Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4184

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4182 and Ga0059261_4183 are separated by 160 nucleotidesGa0059261_4183 and Ga0059261_4184 are separated by 38 nucleotidesGa0059261_4184 and Ga0059261_4185 overlap by 13 nucleotidesGa0059261_4185 and Ga0059261_4186 are separated by 41 nucleotides Ga0059261_4182: Ga0059261_4182 - thioredoxin-disulfide reductase, at 4,333,280 to 4,334,251 _4182 Ga0059261_4183: Ga0059261_4183 - Predicted ATPase, at 4,334,412 to 4,335,173 _4183 Ga0059261_4184: Ga0059261_4184 - exosortase A system-associated hydrolase 1, at 4,335,212 to 4,336,024 _4184 Ga0059261_4185: Ga0059261_4185 - hypothetical protein, at 4,336,012 to 4,336,668 _4185 Ga0059261_4186: Ga0059261_4186 - Phosphopantetheine attachment site, at 4,336,710 to 4,336,982 _4186 Position (kb) 4335 4336 4337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4334.250 kb on - strandat 4334.250 kb on - strandat 4334.272 kb on + strandat 4334.272 kb on + strandat 4334.272 kb on + strandat 4334.273 kb on - strandat 4334.273 kb on - strandat 4334.273 kb on - strandat 4334.299 kb on - strandat 4334.299 kb on - strandat 4334.306 kb on - strandat 4334.329 kb on - strandat 4334.329 kb on - strandat 4334.374 kb on + strandat 4334.374 kb on + strandat 4334.374 kb on + strandat 4334.374 kb on + strandat 4334.374 kb on + strandat 4334.374 kb on + strandat 4334.375 kb on - strandat 4334.375 kb on - strandat 4334.375 kb on - strandat 4334.375 kb on - strandat 4334.375 kb on - strandat 4334.375 kb on - strandat 4334.446 kb on + strandat 4334.613 kb on + strand, within Ga0059261_4183at 4334.614 kb on - strand, within Ga0059261_4183at 4334.614 kb on - strand, within Ga0059261_4183at 4334.614 kb on - strand, within Ga0059261_4183at 4334.675 kb on + strand, within Ga0059261_4183at 4334.675 kb on + strand, within Ga0059261_4183at 4334.676 kb on - strand, within Ga0059261_4183at 4334.676 kb on - strand, within Ga0059261_4183at 4334.676 kb on - strandat 4334.677 kb on + strandat 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.677 kb on + strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.678 kb on - strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.746 kb on + strand, within Ga0059261_4183at 4334.747 kb on - strand, within Ga0059261_4183at 4334.747 kb on - strand, within Ga0059261_4183at 4334.747 kb on - strand, within Ga0059261_4183at 4334.747 kb on - strand, within Ga0059261_4183at 4334.779 kb on + strand, within Ga0059261_4183at 4334.970 kb on + strand, within Ga0059261_4183at 4334.970 kb on + strand, within Ga0059261_4183at 4334.971 kb on - strand, within Ga0059261_4183at 4335.072 kb on - strand, within Ga0059261_4183at 4335.184 kb on + strandat 4335.184 kb on + strandat 4335.184 kb on + strandat 4335.185 kb on - strandat 4335.185 kb on - strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.189 kb on + strandat 4335.190 kb on - strandat 4335.485 kb on + strand, within Ga0059261_4184at 4335.485 kb on + strand, within Ga0059261_4184at 4335.486 kb on - strand, within Ga0059261_4184at 4335.511 kb on + strand, within Ga0059261_4184at 4335.568 kb on + strand, within Ga0059261_4184at 4335.569 kb on - strand, within Ga0059261_4184at 4335.570 kb on + strand, within Ga0059261_4184at 4335.571 kb on - strand, within Ga0059261_4184at 4335.571 kb on - strand, within Ga0059261_4184at 4335.652 kb on + strand, within Ga0059261_4184at 4335.652 kb on + strand, within Ga0059261_4184at 4335.652 kb on + strand, within Ga0059261_4184at 4335.652 kb on + strand, within Ga0059261_4184at 4335.653 kb on - strand, within Ga0059261_4184at 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.037 kb on - strandat 4336.037 kb on - strandat 4336.365 kb on - strand, within Ga0059261_4185at 4336.407 kb on + strand, within Ga0059261_4185at 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.695 kb on - strandat 4336.695 kb on - strandat 4336.695 kb on - strandat 4336.740 kb on + strand, within Ga0059261_4186at 4336.935 kb on + strand, within Ga0059261_4186at 4336.935 kb on + strandat 4336.936 kb on - strand, within Ga0059261_4186at 4336.998 kb on + strandat 4336.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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4,334,250 - -0.6
4,334,250 - -0.1
4,334,272 + -0.2
4,334,272 + -0.2
4,334,272 + +3.2
4,334,273 - -1.4
4,334,273 - +1.5
4,334,273 - -0.2
4,334,299 - -0.4
4,334,299 - -0.6
4,334,306 - -1.9
4,334,329 - +1.7
4,334,329 - +0.5
4,334,374 + -0.4
4,334,374 + +0.6
4,334,374 + -2.0
4,334,374 + -1.9
4,334,374 + +1.4
4,334,374 + +0.1
4,334,375 - +0.5
4,334,375 - +0.9
4,334,375 - +1.6
4,334,375 - +1.6
4,334,375 - -2.2
4,334,375 - +1.8
4,334,446 + -3.0
4,334,613 + Ga0059261_4183 0.26 +0.1
4,334,614 - Ga0059261_4183 0.27 +1.1
4,334,614 - Ga0059261_4183 0.27 +0.6
4,334,614 - Ga0059261_4183 0.27 -2.7
4,334,675 + Ga0059261_4183 0.35 +0.6
4,334,675 + Ga0059261_4183 0.35 -2.1
4,334,676 - Ga0059261_4183 0.35 -1.5
4,334,676 - Ga0059261_4183 0.35 -1.8
4,334,676 - +2.8
4,334,677 + -0.1
4,334,677 + Ga0059261_4183 0.35 -1.1
4,334,677 + Ga0059261_4183 0.35 -0.2
4,334,677 + Ga0059261_4183 0.35 +1.0
4,334,677 + Ga0059261_4183 0.35 -0.4
4,334,677 + Ga0059261_4183 0.35 -0.8
4,334,677 + Ga0059261_4183 0.35 +0.2
4,334,677 + Ga0059261_4183 0.35 +0.5
4,334,677 + Ga0059261_4183 0.35 +0.3
4,334,677 + Ga0059261_4183 0.35 +0.6
4,334,677 + Ga0059261_4183 0.35 -0.6
4,334,678 - Ga0059261_4183 0.35 +1.3
4,334,678 - Ga0059261_4183 0.35 -2.4
4,334,678 - Ga0059261_4183 0.35 +1.8
4,334,678 - Ga0059261_4183 0.35 +0.1
4,334,678 - Ga0059261_4183 0.35 -1.1
4,334,678 - Ga0059261_4183 0.35 -0.8
4,334,678 - Ga0059261_4183 0.35 -1.0
4,334,678 - Ga0059261_4183 0.35 +2.1
4,334,678 - Ga0059261_4183 0.35 -2.7
4,334,678 - Ga0059261_4183 0.35 -0.6
4,334,678 - Ga0059261_4183 0.35 -0.8
4,334,678 - Ga0059261_4183 0.35 +1.7
4,334,678 - Ga0059261_4183 0.35 -0.5
4,334,746 + Ga0059261_4183 0.44 -1.3
4,334,746 + Ga0059261_4183 0.44 +0.9
4,334,746 + Ga0059261_4183 0.44 -1.4
4,334,746 + Ga0059261_4183 0.44 +0.6
4,334,746 + Ga0059261_4183 0.44 -1.8
4,334,746 + Ga0059261_4183 0.44 +1.0
4,334,746 + Ga0059261_4183 0.44 -1.6
4,334,747 - Ga0059261_4183 0.44 -1.5
4,334,747 - Ga0059261_4183 0.44 +1.1
4,334,747 - Ga0059261_4183 0.44 -0.7
4,334,747 - Ga0059261_4183 0.44 -0.7
4,334,779 + Ga0059261_4183 0.48 -0.8
4,334,970 + Ga0059261_4183 0.73 -0.8
4,334,970 + Ga0059261_4183 0.73 -0.4
4,334,971 - Ga0059261_4183 0.73 -0.8
4,335,072 - Ga0059261_4183 0.87 +0.3
4,335,184 + +0.4
4,335,184 + -1.1
4,335,184 + -1.6
4,335,185 - -0.1
4,335,185 - -0.8
4,335,189 + +0.4
4,335,189 + -0.8
4,335,189 + +6.0
4,335,189 + +1.3
4,335,189 + -1.9
4,335,189 + +1.2
4,335,189 + -1.4
4,335,190 - +0.6
4,335,485 + Ga0059261_4184 0.34 +0.1
4,335,485 + Ga0059261_4184 0.34 -0.5
4,335,486 - Ga0059261_4184 0.34 -1.6
4,335,511 + Ga0059261_4184 0.37 -1.5
4,335,568 + Ga0059261_4184 0.44 -0.4
4,335,569 - Ga0059261_4184 0.44 +1.8
4,335,570 + Ga0059261_4184 0.44 +1.5
4,335,571 - Ga0059261_4184 0.44 -1.2
4,335,571 - Ga0059261_4184 0.44 -0.7
4,335,652 + Ga0059261_4184 0.54 -1.9
4,335,652 + Ga0059261_4184 0.54 +1.2
4,335,652 + Ga0059261_4184 0.54 -2.1
4,335,652 + Ga0059261_4184 0.54 +1.2
4,335,653 - Ga0059261_4184 0.54 -0.9
4,336,036 + -0.9
4,336,036 + +3.4
4,336,036 + +0.2
4,336,036 + +0.0
4,336,037 - +0.4
4,336,037 - +0.3
4,336,365 - Ga0059261_4185 0.54 -1.1
4,336,407 + Ga0059261_4185 0.60 -1.3
4,336,694 + -0.6
4,336,694 + -0.8
4,336,694 + -1.1
4,336,694 + -1.9
4,336,694 + +0.3
4,336,695 - +0.0
4,336,695 - +1.6
4,336,695 - -0.5
4,336,740 + Ga0059261_4186 0.11 -1.9
4,336,935 + Ga0059261_4186 0.82 -0.6
4,336,935 + -0.4
4,336,936 - Ga0059261_4186 0.83 -2.4
4,336,998 + -1.6
4,336,999 - +1.4

Or see this region's nucleotide sequence