11	-0.8
2,187,479	+		IAI47_10335	0.15	-1.5
2,187,521	+		IAI47_10335	0.18	-1.8
2,187,521	+		IAI47_10335	0.18	-2.2
2,187,522	-		IAI47_10335	0.18	-0.3
2,187,522	-		IAI47_10335	0.18	-0.3
2,187,522	-		IAI47_10335	0.18	-2.3
2,187,522	-		IAI47_10335	0.18	+0.3
2,187,522	-		IAI47_10335	0.18	+0.7
2,187,522	-		IAI47_10335	0.18	-3.1
2,187,522	-		IAI47_10335	0.18	+1.0
2,187,522	-		IAI47_10335	0.18	-1.3
2,187,569	+		IAI47_10335	0.21	-1.3
2,187,569	+		IAI47_10335	0.21	+2.5
2,187,570	-		IAI47_10335	0.21	-1.1
2,187,570	-		IAI47_10335	0.21	+1.9
2,187,570	-		IAI47_10335	0.21	-1.5
2,187,570	-		IAI47_10335	0.21	+0.5
2,187,626	+		IAI47_10335	0.25	-1.3
2,187,626	+		IAI47_10335	0.25	+0.0
2,187,626	+		IAI47_10335	0.25	-2.7
2,187,626	+		IAI47_10335	0.25	+1.5
2,187,627	-		IAI47_10335	0.25	+0.5
2,187,627	-		IAI47_10335	0.25	-1.5
2,187,627	-		IAI47_10335	0.25	-1.0
2,187,629	+		IAI47_10335	0.25	-0.5
2,187,629	+		IAI47_10335	0.25	-2.1
2,187,630	-		IAI47_10335	0.26	-2.0
2,187,630	-		IAI47_10335	0.26	-1.1
2,187,630	-		IAI47_10335	0.26	+1.0
2,187,719	+		IAI47_10335	0.32	-1.0
2,187,740	+		IAI47_10335	0.33	+1.3
2,187,740	+		IAI47_10335	0.33	+2.8
2,187,741	-		IAI47_10335	0.33	+4.3
2,187,885	-		IAI47_10335	0.44	-1.5
2,187,947	-		IAI47_10335	0.48	+1.9
2,187,959	+		IAI47_10335	0.49	-1.4
2,188,028	+		IAI47_10335	0.54	-1.0
2,188,029	-		IAI47_10335	0.54	-1.3
2,188,029	-		IAI47_10335	0.54	+0.0
2,188,029	-		IAI47_10335	0.54	-1.5
2,188,040	+		IAI47_10335	0.55	+0.3
2,188,040	+		IAI47_10335	0.55	-0.3
2,188,040	+		IAI47_10335	0.55	-2.3
2,188,041	-		IAI47_10335	0.55	+2.1
2,188,041	-		IAI47_10335	0.55	-0.4
2,188,041	-		IAI47_10335	0.55	-1.4
2,188,041	-		IAI47_10335	0.55	-1.1
2,188,041	-		IAI47_10335	0.55	-1.7
2,188,113	-		IAI47_10335	0.60	-1.0
2,188,130	+		IAI47_10335	0.61	+2.9
2,188,136	+		IAI47_10335	0.62	+1.5
2,188,302	-		IAI47_10335	0.74	+1.0
2,188,302	-		IAI47_10335	0.74	-0.8
2,188,302	-		IAI47_10335	0.74	+1.5
2,188,361	+		IAI47_10335	0.78	-2.3
2,188,362	-		IAI47_10335	0.78	-1.4
2,188,362	-		IAI47_10335	0.78	-1.0
2,188,451	+		IAI47_10335	0.84	+1.7
2,188,452	-		IAI47_10335	0.84	+0.2
2,188,624	-				+2.5
2,188,674	+				-0.5
2,188,674	+				-1.0
2,188,674	+				-0.3
2,188,674	+				+2.8
2,188,674	+				-2.2
2,188,674	+				-1.0
2,188,674	+				-0.2
2,188,675	-				+0.0
2,188,675	-				-0.3
2,188,675	-				-0.8
2,188,675	-				-0.0
2,188,675	-				+2.5
2,188,675	-				-0.2
2,188,675	-				-1.1
2,188,675	-				+3.0
2,188,675	-				+0.0
2,188,675	-				-1.5
2,188,695	+				+0.0
2,188,695	+				+2.3
2,188,696	-				-1.0
2,188,747	+				-1.3
2,188,751	-				-0.9
2,188,751	-				+0.6
2,188,754	-				-0.7
2,188,754	-				-1.9
2,188,754	-				-0.8
2,188,755	+				-0.5
2,188,761	-				-0.5
2,188,781	+				-1.0
2,188,782	-				+1.0
2,188,782	-				-1.9
2,188,782	-				+0.0
2,188,801	+				+1.3
2,188,801	+				-2.3
2,188,801	+				-0.7
2,188,802	-				-2.2
2,188,802	-				-1.0
2,188,805	+				-1.5
2,188,806	-				-1.1
2,188,830	-				-1.9
2,188,830	-				+2.0
2,188,854	+				+1.6
2,188,862	+				-1.4
2,188,862	+				+0.5
2,188,862	+				-0.3
2,188,862	+				+1.9
2,188,863	-				+2.0
2,188,863	-				-0.8
2,188,899	-				-2.2
2,188,899	-				-2.2
2,189,127	+		IAI47_10340	0.22	-0.3
2,189,128	-		IAI47_10340	0.22	+0.0
2,189,128	-		IAI47_10340	0.22	+1.2
2,189,128	-		IAI47_10340	0.22	-1.1
2,189,240	+		IAI47_10340	0.32	-0.8
2,189,240	+		IAI47_10340	0.32	-1.0
2,189,241	-		IAI47_10340	0.32	+3.6
2,189,241	-		IAI47_10340	0.32	-2.3
2,189,242	+		IAI47_10340	0.32	-2.0
2,189,243	-		IAI47_10340	0.32	-1.9
2,189,273	+		IAI47_10340	0.34	-2.1
2,189,274	-		IAI47_10340	0.35	-1.7
2,189,398	+		IAI47_10340	0.45	-0.5
2,189,399	-		IAI47_10340	0.45	-2.3
2,189,419	+		IAI47_10340	0.47	-0.8
2,189,518	+		IAI47_10340	0.55	-0.3
2,189,519	-		IAI47_10340	0.55	+1.6
2,189,519	-		IAI47_10340	0.55	-1.0
2,189,519	-		IAI47_10340	0.55	-2.8
2,189,519	-		IAI47_10340	0.55	-1.4
2,189,534	+		IAI47_10340	0.57	-1.8
2,189,534	+		IAI47_10340	0.57	-2.3
2,189,535	-		IAI47_10340	0.57	-1.8
2,189,634	-		IAI47_10340	0.65	-1.7