Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04475 and IAI47_04480 are separated by 139 nucleotides IAI47_04480 and IAI47_04485 are separated by 82 nucleotides IAI47_04485 and IAI47_04490 are separated by 159 nucleotides
IAI47_04475: IAI47_04475 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 940,444 to 943,119
_04475
IAI47_04480: IAI47_04480 - DTW domain-containing protein, at 943,259 to 943,936
_04480
IAI47_04485: IAI47_04485 - thioredoxin TrxC, at 944,019 to 944,438
_04485
IAI47_04490: IAI47_04490 - tRNA/rRNA methyltransferase, at 944,598 to 945,782
_04490
Position (kb) 944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.034 kb on + strand at 943.034 kb on + strand at 943.083 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.091 kb on - strand at 943.154 kb on - strand at 943.261 kb on - strand at 943.296 kb on + strand at 943.297 kb on - strand at 943.328 kb on + strand, within IAI47_04480 at 943.328 kb on + strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.390 kb on + strand, within IAI47_04480 at 943.390 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand at 943.426 kb on + strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.428 kb on + strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.534 kb on + strand, within IAI47_04480 at 943.534 kb on + strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.596 kb on + strand, within IAI47_04480 at 943.626 kb on + strand, within IAI47_04480 at 943.627 kb on - strand, within IAI47_04480 at 943.708 kb on + strand, within IAI47_04480 at 943.708 kb on + strand, within IAI47_04480 at 943.927 kb on + strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.967 kb on + strand at 943.968 kb on - strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.018 kb on - strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.045 kb on + strand at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.073 kb on - strand, within IAI47_04485 at 944.100 kb on - strand, within IAI47_04485 at 944.114 kb on + strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.121 kb on - strand, within IAI47_04485 at 944.169 kb on + strand, within IAI47_04485 at 944.170 kb on - strand, within IAI47_04485 at 944.170 kb on - strand, within IAI47_04485 at 944.175 kb on - strand, within IAI47_04485 at 944.175 kb on - strand, within IAI47_04485 at 944.177 kb on + strand, within IAI47_04485 at 944.177 kb on + strand, within IAI47_04485 at 944.216 kb on + strand, within IAI47_04485 at 944.217 kb on - strand, within IAI47_04485 at 944.217 kb on - strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.309 kb on + strand, within IAI47_04485 at 944.427 kb on + strand at 944.428 kb on - strand at 944.432 kb on + strand at 944.432 kb on + strand at 944.433 kb on - strand at 944.438 kb on + strand at 944.439 kb on - strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.456 kb on - strand at 944.472 kb on + strand at 944.473 kb on - strand at 944.473 kb on - strand at 944.473 kb on - strand at 944.486 kb on + strand at 944.486 kb on + strand at 944.486 kb on + strand at 944.487 kb on - strand at 944.525 kb on + strand at 944.525 kb on + strand at 944.526 kb on - strand at 944.526 kb on - strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.536 kb on + strand at 944.536 kb on + strand at 944.536 kb on + strand at 944.537 kb on - strand at 944.537 kb on - strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.566 kb on + strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.597 kb on + strand at 944.598 kb on - strand at 944.598 kb on - strand at 944.612 kb on + strand at 944.613 kb on - strand at 944.613 kb on - strand at 944.613 kb on - strand at 944.633 kb on + strand at 944.633 kb on + strand at 944.633 kb on + strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.663 kb on + strand at 944.663 kb on + strand at 944.663 kb on + strand at 944.664 kb on - strand at 944.690 kb on + strand at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.730 kb on - strand, within IAI47_04490 at 944.730 kb on - strand, within IAI47_04490 at 944.947 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.994 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.207 kb on + strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.218 kb on - strand, within IAI47_04490 at 945.290 kb on + strand, within IAI47_04490 at 945.290 kb on + strand, within IAI47_04490 at 945.291 kb on - strand, within IAI47_04490 at 945.291 kb on - strand, within IAI47_04490 at 945.344 kb on - strand, within IAI47_04490 at 945.365 kb on + strand, within IAI47_04490 at 945.374 kb on + strand, within IAI47_04490 at 945.374 kb on + strand, within IAI47_04490 at 945.390 kb on - strand, within IAI47_04490 at 945.390 kb on - strand, within IAI47_04490 at 945.416 kb on - strand, within IAI47_04490 at 945.430 kb on + strand, within IAI47_04490 at 945.430 kb on + strand, within IAI47_04490 at 945.431 kb on - strand, within IAI47_04490 at 945.431 kb on - strand, within IAI47_04490
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 943,029 + -2.6 943,029 + -0.9 943,029 + -3.0 943,029 + -1.2 943,029 + +3.1 943,029 + -0.3 943,029 + +2.0 943,030 - +1.3 943,030 - +1.7 943,030 - +1.5 943,034 + +0.7 943,034 + +2.0 943,083 + -0.9 943,090 + -0.9 943,090 + +0.4 943,090 + +0.7 943,090 + +2.9 943,091 - -1.2 943,154 - -0.0 943,261 - -1.3 943,296 + -3.4 943,297 - -0.7 943,328 + IAI47_04480 0.10 +0.2 943,328 + IAI47_04480 0.10 -0.7 943,329 - IAI47_04480 0.10 +0.7 943,329 - IAI47_04480 0.10 -1.9 943,329 - IAI47_04480 0.10 +2.7 943,329 - IAI47_04480 0.10 -0.5 943,329 - IAI47_04480 0.10 +0.6 943,329 - IAI47_04480 0.10 -1.2 943,390 + IAI47_04480 0.19 -0.7 943,390 + IAI47_04480 0.19 -1.7 943,426 + IAI47_04480 0.25 +0.8 943,426 + IAI47_04480 0.25 -1.7 943,426 + IAI47_04480 0.25 -0.9 943,426 + IAI47_04480 0.25 -1.6 943,426 + IAI47_04480 0.25 -1.3 943,426 + +2.3 943,426 + IAI47_04480 0.25 -2.4 943,427 - IAI47_04480 0.25 +2.2 943,427 - IAI47_04480 0.25 -1.4 943,427 - IAI47_04480 0.25 +0.9 943,427 - IAI47_04480 0.25 +2.5 943,427 - IAI47_04480 0.25 -1.0 943,427 - IAI47_04480 0.25 -2.0 943,427 - IAI47_04480 0.25 +1.2 943,427 - IAI47_04480 0.25 +1.6 943,427 - IAI47_04480 0.25 +1.6 943,427 - IAI47_04480 0.25 +2.4 943,427 - IAI47_04480 0.25 -2.3 943,427 - IAI47_04480 0.25 +1.8 943,427 - IAI47_04480 0.25 +2.4 943,428 + IAI47_04480 0.25 +2.8 943,429 - IAI47_04480 0.25 -1.0 943,429 - IAI47_04480 0.25 +0.5 943,429 - IAI47_04480 0.25 +3.0 943,534 + IAI47_04480 0.41 -2.2 943,534 + IAI47_04480 0.41 -2.0 943,535 - IAI47_04480 0.41 +1.2 943,535 - IAI47_04480 0.41 -0.2 943,535 - IAI47_04480 0.41 -1.0 943,596 + IAI47_04480 0.50 -1.0 943,626 + IAI47_04480 0.54 +1.0 943,627 - IAI47_04480 0.54 -1.9 943,708 + IAI47_04480 0.66 +2.0 943,708 + IAI47_04480 0.66 -0.7 943,927 + -0.5 943,928 - -2.1 943,928 - +2.3 943,928 - +0.5 943,928 - +1.3 943,928 - +1.7 943,967 + +1.4 943,968 - +3.2 944,014 + -1.3 944,014 + -1.2 944,014 + +0.6 944,014 + +2.5 944,014 + -0.7 944,014 + -1.3 944,015 - +0.6 944,015 - +1.9 944,015 - -0.4 944,015 - -1.7 944,015 - -0.0 944,017 + -3.2 944,017 + -2.0 944,017 + +1.5 944,017 + +1.3 944,017 + +3.3 944,018 - -2.4 944,020 + +1.7 944,020 + +1.8 944,020 + -0.1 944,021 - +2.9 944,021 - -1.0 944,021 - +0.0 944,021 - -0.9 944,045 + +0.5 944,072 + IAI47_04485 0.13 -1.9 944,072 + IAI47_04485 0.13 -0.3 944,072 + IAI47_04485 0.13 -2.0 944,072 + IAI47_04485 0.13 -2.6 944,072 + IAI47_04485 0.13 -0.3 944,072 + IAI47_04485 0.13 -2.0 944,072 + IAI47_04485 0.13 -0.3 944,073 - IAI47_04485 0.13 -2.0 944,100 - IAI47_04485 0.19 -2.8 944,114 + IAI47_04485 0.23 +3.6 944,115 - IAI47_04485 0.23 +0.8 944,115 - IAI47_04485 0.23 +2.0 944,115 - IAI47_04485 0.23 -1.0 944,115 - IAI47_04485 0.23 -0.7 944,115 - IAI47_04485 0.23 -2.6 944,121 - IAI47_04485 0.24 +0.0 944,169 + IAI47_04485 0.36 +0.6 944,170 - IAI47_04485 0.36 -1.4 944,170 - IAI47_04485 0.36 -0.2 944,175 - IAI47_04485 0.37 +3.3 944,175 - IAI47_04485 0.37 +0.5 944,177 + IAI47_04485 0.38 -1.5 944,177 + IAI47_04485 0.38 +0.1 944,216 + IAI47_04485 0.47 -1.8 944,217 - IAI47_04485 0.47 +3.1 944,217 - IAI47_04485 0.47 +0.3 944,296 + IAI47_04485 0.66 -1.7 944,296 + IAI47_04485 0.66 -0.2 944,296 + IAI47_04485 0.66 -2.0 944,296 + IAI47_04485 0.66 -1.3 944,297 - IAI47_04485 0.66 +0.2 944,297 - IAI47_04485 0.66 +2.4 944,297 - IAI47_04485 0.66 +0.9 944,297 - IAI47_04485 0.66 -1.8 944,297 - IAI47_04485 0.66 -0.7 944,297 - IAI47_04485 0.66 -2.2 944,309 + IAI47_04485 0.69 -1.6 944,427 + +2.6 944,428 - +2.8 944,432 + -0.4 944,432 + +3.5 944,433 - +0.7 944,438 + -1.5 944,439 - -1.3 944,455 + +3.2 944,455 + -2.2 944,455 + -3.0 944,455 + +2.3 944,456 - +0.5 944,472 + +3.6 944,473 - -2.6 944,473 - +0.8 944,473 - +2.6 944,486 + +3.2 944,486 + +1.6 944,486 + -0.9 944,487 - +1.9 944,525 + +1.3 944,525 + +0.9 944,526 - -0.2 944,526 - -3.2 944,527 + -3.0 944,527 + -0.8 944,527 + +0.1 944,527 + +0.5 944,527 + -0.3 944,527 + -0.7 944,527 + +1.3 944,527 + -1.5 944,527 + +1.2 944,527 + +1.7 944,528 - -2.0 944,528 - +3.8 944,528 - +1.0 944,528 - -1.0 944,528 - -1.7 944,528 - +2.5 944,528 - -1.9 944,536 + +0.0 944,536 + -1.4 944,536 + -2.5 944,537 - +0.3 944,537 - +2.4 944,543 + +1.3 944,543 + -0.2 944,543 + +2.0 944,543 + +1.2 944,543 + +0.8 944,547 + -1.3 944,547 + +1.5 944,547 + +1.7 944,547 + +3.6 944,547 + +3.9 944,547 + +0.9 944,547 + -0.3 944,547 + -1.7 944,547 + -1.2 944,548 - -0.0 944,548 - -1.4 944,548 - +0.6 944,548 - -0.7 944,548 - +2.0 944,548 - -1.6 944,566 + -0.9 944,567 - +4.4 944,567 - +2.7 944,567 - +1.8 944,567 - -0.7 944,567 - +4.7 944,567 - -2.4 944,567 - -1.5 944,597 + -0.1 944,598 - +3.6 944,598 - +1.6 944,612 + -2.0 944,613 - -2.0 944,613 - -1.1 944,613 - +1.3 944,633 + -0.9 944,633 + +2.1 944,633 + +2.9 944,634 - +2.3 944,634 - +2.0 944,634 - -1.8 944,634 - +1.3 944,643 + -0.8 944,643 + -2.2 944,643 + -1.2 944,643 + +2.9 944,643 + -3.1 944,643 + +3.3 944,643 + +2.2 944,643 + -0.6 944,643 + -1.0 944,643 + +2.5 944,643 + -1.6 944,643 + -1.3 944,643 + +0.1 944,643 + -1.5 944,643 + +0.8 944,644 - +3.8 944,644 - +1.7 944,644 - +4.1 944,644 - +1.3 944,644 - +0.9 944,644 - +2.5 944,644 - -1.4 944,644 - -0.1 944,663 + +0.8 944,663 + -1.4 944,663 + +0.6 944,664 - -0.0 944,690 + -0.4 944,729 + IAI47_04490 0.11 +1.6 944,729 + IAI47_04490 0.11 +1.7 944,729 + IAI47_04490 0.11 -0.5 944,729 + IAI47_04490 0.11 +2.4 944,730 - IAI47_04490 0.11 -0.7 944,730 - IAI47_04490 0.11 -0.0 944,947 + IAI47_04490 0.29 +2.1 944,993 + IAI47_04490 0.33 -2.9 944,993 + IAI47_04490 0.33 +2.6 944,993 + IAI47_04490 0.33 -2.5 944,993 + IAI47_04490 0.33 -1.5 944,994 - IAI47_04490 0.33 -0.8 945,079 - IAI47_04490 0.41 -2.0 945,079 - IAI47_04490 0.41 -2.3 945,079 - IAI47_04490 0.41 +0.6 945,079 - IAI47_04490 0.41 +1.4 945,207 + IAI47_04490 0.51 -2.0 945,208 - IAI47_04490 0.51 -0.5 945,208 - IAI47_04490 0.51 +0.3 945,208 - IAI47_04490 0.51 +0.3 945,208 - IAI47_04490 0.51 +3.0 945,208 - IAI47_04490 0.51 +2.3 945,208 - IAI47_04490 0.51 -0.5 945,217 + IAI47_04490 0.52 +1.4 945,217 + IAI47_04490 0.52 -2.4 945,217 + IAI47_04490 0.52 -1.4 945,218 - IAI47_04490 0.52 -1.4 945,290 + IAI47_04490 0.58 +1.9 945,290 + IAI47_04490 0.58 +0.7 945,291 - IAI47_04490 0.58 +1.7 945,291 - IAI47_04490 0.58 +0.2 945,344 - IAI47_04490 0.63 +2.0 945,365 + IAI47_04490 0.65 -1.1 945,374 + IAI47_04490 0.65 +0.3 945,374 + IAI47_04490 0.65 -1.6 945,390 - IAI47_04490 0.67 -2.9 945,390 - IAI47_04490 0.67 -0.5 945,416 - IAI47_04490 0.69 +1.5 945,430 + IAI47_04490 0.70 -2.6 945,430 + IAI47_04490 0.70 +2.5 945,431 - IAI47_04490 0.70 -0.7 945,431 - IAI47_04490 0.70 +0.8
Or see this region's nucleotide sequence