Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04465 and IAI47_04470 are separated by 348 nucleotides IAI47_04470 and IAI47_04475 are separated by 99 nucleotides
IAI47_04465: IAI47_04465 - MFS transporter, at 937,351 to 938,640
_04465
IAI47_04470: IAI47_04470 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 938,989 to 940,344
_04470
IAI47_04475: IAI47_04475 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 940,444 to 943,119
_04475
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.051 kb on + strand, within IAI47_04465 at 938.065 kb on - strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.147 kb on - strand, within IAI47_04465 at 938.155 kb on - strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.235 kb on - strand, within IAI47_04465 at 938.253 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.312 kb on + strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.354 kb on + strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.421 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.564 kb on - strand at 938.631 kb on + strand at 938.632 kb on - strand at 938.632 kb on - strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.769 kb on - strand at 938.769 kb on - strand at 938.772 kb on + strand at 938.773 kb on - strand at 938.773 kb on - strand at 938.793 kb on - strand at 938.793 kb on - strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.915 kb on + strand at 938.916 kb on - strand at 938.963 kb on - strand at 938.975 kb on + strand at 938.975 kb on + strand at 938.976 kb on - strand at 938.976 kb on - strand at 940.412 kb on - strand at 940.456 kb on - strand at 940.456 kb on - strand at 940.503 kb on + strand at 940.504 kb on - strand at 940.536 kb on + strand at 940.537 kb on - strand at 940.537 kb on - strand at 940.537 kb on - strand at 940.554 kb on + strand at 940.554 kb on + strand at 940.555 kb on - strand at 940.585 kb on - strand at 940.620 kb on - strand at 940.620 kb on - strand at 940.708 kb on - strand at 940.708 kb on - strand at 940.723 kb on - strand, within IAI47_04475 at 940.733 kb on - strand, within IAI47_04475 at 940.796 kb on + strand, within IAI47_04475 at 940.799 kb on + strand, within IAI47_04475 at 940.812 kb on + strand, within IAI47_04475 at 940.812 kb on + strand, within IAI47_04475 at 940.813 kb on - strand, within IAI47_04475 at 940.856 kb on + strand, within IAI47_04475 at 940.862 kb on + strand, within IAI47_04475 at 940.863 kb on - strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.966 kb on + strand, within IAI47_04475 at 940.966 kb on + strand, within IAI47_04475 at 940.967 kb on - strand, within IAI47_04475 at 940.967 kb on - strand, within IAI47_04475 at 941.064 kb on + strand, within IAI47_04475 at 941.064 kb on + strand, within IAI47_04475 at 941.097 kb on + strand, within IAI47_04475 at 941.097 kb on + strand, within IAI47_04475 at 941.136 kb on + strand, within IAI47_04475 at 941.137 kb on - strand, within IAI47_04475 at 941.137 kb on - strand, within IAI47_04475 at 941.161 kb on + strand, within IAI47_04475 at 941.161 kb on + strand, within IAI47_04475 at 941.162 kb on - strand, within IAI47_04475 at 941.194 kb on - strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.238 kb on - strand, within IAI47_04475 at 941.238 kb on - strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.254 kb on - strand, within IAI47_04475 at 941.322 kb on + strand, within IAI47_04475 at 941.322 kb on + strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 938,007 + IAI47_04465 0.51 +2.1 938,007 + IAI47_04465 0.51 -1.6 938,007 + IAI47_04465 0.51 +1.2 938,008 - IAI47_04465 0.51 +2.1 938,008 - IAI47_04465 0.51 -0.5 938,051 + IAI47_04465 0.54 -1.6 938,065 - IAI47_04465 0.55 -2.1 938,119 + IAI47_04465 0.60 +3.1 938,119 + IAI47_04465 0.60 -2.4 938,120 - IAI47_04465 0.60 -1.6 938,120 - IAI47_04465 0.60 +0.1 938,134 + IAI47_04465 0.61 +4.1 938,134 + IAI47_04465 0.61 -2.9 938,134 + IAI47_04465 0.61 +2.0 938,135 - IAI47_04465 0.61 +1.1 938,135 - IAI47_04465 0.61 -2.0 938,135 - IAI47_04465 0.61 +1.0 938,135 - IAI47_04465 0.61 -0.7 938,135 - IAI47_04465 0.61 -1.6 938,135 - IAI47_04465 0.61 -1.7 938,146 + IAI47_04465 0.62 +1.0 938,146 + IAI47_04465 0.62 -1.0 938,146 + IAI47_04465 0.62 -1.6 938,147 - IAI47_04465 0.62 -1.3 938,155 - IAI47_04465 0.62 -2.4 938,234 + IAI47_04465 0.68 +1.1 938,234 + IAI47_04465 0.68 +1.9 938,235 - IAI47_04465 0.69 -0.4 938,253 + IAI47_04465 0.70 -1.3 938,303 + IAI47_04465 0.74 +2.3 938,303 + IAI47_04465 0.74 +2.9 938,304 - IAI47_04465 0.74 +1.6 938,304 - IAI47_04465 0.74 -2.1 938,307 + IAI47_04465 0.74 +1.9 938,307 + IAI47_04465 0.74 -0.3 938,307 + IAI47_04465 0.74 -2.4 938,307 + IAI47_04465 0.74 -1.8 938,307 + IAI47_04465 0.74 +0.7 938,307 + IAI47_04465 0.74 +1.3 938,307 + IAI47_04465 0.74 +0.5 938,307 + IAI47_04465 0.74 +0.5 938,307 + IAI47_04465 0.74 +2.9 938,307 + IAI47_04465 0.74 +0.2 938,307 + IAI47_04465 0.74 +1.6 938,307 + IAI47_04465 0.74 -0.5 938,307 + IAI47_04465 0.74 +0.4 938,307 + IAI47_04465 0.74 -2.4 938,307 + IAI47_04465 0.74 +1.1 938,307 + IAI47_04465 0.74 +3.1 938,307 + IAI47_04465 0.74 -1.6 938,307 + IAI47_04465 0.74 -1.4 938,307 + IAI47_04465 0.74 -2.0 938,307 + IAI47_04465 0.74 +0.3 938,308 - IAI47_04465 0.74 -0.2 938,308 - IAI47_04465 0.74 +1.0 938,308 - IAI47_04465 0.74 +2.3 938,308 - IAI47_04465 0.74 +1.6 938,308 - IAI47_04465 0.74 -1.1 938,308 - IAI47_04465 0.74 +1.1 938,308 - IAI47_04465 0.74 +2.1 938,308 - IAI47_04465 0.74 -1.1 938,308 - IAI47_04465 0.74 +1.6 938,308 - IAI47_04465 0.74 -2.3 938,308 - IAI47_04465 0.74 +3.8 938,308 - IAI47_04465 0.74 -2.4 938,308 - IAI47_04465 0.74 +0.7 938,308 - IAI47_04465 0.74 +1.1 938,308 - IAI47_04465 0.74 +2.8 938,308 - IAI47_04465 0.74 +1.7 938,308 - IAI47_04465 0.74 +0.3 938,308 - IAI47_04465 0.74 +3.2 938,308 - IAI47_04465 0.74 -1.0 938,308 - IAI47_04465 0.74 -0.9 938,308 - IAI47_04465 0.74 -0.0 938,308 - IAI47_04465 0.74 -1.6 938,308 - IAI47_04465 0.74 -1.6 938,308 - IAI47_04465 0.74 +1.1 938,312 + IAI47_04465 0.74 +2.4 938,313 - IAI47_04465 0.75 +2.5 938,313 - IAI47_04465 0.75 -0.9 938,313 - IAI47_04465 0.75 -1.3 938,354 + IAI47_04465 0.78 +0.7 938,355 - IAI47_04465 0.78 -2.0 938,355 - IAI47_04465 0.78 +0.0 938,366 + IAI47_04465 0.79 +1.8 938,366 + IAI47_04465 0.79 +1.9 938,367 - IAI47_04465 0.79 -2.5 938,367 - IAI47_04465 0.79 -1.0 938,389 - IAI47_04465 0.80 -0.5 938,389 - IAI47_04465 0.80 -2.1 938,398 + IAI47_04465 0.81 +1.9 938,398 + IAI47_04465 0.81 -2.6 938,398 + IAI47_04465 0.81 +0.3 938,399 - IAI47_04465 0.81 +3.1 938,399 - IAI47_04465 0.81 +3.2 938,421 + IAI47_04465 0.83 -2.2 938,473 + IAI47_04465 0.87 -3.1 938,473 + IAI47_04465 0.87 -0.3 938,473 + IAI47_04465 0.87 +0.3 938,473 + IAI47_04465 0.87 -0.5 938,473 + IAI47_04465 0.87 +2.2 938,473 + IAI47_04465 0.87 +0.7 938,473 + IAI47_04465 0.87 +2.4 938,474 - IAI47_04465 0.87 -2.0 938,474 - IAI47_04465 0.87 -0.8 938,474 - IAI47_04465 0.87 +1.9 938,474 - IAI47_04465 0.87 +0.6 938,474 - IAI47_04465 0.87 -2.8 938,512 + -1.0 938,512 + -0.5 938,512 + +1.2 938,512 + -2.2 938,512 + -2.2 938,512 + -0.7 938,513 - +1.4 938,513 - -1.0 938,513 - +0.9 938,513 - -1.4 938,563 + -2.7 938,563 + -1.9 938,563 + +2.8 938,563 + -0.9 938,564 - +2.8 938,631 + +1.3 938,632 - -0.1 938,632 - -0.9 938,638 + -0.7 938,639 - -0.5 938,639 - -1.4 938,639 - +1.7 938,670 - -0.1 938,670 - +2.5 938,670 - +2.0 938,670 - +1.5 938,670 - +1.4 938,746 + -1.4 938,746 + -1.8 938,746 + +1.0 938,746 + -0.7 938,747 - +1.2 938,747 - +0.6 938,747 - +1.5 938,747 - -2.5 938,768 + -2.2 938,768 + -3.4 938,768 + +1.6 938,768 + -1.6 938,769 - +2.7 938,769 - +1.9 938,772 + +1.0 938,773 - +3.1 938,773 - -1.7 938,793 - -1.5 938,793 - +0.7 938,833 + +1.7 938,833 + +1.6 938,833 + -2.2 938,833 + +1.4 938,833 + +2.5 938,833 + -1.9 938,834 - +1.4 938,834 - +1.4 938,834 - +1.7 938,834 - -0.3 938,837 + +2.1 938,837 + +2.3 938,837 + +0.7 938,837 + -2.8 938,837 + -0.0 938,837 + -0.3 938,838 - +0.7 938,838 - -1.7 938,838 - +0.3 938,915 + -1.3 938,916 - +0.4 938,963 - +2.4 938,975 + +2.9 938,975 + -2.7 938,976 - +1.3 938,976 - +0.9 940,412 - +2.6 940,456 - -1.5 940,456 - -2.8 940,503 + -1.8 940,504 - +1.9 940,536 + -0.3 940,537 - -2.6 940,537 - +2.3 940,537 - +2.2 940,554 + -1.4 940,554 + +1.9 940,555 - -1.2 940,585 - +1.1 940,620 - -0.9 940,620 - -0.7 940,708 - -2.6 940,708 - -2.2 940,723 - IAI47_04475 0.10 +1.5 940,733 - IAI47_04475 0.11 +2.6 940,796 + IAI47_04475 0.13 +1.8 940,799 + IAI47_04475 0.13 +1.0 940,812 + IAI47_04475 0.14 +1.3 940,812 + IAI47_04475 0.14 -2.4 940,813 - IAI47_04475 0.14 -1.2 940,856 + IAI47_04475 0.15 -1.3 940,862 + IAI47_04475 0.16 +1.3 940,863 - IAI47_04475 0.16 +2.6 940,865 + IAI47_04475 0.16 +1.7 940,865 + IAI47_04475 0.16 +3.6 940,865 + IAI47_04475 0.16 -0.4 940,865 + IAI47_04475 0.16 -1.8 940,866 - IAI47_04475 0.16 -0.9 940,866 - IAI47_04475 0.16 +2.6 940,866 - IAI47_04475 0.16 -1.3 940,866 - IAI47_04475 0.16 -1.4 940,866 - IAI47_04475 0.16 -2.2 940,866 - IAI47_04475 0.16 +1.7 940,966 + IAI47_04475 0.20 -1.5 940,966 + IAI47_04475 0.20 -1.6 940,967 - IAI47_04475 0.20 +2.1 940,967 - IAI47_04475 0.20 +1.2 941,064 + IAI47_04475 0.23 -1.4 941,064 + IAI47_04475 0.23 -1.5 941,097 + IAI47_04475 0.24 -0.3 941,097 + IAI47_04475 0.24 -1.7 941,136 + IAI47_04475 0.26 +0.0 941,137 - IAI47_04475 0.26 +1.7 941,137 - IAI47_04475 0.26 -0.3 941,161 + IAI47_04475 0.27 -1.3 941,161 + IAI47_04475 0.27 -0.7 941,162 - IAI47_04475 0.27 -1.8 941,194 - IAI47_04475 0.28 -0.2 941,237 + IAI47_04475 0.30 +3.4 941,237 + IAI47_04475 0.30 +0.3 941,237 + IAI47_04475 0.30 +2.5 941,237 + IAI47_04475 0.30 +2.3 941,237 + IAI47_04475 0.30 +1.9 941,238 - IAI47_04475 0.30 -0.3 941,238 - IAI47_04475 0.30 -0.5 941,253 + IAI47_04475 0.30 -2.0 941,253 + IAI47_04475 0.30 +1.3 941,253 + IAI47_04475 0.30 +1.7 941,254 - IAI47_04475 0.30 +1.9 941,322 + IAI47_04475 0.33 -2.0 941,322 + IAI47_04475 0.33 +3.3 941,323 - IAI47_04475 0.33 -0.3 941,323 - IAI47_04475 0.33 -2.0 941,323 - IAI47_04475 0.33 +1.9 941,323 - IAI47_04475 0.33 -0.3 941,323 - IAI47_04475 0.33 +1.1
Or see this region's nucleotide sequence