Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04240 and IAI47_04245 are separated by 304 nucleotides IAI47_04245 and IAI47_04250 are separated by 295 nucleotides
IAI47_04240: IAI47_04240 - DNA mismatch repair protein MutS, at 889,409 to 891,970
_04240
IAI47_04245: IAI47_04245 - two-component system response regulator NarL, at 892,275 to 892,943
_04245
IAI47_04250: IAI47_04250 - NarK family nitrate/nitrite MFS transporter, at 893,239 to 894,630
_04250
Position (kb) 892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 891.427 kb on - strand, within IAI47_04240 at 891.427 kb on - strand, within IAI47_04240 at 891.531 kb on + strand, within IAI47_04240 at 891.662 kb on + strand, within IAI47_04240 at 891.662 kb on + strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.730 kb on - strand at 891.730 kb on - strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.843 kb on + strand at 891.843 kb on + strand at 891.843 kb on + strand at 891.855 kb on + strand at 891.855 kb on + strand at 891.856 kb on - strand at 891.856 kb on - strand at 891.868 kb on + strand at 891.869 kb on - strand at 891.873 kb on + strand at 891.874 kb on - strand at 891.915 kb on + strand at 891.915 kb on + strand at 891.915 kb on + strand at 891.916 kb on - strand at 891.916 kb on - strand at 891.970 kb on + strand at 891.971 kb on - strand at 891.978 kb on + strand at 891.978 kb on + strand at 891.979 kb on - strand at 891.979 kb on - strand at 891.979 kb on - strand at 891.989 kb on + strand at 891.989 kb on + strand at 891.989 kb on + strand at 891.990 kb on - strand at 892.062 kb on + strand at 892.070 kb on - strand at 892.070 kb on - strand at 892.081 kb on + strand at 892.082 kb on - strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.117 kb on + strand at 892.118 kb on - strand at 892.118 kb on - strand at 892.118 kb on - strand at 892.119 kb on + strand at 892.119 kb on + strand at 892.119 kb on + strand at 892.120 kb on - strand at 892.120 kb on - strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.349 kb on - strand, within IAI47_04245 at 892.370 kb on + strand, within IAI47_04245 at 892.370 kb on + strand, within IAI47_04245 at 892.466 kb on + strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.595 kb on + strand, within IAI47_04245 at 892.595 kb on + strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.609 kb on + strand, within IAI47_04245 at 892.609 kb on + strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.655 kb on + strand, within IAI47_04245 at 892.655 kb on + strand, within IAI47_04245 at 892.656 kb on - strand, within IAI47_04245 at 892.656 kb on - strand, within IAI47_04245 at 892.671 kb on + strand, within IAI47_04245 at 892.671 kb on + strand, within IAI47_04245 at 892.672 kb on - strand, within IAI47_04245 at 892.672 kb on - strand, within IAI47_04245 at 892.718 kb on + strand, within IAI47_04245 at 892.718 kb on + strand, within IAI47_04245 at 892.719 kb on - strand, within IAI47_04245 at 892.742 kb on + strand, within IAI47_04245 at 892.742 kb on + strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.868 kb on + strand, within IAI47_04245 at 892.869 kb on - strand, within IAI47_04245 at 892.869 kb on - strand, within IAI47_04245 at 892.896 kb on + strand at 892.897 kb on - strand at 892.905 kb on - strand at 892.923 kb on + strand at 892.923 kb on + strand at 892.924 kb on - strand at 892.924 kb on - strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.974 kb on - strand at 892.974 kb on - strand at 892.974 kb on - strand at 892.978 kb on + strand at 892.998 kb on + strand at 892.998 kb on + strand at 892.998 kb on + strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.002 kb on + strand at 893.003 kb on - strand at 893.003 kb on - strand at 893.003 kb on - strand at 893.016 kb on + strand at 893.017 kb on - strand at 893.017 kb on - strand at 893.017 kb on - strand at 893.024 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.086 kb on - strand at 893.094 kb on + strand at 893.094 kb on + strand at 893.096 kb on + strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.113 kb on - strand at 893.116 kb on + strand at 893.116 kb on + strand at 893.117 kb on - strand at 893.117 kb on - strand at 893.117 kb on - strand at 893.150 kb on - strand at 893.150 kb on - strand at 893.150 kb on - strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.173 kb on - strand at 893.173 kb on - strand at 893.173 kb on - strand at 893.197 kb on - strand at 893.205 kb on + strand at 893.206 kb on - strand at 893.206 kb on - strand at 893.215 kb on + strand at 893.215 kb on + strand at 893.216 kb on - strand at 893.216 kb on - strand at 893.216 kb on - strand at 893.238 kb on + strand at 893.238 kb on + strand at 893.239 kb on - strand at 893.282 kb on + strand at 893.282 kb on + strand at 893.282 kb on + strand at 893.331 kb on + strand at 893.332 kb on - strand at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.431 kb on - strand, within IAI47_04250 at 893.431 kb on - strand, within IAI47_04250 at 893.442 kb on + strand, within IAI47_04250 at 893.442 kb on + strand, within IAI47_04250 at 893.469 kb on - strand, within IAI47_04250 at 893.469 kb on - strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.526 kb on + strand, within IAI47_04250 at 893.526 kb on + strand, within IAI47_04250 at 893.527 kb on - strand, within IAI47_04250 at 893.527 kb on - strand, within IAI47_04250 at 893.609 kb on + strand, within IAI47_04250 at 893.609 kb on + strand, within IAI47_04250 at 893.610 kb on - strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.641 kb on - strand, within IAI47_04250 at 893.641 kb on - strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.835 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.845 kb on - strand, within IAI47_04250 at 893.845 kb on - strand, within IAI47_04250 at 893.891 kb on + strand, within IAI47_04250
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 891,427 - IAI47_04240 0.79 -1.6 891,427 - IAI47_04240 0.79 -1.2 891,531 + IAI47_04240 0.83 -2.0 891,662 + IAI47_04240 0.88 +1.3 891,662 + IAI47_04240 0.88 -1.4 891,663 - IAI47_04240 0.88 +2.9 891,663 - IAI47_04240 0.88 -0.2 891,663 - IAI47_04240 0.88 +1.9 891,663 - IAI47_04240 0.88 +3.3 891,663 - IAI47_04240 0.88 -2.3 891,678 - IAI47_04240 0.89 +1.9 891,678 - IAI47_04240 0.89 +1.4 891,678 - IAI47_04240 0.89 +0.0 891,678 - IAI47_04240 0.89 -0.9 891,730 - -3.0 891,730 - -0.9 891,747 + -0.5 891,747 + +2.5 891,747 + +1.5 891,747 + -2.9 891,843 + -2.0 891,843 + -0.7 891,843 + -1.8 891,855 + -0.3 891,855 + -0.5 891,856 - -2.2 891,856 - +0.7 891,868 + +0.3 891,869 - -1.8 891,873 + -0.3 891,874 - -0.7 891,915 + +0.5 891,915 + -1.8 891,915 + -1.0 891,916 - +1.8 891,916 - -0.8 891,970 + +1.3 891,971 - -2.8 891,978 + -0.0 891,978 + -2.2 891,979 - -1.4 891,979 - -0.4 891,979 - -1.4 891,989 + -2.2 891,989 + -2.3 891,989 + -0.1 891,990 - +0.2 892,062 + +2.1 892,070 - +2.1 892,070 - +0.5 892,081 + -2.7 892,082 - +2.5 892,094 + +1.2 892,094 + -0.1 892,094 + +2.5 892,094 + -0.5 892,117 + -2.4 892,118 - +2.3 892,118 - +1.7 892,118 - +4.5 892,119 + -2.2 892,119 + +1.6 892,119 + +3.5 892,120 - -0.7 892,120 - -0.0 892,325 + -1.0 892,325 + -2.5 892,325 + -2.0 892,325 + -1.8 892,326 - +2.0 892,326 - +3.5 892,326 - -3.3 892,326 - -0.9 892,326 - -0.3 892,348 + IAI47_04245 0.11 -1.2 892,348 + IAI47_04245 0.11 +2.3 892,348 + IAI47_04245 0.11 +1.5 892,348 + IAI47_04245 0.11 +0.0 892,349 - IAI47_04245 0.11 -0.9 892,370 + IAI47_04245 0.14 +2.1 892,370 + IAI47_04245 0.14 +0.5 892,466 + IAI47_04245 0.29 +1.2 892,467 - IAI47_04245 0.29 -2.4 892,467 - IAI47_04245 0.29 -2.2 892,467 - IAI47_04245 0.29 -2.3 892,595 + IAI47_04245 0.48 -3.0 892,595 + IAI47_04245 0.48 +0.1 892,596 - IAI47_04245 0.48 -0.2 892,596 - IAI47_04245 0.48 -2.0 892,596 - IAI47_04245 0.48 +0.2 892,596 - IAI47_04245 0.48 -0.3 892,609 + IAI47_04245 0.50 -1.0 892,609 + IAI47_04245 0.50 -0.9 892,610 - IAI47_04245 0.50 +3.8 892,610 - IAI47_04245 0.50 +2.1 892,610 - IAI47_04245 0.50 +0.3 892,610 - IAI47_04245 0.50 -0.0 892,655 + IAI47_04245 0.57 -0.5 892,655 + IAI47_04245 0.57 +0.7 892,656 - IAI47_04245 0.57 -0.9 892,656 - IAI47_04245 0.57 +2.3 892,671 + IAI47_04245 0.59 +0.6 892,671 + IAI47_04245 0.59 +1.0 892,672 - IAI47_04245 0.59 -1.5 892,672 - IAI47_04245 0.59 +1.3 892,718 + IAI47_04245 0.66 -3.6 892,718 + IAI47_04245 0.66 -0.5 892,719 - IAI47_04245 0.66 +1.7 892,742 + IAI47_04245 0.70 +0.7 892,742 + IAI47_04245 0.70 -1.7 892,743 - IAI47_04245 0.70 -0.3 892,743 - IAI47_04245 0.70 -2.3 892,743 - IAI47_04245 0.70 -1.9 892,743 - IAI47_04245 0.70 -1.7 892,808 + IAI47_04245 0.80 -2.0 892,808 + IAI47_04245 0.80 -2.7 892,808 + IAI47_04245 0.80 -0.3 892,808 + IAI47_04245 0.80 -0.9 892,808 + IAI47_04245 0.80 -0.9 892,809 - IAI47_04245 0.80 +1.6 892,809 - IAI47_04245 0.80 -1.4 892,809 - IAI47_04245 0.80 +2.1 892,859 + IAI47_04245 0.87 -0.7 892,859 + IAI47_04245 0.87 -1.7 892,859 + IAI47_04245 0.87 -2.0 892,859 + IAI47_04245 0.87 +2.8 892,859 + IAI47_04245 0.87 -1.2 892,860 - IAI47_04245 0.87 -2.0 892,860 - IAI47_04245 0.87 -0.8 892,860 - IAI47_04245 0.87 +1.6 892,860 - IAI47_04245 0.87 +0.8 892,860 - IAI47_04245 0.87 +0.7 892,860 - IAI47_04245 0.87 +0.7 892,868 + IAI47_04245 0.89 +0.6 892,869 - IAI47_04245 0.89 -0.7 892,869 - IAI47_04245 0.89 +1.3 892,896 + +2.3 892,897 - -1.5 892,905 - +0.9 892,923 + -2.0 892,923 + +1.9 892,924 - +1.5 892,924 - -0.0 892,973 + -1.7 892,973 + +1.7 892,973 + +1.8 892,973 + +3.7 892,973 + -2.1 892,973 + +2.9 892,973 + +0.3 892,974 - -0.8 892,974 - +0.2 892,974 - +3.1 892,978 + +2.9 892,998 + +1.8 892,998 + +2.1 892,998 + +0.1 892,999 - -1.5 892,999 - -1.7 892,999 - +5.1 892,999 - +2.4 892,999 - -1.6 892,999 - -0.3 892,999 - -0.9 892,999 - -1.2 893,000 + -2.2 893,000 + -0.4 893,000 + -1.0 893,000 + -1.0 893,000 + -0.9 893,000 + +3.8 893,000 + +0.3 893,000 + +1.0 893,001 - +0.6 893,001 - -0.3 893,001 - -0.5 893,001 - +1.5 893,001 - +1.1 893,001 - +1.1 893,001 - +3.6 893,002 + +2.8 893,003 - +1.8 893,003 - -1.4 893,003 - -1.4 893,016 + +0.6 893,017 - -2.8 893,017 - +2.9 893,017 - -0.0 893,024 + +1.5 893,085 + +5.6 893,085 + +4.9 893,085 + +4.6 893,085 + +4.7 893,086 - -1.7 893,094 + +5.8 893,094 + +2.6 893,096 + +4.9 893,097 - -3.1 893,097 - +2.6 893,097 - -1.6 893,097 - +1.8 893,097 - -1.5 893,108 + +5.1 893,108 + +5.9 893,108 + +6.2 893,109 - -0.9 893,109 - -2.8 893,113 - +1.1 893,116 + +5.9 893,116 + +5.6 893,117 - -0.7 893,117 - +0.4 893,117 - -1.4 893,150 - +0.8 893,150 - -2.7 893,150 - -2.7 893,172 + +5.2 893,172 + +4.5 893,172 + +5.2 893,172 + +5.6 893,173 - -0.1 893,173 - +3.6 893,173 - -1.9 893,197 - +0.2 893,205 + +5.9 893,206 - -0.2 893,206 - +0.7 893,215 + +6.2 893,215 + +2.5 893,216 - -0.4 893,216 - +1.2 893,216 - +0.7 893,238 + +2.1 893,238 + -0.8 893,239 - +2.0 893,282 + -2.2 893,282 + +1.7 893,282 + +1.2 893,331 + -0.2 893,332 - +2.5 893,430 + IAI47_04250 0.14 -0.7 893,430 + IAI47_04250 0.14 -1.0 893,430 + IAI47_04250 0.14 +0.7 893,430 + IAI47_04250 0.14 -1.9 893,431 - IAI47_04250 0.14 +1.2 893,431 - IAI47_04250 0.14 +0.2 893,442 + IAI47_04250 0.15 -2.2 893,442 + IAI47_04250 0.15 -2.0 893,469 - IAI47_04250 0.17 +1.7 893,469 - IAI47_04250 0.17 -1.4 893,515 + IAI47_04250 0.20 +1.8 893,515 + IAI47_04250 0.20 -1.3 893,515 + IAI47_04250 0.20 -2.1 893,516 - IAI47_04250 0.20 -0.3 893,516 - IAI47_04250 0.20 -1.4 893,516 - IAI47_04250 0.20 +1.9 893,526 + IAI47_04250 0.21 -1.7 893,526 + IAI47_04250 0.21 -2.0 893,527 - IAI47_04250 0.21 -0.3 893,527 - IAI47_04250 0.21 -0.7 893,609 + IAI47_04250 0.27 -0.5 893,609 + IAI47_04250 0.27 +3.8 893,610 - IAI47_04250 0.27 -0.5 893,640 + IAI47_04250 0.29 -0.3 893,640 + IAI47_04250 0.29 +0.5 893,640 + IAI47_04250 0.29 +1.5 893,641 - IAI47_04250 0.29 -1.6 893,641 - IAI47_04250 0.29 -3.8 893,676 + IAI47_04250 0.31 +3.7 893,676 + IAI47_04250 0.31 +1.0 893,676 + IAI47_04250 0.31 +3.3 893,676 + IAI47_04250 0.31 +3.4 893,677 - IAI47_04250 0.31 -1.2 893,677 - IAI47_04250 0.31 +0.6 893,677 - IAI47_04250 0.31 -2.5 893,677 - IAI47_04250 0.31 +1.3 893,835 + IAI47_04250 0.43 +1.0 893,844 + IAI47_04250 0.43 +3.7 893,844 + IAI47_04250 0.43 -0.0 893,844 + IAI47_04250 0.43 +4.4 893,844 + IAI47_04250 0.43 +3.6 893,844 + IAI47_04250 0.43 +3.3 893,844 + IAI47_04250 0.43 +5.2 893,844 + IAI47_04250 0.43 +4.7 893,845 - IAI47_04250 0.44 -0.5 893,845 - IAI47_04250 0.44 +3.0 893,891 + IAI47_04250 0.47 +4.5
Or see this region's nucleotide sequence