Strain Fitness in Pantoea sp. MT58 around IAI47_00230

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
48,880	+				-0.6
48,880	+				+1.3
48,880	+				-0.6
48,880	+				+1.7
48,881	-				-1.7
48,881	-				-0.6
48,881	-				+1.6
48,881	-				-1.7
48,893	+				+0.7
48,894	-				+3.3
48,908	+				+1.5
48,909	-				+1.4
48,929	+				-0.3
48,935	+				-0.5
48,935	+				-1.8
48,935	+				+3.1
48,935	+				+1.3
48,935	+				+1.4
48,935	+				-2.6
48,936	-				+0.5
48,936	-				+0.8
48,936	-				-0.0
48,936	-				+1.1
48,936	-				-2.9
48,936	-				-3.4
48,949	+				+0.8
48,949	+				-1.7
48,949	+				-3.8
48,949	+				+2.7
48,949	+				-4.3
48,949	+				+0.1
48,950	-				-0.0
48,950	-				-2.5
48,950	-				-0.7
48,951	+				+0.1
48,951	+				+3.2
48,951	+				-1.2
48,951	+				-3.8
48,951	+				-0.3
48,952	-				+1.2
48,981	+				+2.1
48,991	+				-1.0
48,991	+				+1.6
48,992	-				-2.1
48,992	-				+0.3
48,992	-				-0.4
49,045	+				-2.2
49,108	+		IAI47_00225	0.14	+0.4
49,108	+		IAI47_00225	0.14	+1.6
49,237	+		IAI47_00225	0.29	-1.2
49,237	+		IAI47_00225	0.29	+0.6
49,237	+		IAI47_00225	0.29	+1.6
49,238	-		IAI47_00225	0.29	+0.6
49,238	-		IAI47_00225	0.29	+1.5
49,238	-		IAI47_00225	0.29	-2.8
49,309	-		IAI47_00225	0.37	-1.2
49,309	-		IAI47_00225	0.37	-0.2
49,360	+		IAI47_00225	0.43	+0.5
49,361	+		IAI47_00225	0.43	-1.3
49,361	-		IAI47_00225	0.43	-2.7
49,361	-		IAI47_00225	0.43	+1.3
49,449	+		IAI47_00225	0.53	-2.9
49,449	+		IAI47_00225	0.53	-1.5
49,449	+		IAI47_00225	0.53	+1.9
49,449	+		IAI47_00225	0.53	-0.4
49,450	-		IAI47_00225	0.53	+0.7
49,450	-		IAI47_00225	0.53	+0.9
49,450	-		IAI47_00225	0.53	-1.3
49,450	-		IAI47_00225	0.53	+1.1
49,499	-		IAI47_00225	0.58	+1.1
49,501	+		IAI47_00225	0.58	+1.4
49,501	+		IAI47_00225	0.58	-3.6
49,501	+		IAI47_00225	0.58	-2.0
49,539	+		IAI47_00225	0.63	-3.6
49,539	+		IAI47_00225	0.63	-1.0
49,539	+		IAI47_00225	0.63	+1.7
49,540	-		IAI47_00225	0.63	-0.9
49,551	+		IAI47_00225	0.64	-1.7
49,551	+		IAI47_00225	0.64	+1.9
49,551	+		IAI47_00225	0.64	+0.7
49,551	+		IAI47_00225	0.64	-1.6
49,551	+		IAI47_00225	0.64	+2.4
49,551	+		IAI47_00225	0.64	+0.3
49,551	+		IAI47_00225	0.64	-0.5
49,552	-		IAI47_00225	0.64	-0.4
49,552	-		IAI47_00225	0.64	+1.8
49,555	+		IAI47_00225	0.65	-1.0
49,555	+		IAI47_00225	0.65	-1.4
49,556	-		IAI47_00225	0.65	-0.4
49,579	+		IAI47_00225	0.67	+1.0
49,700	+		IAI47_00225	0.81	-1.7
49,700	+		IAI47_00225	0.81	+1.0
49,700	+		IAI47_00225	0.81	-2.5
49,700	+		IAI47_00225	0.81	-0.6
49,700	+		IAI47_00225	0.81	-2.6
49,700	+		IAI47_00225	0.81	-1.4
49,701	-		IAI47_00225	0.81	-0.7
49,701	-		IAI47_00225	0.81	-0.5
49,701	-		IAI47_00225	0.81	-0.4
49,701	-		IAI47_00225	0.81	+0.2
49,720	+		IAI47_00225	0.83	-1.2
49,721	-		IAI47_00225	0.83	-0.4
49,796	-				-0.5
49,798	+				-0.9
49,798	+				+0.6
49,798	+				+1.5
49,799	-				-1.4
49,902	+				-1.5
49,902	+				+1.4
49,902	+				+1.7
49,902	+				+3.5
49,902	+				-0.6
49,903	-				-1.4
49,903	-				-1.9
49,932	+				-3.0
49,938	+				+1.1
49,939	-				+1.2
49,939	-				-0.4
49,939	-				+0.1
50,028	+		IAI47_00230	0.17	-0.8
50,028	+		IAI47_00230	0.17	-1.7
50,028	+		IAI47_00230	0.17	-1.5
50,028	+		IAI47_00230	0.17	+0.4
50,029	-		IAI47_00230	0.17	-2.4
50,029	-		IAI47_00230	0.17	-0.4
50,029	-		IAI47_00230	0.17	-2.2
50,029	-		IAI47_00230	0.17	+0.9
50,029	-		IAI47_00230	0.17	-2.1
50,046	+		IAI47_00230	0.19	-1.0
50,046	+		IAI47_00230	0.19	-1.7
50,047	-		IAI47_00230	0.19	-1.7
50,072	+		IAI47_00230	0.21	+2.1
50,072	+		IAI47_00230	0.21	+0.2
50,072	+		IAI47_00230	0.21	+2.1
50,073	-		IAI47_00230	0.21	-1.6
50,073	-		IAI47_00230	0.21	-0.2
50,073	-		IAI47_00230	0.21	+2.4
50,073	-		IAI47_00230	0.21	-2.8
50,073	-		IAI47_00230	0.21	-1.0
50,085	+		IAI47_00230	0.23	-0.8
50,088	+		IAI47_00230	0.23	+0.7
50,088	+		IAI47_00230	0.23	-1.2
50,088	+		IAI47_00230	0.23	+0.8
50,088	+		IAI47_00230	0.23	-2.4
50,088	+		IAI47_00230	0.23	-1.7
50,088	+		IAI47_00230	0.23	-2.6
50,089	-		IAI47_00230	0.23	+1.2
50,089	-		IAI47_00230	0.23	-1.4
50,089	-		IAI47_00230	0.23	-2.7
50,089	-		IAI47_00230	0.23	+1.4
50,089	-		IAI47_00230	0.23	-0.1
50,164	-		IAI47_00230	0.31	+1.1
50,216	+		IAI47_00230	0.36	+1.7
50,216	+		IAI47_00230	0.36	+0.7
50,217	-		IAI47_00230	0.36	-0.7
50,279	+		IAI47_00230	0.43	+2.6
50,279	+		IAI47_00230	0.43	-0.6
50,279	+		IAI47_00230	0.43	+1.9
50,279	+		IAI47_00230	0.43	+1.1
50,280	-		IAI47_00230	0.43	+1.2
50,280	-		IAI47_00230	0.43	-0.9
50,280	-		IAI47_00230	0.43	+1.1
50,280	-		IAI47_00230	0.43	+1.1
50,280	-		IAI47_00230	0.43	+1.1
50,280	-		IAI47_00230	0.43	-0.6
50,322	+		IAI47_00230	0.47	-0.7
50,322	+		IAI47_00230	0.47	+0.9
50,457	+		IAI47_00230	0.61	-2.7
50,458	-		IAI47_00230	0.61	+0.1
50,484	+		IAI47_00230	0.64	-2.4
50,485	-		IAI47_00230	0.64	+2.4
50,568	+		IAI47_00230	0.73	-2.1
50,590	+		IAI47_00230	0.75	+2.4
50,590	+		IAI47_00230	0.75	+2.4
50,590	+		IAI47_00230	0.75	+2.9
50,590	+		IAI47_00230	0.75	-3.6
50,590	+		IAI47_00230	0.75	-2.6
50,591	-		IAI47_00230	0.75	-1.7
50,591	-		IAI47_00230	0.75	-0.4
50,591	-		IAI47_00230	0.75	+0.5
50,591	-		IAI47_00230	0.75	-1.3
50,591	-		IAI47_00230	0.75	-2.0
50,591	-		IAI47_00230	0.75	-1.6
50,591	-		IAI47_00230	0.75	-0.6
50,591	-		IAI47_00230	0.75	+0.9
50,591	-		IAI47_00230	0.75	-0.1
50,603	+		IAI47_00230	0.76	-0.4
50,603	+		IAI47_00230	0.76	+0.4
50,603	+		IAI47_00230	0.76	-3.7
50,603	+		IAI47_00230	0.76	-2.9
50,604	-		IAI47_00230	0.77	+0.8
50,604	-		IAI47_00230	0.77	-0.5
50,612	-		IAI47_00230	0.77	+1.7
50,718	+		IAI47_00230	0.88	-0.3
50,718	+		IAI47_00230	0.88	+0.5
50,718	+		IAI47_00230	0.88	+0.6
50,718	+		IAI47_00230	0.88	-0.4
50,719	-		IAI47_00230	0.88	-1.6
50,719	-		IAI47_00230	0.88	+0.4
50,719	-		IAI47_00230	0.88	+1.1
50,734	+				-1.4
50,735	-				-1.9
50,735	-				+3.8
50,740	+				-1.7
50,740	+				+0.6
50,740	+				-0.2
50,740	+				-2.5
50,740	+				+1.0
50,740	+				-1.7
50,740	+				+5.1
50,740	+				-0.3
50,740	+				-1.4
50,740	+				-1.7
50,740	+				+3.2
50,740	+				+2.3
50,740	+				+0.1
50,740	+				+0.5
50,741	-				-0.5
50,741	-				+2.1
50,741	-				+0.9
50,741	-				+1.3
50,741	-				+1.8
50,741	-				-0.8
50,741	-				-1.9
50,741	-				-3.0
50,829	+				+3.2
50,829	+				-1.0
50,829	+				-2.9
50,829	+				-2.5
50,829	+				-2.5
50,829	+				+0.1
50,829	+				+0.4
50,829	+				-3.5
50,830	-				+2.2
50,830	-				-1.2
50,830	-				+2.0
50,852	+				+1.1
50,852	+				-0.3
50,852	+				-3.1
50,853	-				-1.0
50,853	-				+0.6
50,917	+				+1.0
50,918	-				-1.9
50,918	-				-2.0
50,923	+				+1.5
50,923	+				-1.5
50,934	-				+3.0
50,934	-				+1.8
51,007	+				+0.9
51,008	-				-0.7
51,008	-				-2.0
51,008	-				+2.0
51,008	-				-0.7
51,008	-				-1.1
51,043	+		IAI47_00235	0.12	+0.5
51,043	+		IAI47_00235	0.12	-4.2
51,043	+		IAI47_00235	0.12	+2.6
51,043	+		IAI47_00235	0.12	+0.8
51,044	-		IAI47_00235	0.12	+3.0
51,066	+		IAI47_00235	0.14	+2.4
51,067	-		IAI47_00235	0.14	-1.4
51,067	-		IAI47_00235	0.14	-0.6
51,067	-		IAI47_00235	0.14	+2.2
51,101	+		IAI47_00235	0.18	-0.7
51,101	+		IAI47_00235	0.18	+0.3
51,101	+		IAI47_00235	0.18	-1.4
51,102	-		IAI47_00235	0.18	+1.1
51,102	-		IAI47_00235	0.18	-0.6
51,103	+		IAI47_00235	0.18	-0.8
51,103	+		IAI47_00235	0.18	-0.4
51,103	+		IAI47_00235	0.18	-0.2
51,104	-		IAI47_00235	0.18	-1.0
51,104	-		IAI47_00235	0.18	-1.1
51,104	-		IAI47_00235	0.18	+3.5
51,104	-		IAI47_00235	0.18	+1.0
51,104	-		IAI47_00235	0.18	+0.9
51,242	+		IAI47_00235	0.31	-2.3
51,242	+		IAI47_00235	0.31	+0.5
51,242	+		IAI47_00235	0.31	+0.3
51,268	+		IAI47_00235	0.34	+2.0
51,268	+		IAI47_00235	0.34	+2.8
51,269	-		IAI47_00235	0.34	-2.6
51,269	-		IAI47_00235	0.34	-0.2
51,269	-		IAI47_00235	0.34	+1.8
51,287	+		IAI47_00235	0.36	+0.7
51,287	+		IAI47_00235	0.36	+3.3
51,287	+		IAI47_00235	0.36	-1.5
51,287	+		IAI47_00235	0.36	-2.3
51,292	+		IAI47_00235	0.36	-2.3
51,292	+		IAI47_00235	0.36	+0.8
51,293	-		IAI47_00235	0.36	-1.7
51,293	-		IAI47_00235	0.36	-0.7
51,298	+		IAI47_00235	0.37	-2.1
51,298	+		IAI47_00235	0.37	-1.7
51,299	-		IAI47_00235	0.37	+1.0
51,299	-		IAI47_00235	0.37	-1.0
51,307	+		IAI47_00235	0.37	-1.5
51,308	-		IAI47_00235	0.38	-2.0
51,308	-		IAI47_00235	0.38	-1.5
51,362	+		IAI47_00235	0.43	-3.2
51,443	-		IAI47_00235	0.50	-0.4
51,443	-		IAI47_00235	0.50	+0.5
51,574	+		IAI47_00235	0.63	-2.0
51,574	+		IAI47_00235	0.63	-0.4
51,574	+		IAI47_00235	0.63	+1.5
51,574	+		IAI47_00235	0.63	-4.0
51,574	+		IAI47_00235	0.63	+2.3
51,574	+		IAI47_00235	0.63	+1.4
51,575	-		IAI47_00235	0.63	-2.0
51,575	-		IAI47_00235	0.63	+1.4
51,575	-		IAI47_00235	0.63	-2.4
51,575	-		IAI47_00235	0.63	-0.9
51,578	+		IAI47_00235	0.63	-0.5
51,578	+		IAI47_00235	0.63	+2.0
51,578	+		IAI47_00235	0.63	-0.5
51,579	-		IAI47_00235	0.64	-1.3
51,579	-		IAI47_00235	0.64	-0.1
51,635	+		IAI47_00235	0.69	-2.1
51,636	-		IAI47_00235	0.69	-1.2
51,636	-		IAI47_00235	0.69	+2.4
51,636	-		IAI47_00235	0.69	+0.1
51,645	+		IAI47_00235	0.70	+1.2
51,646	-		IAI47_00235	0.70	-2.7
51,646	-		IAI47_00235	0.70	-0.2
51,787	+		IAI47_00235	0.83	-2.6
51,787	+		IAI47_00235	0.83	-0.7
51,787	+		IAI47_00235	0.83	-1.3
51,788	-		IAI47_00235	0.84	-1.4
51,816	-		IAI47_00235	0.86	-1.7
51,817	+		IAI47_00235	0.86	-1.9
51,818	-		IAI47_00235	0.86	-2.2