Strain Fitness in Pantoea sp. MT58 around IAI47_09075

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,917,417	+		IAI47_09070	0.48	-1.2
1,917,417	+		IAI47_09070	0.48	+0.1
1,917,418	-		IAI47_09070	0.48	+2.0
1,917,447	+		IAI47_09070	0.50	-2.4
1,917,447	+		IAI47_09070	0.50	+3.5
1,917,448	-		IAI47_09070	0.50	-0.5
1,917,448	-		IAI47_09070	0.50	-0.2
1,917,448	-		IAI47_09070	0.50	+1.2
1,917,448	-		IAI47_09070	0.50	+3.1
1,917,519	+		IAI47_09070	0.54	-2.7
1,917,520	-		IAI47_09070	0.54	+0.7
1,917,520	-		IAI47_09070	0.54	+2.3
1,917,520	-		IAI47_09070	0.54	+1.0
1,917,531	+		IAI47_09070	0.55	-1.2
1,917,531	+		IAI47_09070	0.55	+0.5
1,917,531	+		IAI47_09070	0.55	-0.6
1,917,531	+		IAI47_09070	0.55	+0.1
1,917,531	+		IAI47_09070	0.55	-2.2
1,917,531	+		IAI47_09070	0.55	+1.2
1,917,531	+		IAI47_09070	0.55	+2.6
1,917,532	-		IAI47_09070	0.55	-1.4
1,917,532	-		IAI47_09070	0.55	+0.1
1,917,532	-		IAI47_09070	0.55	+3.7
1,917,532	-		IAI47_09070	0.55	+0.5
1,917,532	-		IAI47_09070	0.55	-2.2
1,917,532	-		IAI47_09070	0.55	-1.1
1,917,532	-		IAI47_09070	0.55	-1.7
1,917,534	+		IAI47_09070	0.55	-0.4
1,917,535	-		IAI47_09070	0.55	+0.5
1,917,535	-		IAI47_09070	0.55	+1.4
1,917,535	-		IAI47_09070	0.55	+0.1
1,917,535	-		IAI47_09070	0.55	+2.8
1,917,538	-		IAI47_09070	0.55	+0.5
1,917,538	-		IAI47_09070	0.55	+1.1
1,917,657	+		IAI47_09070	0.63	+4.0
1,917,658	-		IAI47_09070	0.63	+2.8
1,917,663	+		IAI47_09070	0.63	-1.4
1,917,663	+		IAI47_09070	0.63	-0.5
1,917,664	-		IAI47_09070	0.63	-0.2
1,917,664	-		IAI47_09070	0.63	+1.8
1,917,664	-		IAI47_09070	0.63	-1.5
1,917,693	-		IAI47_09070	0.65	-0.2
1,917,735	-		IAI47_09070	0.67	+1.3
1,917,735	-		IAI47_09070	0.67	-1.7
1,917,772	-		IAI47_09070	0.70	+0.4
1,917,772	-		IAI47_09070	0.70	-0.2
1,917,774	-		IAI47_09070	0.70	+1.5
1,917,797	+		IAI47_09070	0.71	-2.1
1,917,807	+		IAI47_09070	0.72	+1.0
1,917,807	+		IAI47_09070	0.72	+3.0
1,917,807	+		IAI47_09070	0.72	-0.9
1,917,807	+		IAI47_09070	0.72	-1.7
1,917,807	+		IAI47_09070	0.72	-0.6
1,917,807	+		IAI47_09070	0.72	-0.4
1,917,808	-		IAI47_09070	0.72	-1.2
1,917,808	-		IAI47_09070	0.72	-2.2
1,917,808	-		IAI47_09070	0.72	+0.5
1,917,808	-		IAI47_09070	0.72	+1.5
1,917,808	-		IAI47_09070	0.72	+0.5
1,917,809	+		IAI47_09070	0.72	-1.1
1,917,809	+		IAI47_09070	0.72	+2.9
1,917,809	+		IAI47_09070	0.72	+1.9
1,917,809	+		IAI47_09070	0.72	-0.2
1,917,809	+		IAI47_09070	0.72	+1.2
1,917,809	+		IAI47_09070	0.72	+2.1
1,917,809	+		IAI47_09070	0.72	-0.2
1,917,810	-		IAI47_09070	0.72	+1.5
1,917,810	-		IAI47_09070	0.72	+1.8
1,917,810	-		IAI47_09070	0.72	-2.2
1,917,810	-		IAI47_09070	0.72	-1.1
1,917,827	+		IAI47_09070	0.73	-0.2
1,917,827	+		IAI47_09070	0.73	-1.2
1,917,827	+		IAI47_09070	0.73	-0.7
1,917,827	+		IAI47_09070	0.73	-0.9
1,917,827	+		IAI47_09070	0.73	-2.3
1,917,828	-		IAI47_09070	0.73	+1.0
1,917,828	-		IAI47_09070	0.73	+2.1
1,917,946	+		IAI47_09070	0.80	+4.2
1,917,947	-		IAI47_09070	0.80	+3.6
1,917,973	-		IAI47_09070	0.82	+0.6
1,917,975	-		IAI47_09070	0.82	+1.8
1,918,010	+		IAI47_09070	0.84	-0.5
1,918,023	-		IAI47_09070	0.85	+0.9
1,918,023	-		IAI47_09070	0.85	+0.5
1,918,035	+		IAI47_09070	0.86	-0.0
1,918,036	-		IAI47_09070	0.86	-1.1
1,918,036	-		IAI47_09070	0.86	-1.6
1,918,037	+		IAI47_09070	0.86	-1.1
1,918,037	+		IAI47_09070	0.86	-0.9
1,918,038	-		IAI47_09070	0.86	-2.0
1,918,038	-		IAI47_09070	0.86	+1.0
1,918,038	-		IAI47_09070	0.86	-0.2
1,918,038	-		IAI47_09070	0.86	+0.5
1,918,038	-		IAI47_09070	0.86	-1.5
1,918,038	-		IAI47_09070	0.86	-0.8
1,918,076	+		IAI47_09070	0.88	+1.1
1,918,111	-				+2.1
1,918,136	+				+2.1
1,918,137	-				-1.2
1,918,161	+				-1.5
1,918,161	+				+0.1
1,918,161	+				+1.0
1,918,161	+				-1.8
1,918,164	+				+0.4
1,918,165	-				+0.4
1,918,165	-				-1.2
1,918,165	-				+3.5
1,918,167	+				-1.2
1,918,167	+				-1.2
1,918,168	-				+1.4
1,918,168	-				-2.2
1,918,168	-				-0.9
1,918,168	-				-0.5
1,918,171	+				+1.0
1,918,171	+				+0.1
1,918,172	-				-0.5
1,918,172	-				+4.8
1,918,175	+				-2.4
1,918,176	-				+0.3
1,918,194	+				+1.4
1,918,194	+				+1.6
1,918,194	+				+1.3
1,918,195	-				-0.2
1,918,195	-				+2.1
1,918,195	-				-2.5
1,918,195	-				+3.0
1,918,195	-				+1.6
1,918,195	-				-1.7
1,918,208	+				-0.5
1,918,251	+				-1.2
1,918,251	+				-1.1
1,918,251	+				-3.2
1,918,251	+				+2.6
1,918,251	+				+0.6
1,918,251	+				-0.0
1,918,251	+				-0.7
1,918,252	-				+4.3
1,918,252	-				-2.7
1,918,266	+				+1.9
1,918,269	+				-0.9
1,918,269	+				-0.9
1,918,270	-				-1.1
1,918,270	-				-0.9
1,918,282	-				-0.4
1,918,321	+				+3.4
1,918,321	+				+2.1
1,918,321	+				-0.2
1,918,321	+				+2.5
1,918,321	+				-2.2
1,918,321	+				-0.2
1,918,322	-				-1.6
1,918,322	-				-0.5
1,918,322	-				-2.4
1,918,322	-				-1.1
1,918,325	+				-2.2
1,918,325	+				-1.1
1,918,325	+				+0.7
1,918,325	+				-0.4
1,918,325	+				-0.2
1,918,325	+				-0.9
1,918,325	+				-2.1
1,918,325	+				+4.0
1,918,325	+				-2.2
1,918,325	+				+1.1
1,918,325	+				-2.4
1,918,325	+				-0.2
1,918,325	+				+3.1
1,918,326	-				+2.7
1,918,326	-				+0.9
1,918,326	-				-0.5
1,918,326	-				+0.8
1,918,326	-				-1.7
1,918,326	-				+0.4
1,918,326	-				-1.1
1,918,326	-				-0.5
1,918,326	-				-2.2
1,918,326	-				-0.7
1,918,326	-				+1.5
1,918,326	-				+1.1
1,918,326	-				-0.7
1,918,326	-				+0.9
1,918,327	+				+1.6
1,918,327	+				-1.0
1,918,327	+				-1.2
1,918,328	-				-3.1
1,918,351	-				-1.5
1,918,351	-				+1.0
1,918,354	+				+0.5
1,918,435	+				+2.1
1,918,435	+				+0.1
1,918,436	-				+0.1
1,918,504	+		IAI47_09075	0.16	+1.1
1,918,505	-		IAI47_09075	0.16	-0.7
1,918,505	-		IAI47_09075	0.16	-2.4
1,918,517	+		IAI47_09075	0.17	+1.8
1,918,518	-		IAI47_09075	0.17	+2.7
1,918,518	-		IAI47_09075	0.17	+2.4
1,918,518	-		IAI47_09075	0.17	-0.7
1,918,547	+		IAI47_09075	0.20	-0.1
1,918,547	+		IAI47_09075	0.20	-1.4
1,918,547	+		IAI47_09075	0.20	-0.7
1,918,547	+		IAI47_09075	0.20	-2.0
1,918,547	+		IAI47_09075	0.20	-2.3
1,918,547	+		IAI47_09075	0.20	+1.1
1,918,547	+		IAI47_09075	0.20	+1.4
1,918,547	+		IAI47_09075	0.20	-1.1
1,918,547	+		IAI47_09075	0.20	-2.1
1,918,547	+		IAI47_09075	0.20	-2.3
1,918,548	-		IAI47_09075	0.20	-2.2
1,918,548	-		IAI47_09075	0.20	-0.9
1,918,548	-		IAI47_09075	0.20	-2.2
1,918,548	-		IAI47_09075	0.20	+2.1
1,918,548	-		IAI47_09075	0.20	-0.2
1,918,548	-		IAI47_09075	0.20	+0.1
1,918,548	-		IAI47_09075	0.20	+1.0
1,918,548	-		IAI47_09075	0.20	-0.2
1,918,548	-		IAI47_09075	0.20	-1.1
1,918,548	-		IAI47_09075	0.20	-2.2
1,918,548	-		IAI47_09075	0.20	-0.7
1,918,548	-		IAI47_09075	0.20	+0.1
1,918,548	-		IAI47_09075	0.20	+1.8
1,918,548	-		IAI47_09075	0.20	-0.9
1,918,557	-		IAI47_09075	0.21	-0.2
1,918,557	-		IAI47_09075	0.21	-1.2
1,918,597	+		IAI47_09075	0.26	-0.2
1,918,602	-		IAI47_09075	0.26	-0.8
1,918,602	-		IAI47_09075	0.26	-1.7
1,918,602	-		IAI47_09075	0.26	+2.2
1,918,622	+		IAI47_09075	0.28	+1.3
1,918,622	+		IAI47_09075	0.28	+1.3
1,918,622	+		IAI47_09075	0.28	-2.3
1,918,689	+		IAI47_09075	0.36	+1.3
1,918,690	-		IAI47_09075	0.36	+1.0
1,918,724	-		IAI47_09075	0.39	+1.1
1,918,735	+		IAI47_09075	0.41	-0.7
1,918,735	+		IAI47_09075	0.41	+0.3
1,918,735	+		IAI47_09075	0.41	-1.2
1,918,735	+		IAI47_09075	0.41	+2.1
1,918,735	+		IAI47_09075	0.41	+0.9
1,918,735	+		IAI47_09075	0.41	+1.1
1,918,735	+		IAI47_09075	0.41	-0.2
1,918,736	-		IAI47_09075	0.41	-0.7
1,918,736	-		IAI47_09075	0.41	-1.8
1,918,736	-		IAI47_09075	0.41	-1.5
1,918,736	-		IAI47_09075	0.41	+0.1
1,918,736	-		IAI47_09075	0.41	+1.7
1,918,736	-		IAI47_09075	0.41	+0.9
1,918,736	-		IAI47_09075	0.41	-0.7
1,918,736	-		IAI47_09075	0.41	-1.9
1,918,736	-		IAI47_09075	0.41	-0.2
1,918,736	-		IAI47_09075	0.41	-1.1
1,918,736	-		IAI47_09075	0.41	-0.7
1,918,736	-		IAI47_09075	0.41	+1.1
1,918,736	-		IAI47_09075	0.41	+3.1
1,918,736	-		IAI47_09075	0.41	+1.7
1,918,736	-		IAI47_09075	0.41	-0.7
1,918,736	-		IAI47_09075	0.41	-1.7
1,918,736	-		IAI47_09075	0.41	-1.1
1,918,736	-		IAI47_09075	0.41	+1.7
1,918,736	-		IAI47_09075	0.41	+0.4
1,918,736	-		IAI47_09075	0.41	-2.1
1,918,736	-		IAI47_09075	0.41	-2.6
1,918,737	+		IAI47_09075	0.41	+0.3
1,918,737	+		IAI47_09075	0.41	+1.4
1,918,737	+		IAI47_09075	0.41	-1.4
1,918,738	-		IAI47_09075	0.41	+2.7
1,918,738	-		IAI47_09075	0.41	-1.7
1,918,738	-		IAI47_09075	0.41	-1.5
1,918,738	-		IAI47_09075	0.41	-0.1
1,918,738	-		IAI47_09075	0.41	-0.8
1,918,877	+		IAI47_09075	0.56	-0.2
1,918,877	+		IAI47_09075	0.56	+0.8
1,918,877	+		IAI47_09075	0.56	+1.5
1,918,877	+		IAI47_09075	0.56	-0.5
1,918,877	+		IAI47_09075	0.56	-1.1
1,918,878	-		IAI47_09075	0.56	+2.8
1,918,878	-		IAI47_09075	0.56	+0.3
1,918,878	-		IAI47_09075	0.56	+0.5
1,918,913	+		IAI47_09075	0.60	+0.1
1,918,913	+		IAI47_09075	0.60	-2.1
1,918,913	+		IAI47_09075	0.60	-1.1
1,918,913	+		IAI47_09075	0.60	+2.5
1,918,913	+		IAI47_09075	0.60	-1.2
1,918,914	-		IAI47_09075	0.60	+2.8
1,918,914	-		IAI47_09075	0.60	+0.2
1,918,914	-		IAI47_09075	0.60	+2.2
1,918,915	+		IAI47_09075	0.60	+1.7
1,918,915	+		IAI47_09075	0.60	+2.8
1,918,925	-		IAI47_09075	0.61	-0.2
1,919,063	+		IAI47_09075	0.76	+1.8
1,919,063	+		IAI47_09075	0.76	+0.1
1,919,063	+		IAI47_09075	0.76	+0.9
1,919,063	+		IAI47_09075	0.76	-2.0
1,919,063	+		IAI47_09075	0.76	-0.5
1,919,063	+		IAI47_09075	0.76	-0.7
1,919,063	+		IAI47_09075	0.76	-1.5
1,919,120	+		IAI47_09075	0.82	-1.7
1,919,120	+		IAI47_09075	0.82	+3.3
1,919,120	+		IAI47_09075	0.82	+1.1
1,919,121	-		IAI47_09075	0.83	-2.4
1,919,121	-		IAI47_09075	0.83	+1.3
1,919,121	-		IAI47_09075	0.83	-0.0
1,919,121	-		IAI47_09075	0.83	-0.9
1,919,174	+		IAI47_09075	0.88	-2.4
1,919,174	+		IAI47_09075	0.88	-2.2
1,919,174	+		IAI47_09075	0.88	+1.4
1,919,175	-		IAI47_09075	0.88	-1.2
1,919,175	-		IAI47_09075	0.88	-2.2
1,919,175	-		IAI47_09075	0.88	+0.5
1,919,249	+				+3.5
1,919,250	-				+2.4
1,919,250	-				-0.7
1,919,303	+				+3.6
1,919,303	+				+1.8
1,919,303	+				+0.3
1,919,303	+				+1.1
1,919,303	+				+0.1
1,919,303	+				-1.2
1,919,304	-				+1.6
1,919,304	-				+0.8
1,919,304	-				+2.1
1,919,304	-				-1.1
1,919,304	-				+1.1
1,919,304	-				+0.8
1,919,304	-				+1.3
1,919,304	-				+1.7
1,919,354	+				-0.9
1,919,354	+				-0.7
1,919,354	+				+1.1
1,919,354	+				+0.9
1,919,355	-				-0.7
1,919,395	-		IAI47_09080	0.11	-1.5
1,919,415	-		IAI47_09080	0.13	-1.2
1,919,415	-		IAI47_09080	0.13	+2.4
1,919,435	+		IAI47_09080	0.15	+2.5
1,919,435	+		IAI47_09080	0.15	-1.2
1,919,435	+		IAI47_09080	0.15	+2.3
1,919,436	-		IAI47_09080	0.15	-0.9
1,919,436	-		IAI47_09080	0.15	-1.1
1,919,436	-		IAI47_09080	0.15	+4.1
1,919,436	-		IAI47_09080	0.15	+4.1
1,919,436	-		IAI47_09080	0.15	+2.1
1,919,439	-		IAI47_09080	0.16	-1.6
1,919,439	-		IAI47_09080	0.16	+0.5
1,919,439	-		IAI47_09080	0.16	+0.5
1,919,439	-		IAI47_09080	0.16	+0.8
1,919,439	-		IAI47_09080	0.16	-2.1
1,919,485	+		IAI47_09080	0.21	-0.5
1,919,573	+		IAI47_09080	0.30	-2.8
1,919,574	-		IAI47_09080	0.31	+2.1
1,919,574	-		IAI47_09080	0.31	+0.1
1,919,601	+		IAI47_09080	0.34	+3.5
1,919,601	+		IAI47_09080	0.34	+2.1
1,919,601	+		IAI47_09080	0.34	-2.0
1,919,602	-		IAI47_09080	0.34	-1.6
1,919,602	-		IAI47_09080	0.34	-2.1
1,919,602	-		IAI47_09080	0.34	+1.2
1,919,602	-		IAI47_09080	0.34	+1.1
1,919,602	-		IAI47_09080	0.34	+1.2
1,919,622	-		IAI47_09080	0.36	+2.5
1,919,660	-		IAI47_09080	0.40	-1.4
1,919,660	-		IAI47_09080	0.40	+1.2
1,919,660	-		IAI47_09080	0.40	+2.5
1,919,678	-		IAI47_09080	0.42	+2.4
1,919,712	+		IAI47_09080	0.46	-1.6
1,919,742	+		IAI47_09080	0.49	-0.9
1,919,742	+		IAI47_09080	0.49	-2.0
1,919,742	+		IAI47_09080	0.49	+1.2
1,919,742	+		IAI47_09080	0.49	-1.1
1,919,743	-		IAI47_09080	0.49	-0.9
1,919,743	-		IAI47_09080	0.49	+2.3
1,919,781	+		IAI47_09080	0.53	+1.5
1,919,782	-		IAI47_09080	0.53	-0.4
1,919,785	-		IAI47_09080	0.54	-0.2
1,919,785	-		IAI47_09080	0.54	-0.9
1,919,785	-		IAI47_09080	0.54	-1.4
1,919,838	+		IAI47_09080	0.60	+0.6
1,919,839	-		IAI47_09080	0.60	+1.3
1,919,907	-		IAI47_09080	0.67	-1.4
1,919,907	-		IAI47_09080	0.67	+1.1
1,919,927	+		IAI47_09080	0.69	-1.7
1,919,927	+		IAI47_09080	0.69	-0.7
1,919,928	-		IAI47_09080	0.70	+2.3
1,919,948	+		IAI47_09080	0.72	-0.5
1,919,948	+		IAI47_09080	0.72	-2.2
1,919,948	+		IAI47_09080	0.72	+0.1
1,919,949	-		IAI47_09080	0.72	-1.8
1,919,949	-		IAI47_09080	0.72	+2.7
1,919,968	+		IAI47_09080	0.74	-1.4
1,919,969	-		IAI47_09080	0.74	-1.9
1,920,051	+		IAI47_09080	0.83	-1.5
1,920,159	+				+2.7
1,920,159	+				+1.2
1,920,160	-				-0.7
1,920,221	+				+0.9
1,920,221	+				+3.1
1,920,221	+				-0.7
1,920,221	+				-1.1
1,920,222	-				+0.9
1,920,222	-				-0.9
1,920,222	-				+1.8
1,920,272	-				-1.8
1,920,272	-				+0.4
1,920,275	+				+1.6
1,920,275	+				+0.8
1,920,275	+				-2.0
1,920,275	+				-1.7
1,920,275	+				-2.4
1,920,276	-				+1.4
1,920,276	-				+2.3
1,920,276	-				+1.7