Strain Fitness in Pantoea sp. MT58 around IAI47_06955

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,463,536	-				+0.2
1,463,540	+				+1.9
1,463,540	+				-0.2
1,463,575	+				-0.8
1,463,594	+				-1.8
1,463,652	+		IAI47_06950	0.12	+1.5
1,463,652	+		IAI47_06950	0.12	-1.7
1,463,653	-		IAI47_06950	0.12	+0.5
1,463,653	-		IAI47_06950	0.12	-1.6
1,463,653	-		IAI47_06950	0.12	-2.2
1,463,707	+		IAI47_06950	0.20	+0.6
1,463,728	-		IAI47_06950	0.23	-1.0
1,463,728	-		IAI47_06950	0.23	+0.8
1,463,754	+		IAI47_06950	0.27	+0.2
1,463,754	+		IAI47_06950	0.27	-1.4
1,463,767	+		IAI47_06950	0.29	-0.5
1,463,767	+		IAI47_06950	0.29	+1.3
1,463,767	+		IAI47_06950	0.29	+0.6
1,463,767	+		IAI47_06950	0.29	-2.1
1,463,767	+		IAI47_06950	0.29	+3.5
1,463,767	+		IAI47_06950	0.29	-2.9
1,463,767	+		IAI47_06950	0.29	-1.7
1,463,767	+		IAI47_06950	0.29	+2.2
1,463,767	+		IAI47_06950	0.29	-1.6
1,463,767	+		IAI47_06950	0.29	-0.3
1,463,767	+		IAI47_06950	0.29	-1.3
1,463,767	+		IAI47_06950	0.29	+3.0
1,463,767	+		IAI47_06950	0.29	+0.8
1,463,767	+		IAI47_06950	0.29	-0.6
1,463,767	+		IAI47_06950	0.29	-1.6
1,463,768	-		IAI47_06950	0.29	-0.8
1,463,768	-		IAI47_06950	0.29	-2.3
1,463,768	-		IAI47_06950	0.29	-1.0
1,463,817	-		IAI47_06950	0.36	+0.6
1,463,817	-		IAI47_06950	0.36	+0.7
1,463,843	+		IAI47_06950	0.39	-1.9
1,463,843	+		IAI47_06950	0.39	-1.7
1,463,844	-		IAI47_06950	0.40	-1.3
1,463,876	+		IAI47_06950	0.44	+2.2
1,463,876	+		IAI47_06950	0.44	+1.9
1,463,877	-		IAI47_06950	0.44	-1.3
1,463,880	+		IAI47_06950	0.45	-1.3
1,463,880	+		IAI47_06950	0.45	+1.3
1,463,881	-		IAI47_06950	0.45	-0.2
1,463,881	-		IAI47_06950	0.45	+0.9
1,463,912	+		IAI47_06950	0.49	+0.2
1,463,951	+		IAI47_06950	0.55	-2.1
1,464,007	+		IAI47_06950	0.63	+2.0
1,464,007	+		IAI47_06950	0.63	+1.2
1,464,007	+		IAI47_06950	0.63	+4.3
1,464,008	-		IAI47_06950	0.63	+0.2
1,464,008	-		IAI47_06950	0.63	-1.7
1,464,008	-		IAI47_06950	0.63	+1.6
1,464,063	+		IAI47_06950	0.71	-0.2
1,464,063	+		IAI47_06950	0.71	+0.8
1,464,064	-		IAI47_06950	0.71	-0.3
1,464,064	-		IAI47_06950	0.71	-1.2
1,464,064	-		IAI47_06950	0.71	-0.8
1,464,064	-		IAI47_06950	0.71	-1.3
1,464,070	-		IAI47_06950	0.72	-1.0
1,464,103	+		IAI47_06950	0.76	+1.9
1,464,103	+		IAI47_06950	0.76	-2.2
1,464,103	+		IAI47_06950	0.76	-0.4
1,464,103	+		IAI47_06950	0.76	+2.9
1,464,104	-		IAI47_06950	0.76	+4.3
1,464,120	+		IAI47_06950	0.79	+1.6
1,464,120	+		IAI47_06950	0.79	-0.0
1,464,121	-		IAI47_06950	0.79	-1.9
1,464,121	-		IAI47_06950	0.79	+0.6
1,464,121	-		IAI47_06950	0.79	+3.6
1,464,131	+		IAI47_06950	0.80	-1.7
1,464,132	-		IAI47_06950	0.80	-0.6
1,464,132	-		IAI47_06950	0.80	-0.8
1,464,132	-		IAI47_06950	0.80	-1.3
1,464,173	+		IAI47_06950	0.86	+2.0
1,464,173	+		IAI47_06950	0.86	+0.5
1,464,173	+		IAI47_06950	0.86	-0.6
1,464,173	+		IAI47_06950	0.86	+0.6
1,464,173	+		IAI47_06950	0.86	+1.8
1,464,173	+		IAI47_06950	0.86	+1.0
1,464,196	-		IAI47_06950	0.90	-1.2
1,464,203	+				-0.8
1,464,229	+				+2.7
1,464,230	-				+0.4
1,464,254	+				+1.2
1,464,268	-				-0.2
1,464,278	+				-0.2
1,464,280	+				+1.2
1,464,303	-				+0.6
1,464,306	+				+1.8
1,464,306	+				-1.9
1,464,306	+				-0.2
1,464,306	+				-0.0
1,464,306	+				-0.6
1,464,306	+				-0.2
1,464,306	+				+0.5
1,464,306	+				-0.2
1,464,306	+				-0.2
1,464,306	+				+1.3
1,464,306	+				-1.6
1,464,306	+				-1.3
1,464,306	+				+0.8
1,464,306	+				-0.3
1,464,307	-				-2.4
1,464,307	-				+0.5
1,464,307	-				+0.1
1,464,307	-				-2.7
1,464,307	-				+1.7
1,464,307	-				+0.6
1,464,310	+				-0.6
1,464,310	+				-1.6
1,464,310	+				-2.4
1,464,311	-				-0.6
1,464,311	-				-1.0
1,464,313	+				+3.0
1,464,313	+				-0.6
1,464,313	+				-1.9
1,464,313	+				+0.3
1,464,313	+				-1.0
1,464,313	+				-0.8
1,464,313	+				+2.9
1,464,314	-				-1.4
1,464,331	+				-0.2
1,464,331	+				-0.4
1,464,331	+				+1.7
1,464,331	+				+1.9
1,464,331	+				+4.0
1,464,331	+				+0.9
1,464,332	-				+0.4
1,464,332	-				-2.4
1,464,332	-				-0.4
1,464,334	+				+1.6
1,464,334	+				+1.2
1,464,334	+				+3.8
1,464,335	-				-1.0
1,464,337	+				-1.2
1,464,337	+				+1.5
1,464,337	+				-1.9
1,464,337	+				+1.8
1,464,338	-				-1.0
1,464,338	-				-2.0
1,464,338	-				-1.0
1,464,338	-				+0.7
1,464,338	-				-1.3
1,464,338	-				-0.8
1,464,349	+				-1.0
1,464,349	+				-0.8
1,464,349	+				+0.4
1,464,349	+				+0.6
1,464,350	-				+2.6
1,464,350	-				+0.6
1,464,352	+				-1.9
1,464,353	-				+3.7
1,464,353	-				-1.3
1,464,381	+				-1.5
1,464,382	-				+0.2
1,464,382	-				-0.2
1,464,395	+				+0.9
1,464,398	+				-1.2
1,464,404	+				+2.0
1,464,404	+				-1.5
1,464,405	-				+1.8
1,464,405	-				-0.8
1,464,405	-				+2.5
1,464,405	-				-2.2
1,464,462	+		IAI47_06955	0.13	-0.2
1,464,462	+		IAI47_06955	0.13	+0.4
1,464,462	+		IAI47_06955	0.13	+4.1
1,464,462	+		IAI47_06955	0.13	-3.1
1,464,462	+		IAI47_06955	0.13	-1.0
1,464,462	+		IAI47_06955	0.13	-1.3
1,464,462	+		IAI47_06955	0.13	+1.6
1,464,462	+		IAI47_06955	0.13	-1.8
1,464,463	-		IAI47_06955	0.14	-2.4
1,464,463	-		IAI47_06955	0.14	-1.4
1,464,463	-		IAI47_06955	0.14	+2.5
1,464,468	+		IAI47_06955	0.14	-0.5
1,464,469	-		IAI47_06955	0.14	-2.2
1,464,469	-		IAI47_06955	0.14	-0.6
1,464,504	+		IAI47_06955	0.17	+2.8
1,464,504	+		IAI47_06955	0.17	-1.9
1,464,504	+		IAI47_06955	0.17	-2.2
1,464,595	-		IAI47_06955	0.25	-1.0
1,464,706	+		IAI47_06955	0.34	-1.4
1,464,707	-		IAI47_06955	0.34	-1.2
1,464,792	+		IAI47_06955	0.41	+2.8
1,464,792	+		IAI47_06955	0.41	+2.6
1,464,792	+		IAI47_06955	0.41	-1.3
1,464,792	+		IAI47_06955	0.41	-1.1
1,464,792	+		IAI47_06955	0.41	-1.7
1,464,792	+		IAI47_06955	0.41	+0.7
1,464,792	+		IAI47_06955	0.41	+2.0
1,464,792	+		IAI47_06955	0.41	+1.7
1,464,793	-		IAI47_06955	0.42	+6.0
1,464,793	-		IAI47_06955	0.42	-0.2
1,464,793	-		IAI47_06955	0.42	-0.4
1,464,793	-		IAI47_06955	0.42	+1.3
1,464,793	-		IAI47_06955	0.42	+1.0
1,464,867	+		IAI47_06955	0.48	-2.1
1,464,867	+		IAI47_06955	0.48	+0.2
1,464,867	+		IAI47_06955	0.48	-1.0
1,464,867	+		IAI47_06955	0.48	+2.2
1,464,867	+		IAI47_06955	0.48	+3.7
1,464,868	-		IAI47_06955	0.48	-0.8
1,464,996	+		IAI47_06955	0.59	-0.8
1,464,996	+		IAI47_06955	0.59	-3.2
1,464,997	-		IAI47_06955	0.59	-0.6
1,464,997	-		IAI47_06955	0.59	+0.6
1,464,998	+		IAI47_06955	0.59	-2.8
1,464,998	+		IAI47_06955	0.59	+1.0
1,464,999	-		IAI47_06955	0.59	-1.0
1,464,999	-		IAI47_06955	0.59	+1.2
1,464,999	-		IAI47_06955	0.59	-1.0
1,465,064	+		IAI47_06955	0.65	-2.0
1,465,065	-		IAI47_06955	0.65	-1.3
1,465,073	-		IAI47_06955	0.65	-1.5
1,465,073	-		IAI47_06955	0.65	+2.2
1,465,073	-		IAI47_06955	0.65	+3.2
1,465,076	+		IAI47_06955	0.66	-1.2
1,465,076	+		IAI47_06955	0.66	+2.9
1,465,076	+		IAI47_06955	0.66	-0.1
1,465,076	+		IAI47_06955	0.66	-0.1
1,465,077	-		IAI47_06955	0.66	-0.4
1,465,106	+		IAI47_06955	0.68	+0.6
1,465,106	+		IAI47_06955	0.68	+2.2
1,465,106	+		IAI47_06955	0.68	-1.6
1,465,106	+		IAI47_06955	0.68	-1.0
1,465,107	-		IAI47_06955	0.68	+1.1
1,465,133	+		IAI47_06955	0.70	-1.3
1,465,142	+		IAI47_06955	0.71	-0.6
1,465,143	-		IAI47_06955	0.71	+1.4
1,465,143	-		IAI47_06955	0.71	+2.7
1,465,143	-		IAI47_06955	0.71	+1.2
1,465,143	-		IAI47_06955	0.71	-1.7
1,465,149	+		IAI47_06955	0.72	-0.8
1,465,149	+		IAI47_06955	0.72	+1.3
1,465,149	+		IAI47_06955	0.72	-0.4
1,465,149	+		IAI47_06955	0.72	+1.2
1,465,149	+		IAI47_06955	0.72	+3.9
1,465,152	+		IAI47_06955	0.72	+0.7
1,465,264	-		IAI47_06955	0.82	+1.4
1,465,264	-		IAI47_06955	0.82	-0.6
1,465,272	+		IAI47_06955	0.82	-1.0
1,465,272	+		IAI47_06955	0.82	-1.2
1,465,272	+		IAI47_06955	0.82	-0.8
1,465,272	+		IAI47_06955	0.82	-1.0
1,465,273	-		IAI47_06955	0.82	-1.3
1,465,296	+		IAI47_06955	0.84	-1.2
1,465,297	-		IAI47_06955	0.84	-1.3
1,465,347	+		IAI47_06955	0.89	-1.2
1,465,347	+		IAI47_06955	0.89	-0.4
1,465,348	-		IAI47_06955	0.89	+2.0
1,465,349	+		IAI47_06955	0.89	-1.0
1,465,349	+		IAI47_06955	0.89	-1.3
1,465,349	+		IAI47_06955	0.89	+0.7
1,465,350	-		IAI47_06955	0.89	+1.9
1,465,386	+				-0.2
1,465,386	+				-1.3
1,465,386	+				+2.5
1,465,387	-				-0.8
1,465,387	-				+3.9
1,465,387	-				-3.0
1,465,404	+				-1.9
1,465,404	+				-1.3
1,465,404	+				+0.6
1,465,404	+				+0.9
1,465,404	+				+2.2
1,465,404	+				-0.6
1,465,404	+				-1.3
1,465,405	-				-2.0
1,465,405	-				-1.2
1,465,405	-				-0.4
1,465,405	-				+4.0
1,465,405	-				+0.2
1,465,405	-				-1.5
1,465,405	-				-2.2
1,465,405	-				-2.0
1,465,411	-				+0.6
1,465,411	-				-0.8
1,465,427	+				+4.5
1,465,427	+				+0.6
1,465,427	+				+0.8
1,465,428	-				+1.4
1,465,428	-				-0.5
1,465,428	-				+3.5
1,465,480	-				+1.2
1,465,515	+				-1.3
1,465,517	+				+2.5