Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3847

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,946,335	+		Ga0059261_3846	0.75	+0.4
3,946,335	+		Ga0059261_3846	0.75	-1.2
3,946,335	+		Ga0059261_3846	0.75	-0.4
3,946,336	-		Ga0059261_3846	0.75	+0.7
3,946,336	-		Ga0059261_3846	0.75	-0.4
3,946,344	+		Ga0059261_3846	0.76	-0.4
3,946,344	+		Ga0059261_3846	0.76	-0.1
3,946,344	+		Ga0059261_3846	0.76	+0.6
3,946,344	+		Ga0059261_3846	0.76	-0.5
3,946,344	+		Ga0059261_3846	0.76	-1.0
3,946,344	+		Ga0059261_3846	0.76	-1.7
3,946,344	+		Ga0059261_3846	0.76	-2.0
3,946,344	+		Ga0059261_3846	0.76	+1.2
3,946,344	+		Ga0059261_3846	0.76	-1.7
3,946,345	-		Ga0059261_3846	0.76	+1.1
3,946,345	-		Ga0059261_3846	0.76	+1.2
3,946,345	-		Ga0059261_3846	0.76	-1.3
3,946,345	-		Ga0059261_3846	0.76	+0.6
3,946,346	+		Ga0059261_3846	0.76	+3.0
3,946,346	+		Ga0059261_3846	0.76	-0.7
3,946,347	-		Ga0059261_3846	0.76	-3.0
3,946,347	-		Ga0059261_3846	0.76	+0.0
3,946,347	-		Ga0059261_3846	0.76	+0.0
3,946,362	+		Ga0059261_3846	0.76	+0.4
3,946,362	+		Ga0059261_3846	0.76	-0.8
3,946,363	-		Ga0059261_3846	0.76	-1.0
3,946,363	-		Ga0059261_3846	0.76	-0.2
3,946,363	-		Ga0059261_3846	0.76	-3.0
3,946,383	+		Ga0059261_3846	0.77	+2.1
3,946,383	+		Ga0059261_3846	0.77	-1.0
3,946,383	+		Ga0059261_3846	0.77	+3.3
3,946,384	-		Ga0059261_3846	0.77	-1.2
3,946,384	-		Ga0059261_3846	0.77	-3.3
3,946,384	-		Ga0059261_3846	0.77	-0.4
3,946,384	-		Ga0059261_3846	0.77	-0.7
3,946,397	+		Ga0059261_3846	0.77	-0.8
3,946,398	-		Ga0059261_3846	0.77	-1.2
3,946,401	+		Ga0059261_3846	0.78	-0.6
3,946,401	+		Ga0059261_3846	0.78	+3.0
3,946,401	+		Ga0059261_3846	0.78	-1.2
3,946,401	+		Ga0059261_3846	0.78	-1.0
3,946,401	+		Ga0059261_3846	0.78	+0.2
3,946,401	+		Ga0059261_3846	0.78	+0.2
3,946,401	+		Ga0059261_3846	0.78	+1.1
3,946,401	+		Ga0059261_3846	0.78	+0.6
3,946,401	+		Ga0059261_3846	0.78	+3.1
3,946,401	+		Ga0059261_3846	0.78	-0.5
3,946,401	+		Ga0059261_3846	0.78	+2.7
3,946,401	+		Ga0059261_3846	0.78	-2.5
3,946,401	+		Ga0059261_3846	0.78	-0.6
3,946,401	+		Ga0059261_3846	0.78	+0.7
3,946,401	+		Ga0059261_3846	0.78	-1.0
3,946,401	+				+4.2
3,946,401	+		Ga0059261_3846	0.78	+0.8
3,946,401	+		Ga0059261_3846	0.78	-0.8
3,946,401	+		Ga0059261_3846	0.78	+0.4
3,946,401	+		Ga0059261_3846	0.78	-3.6
3,946,401	+		Ga0059261_3846	0.78	-1.3
3,946,401	+		Ga0059261_3846	0.78	+0.5
3,946,402	-		Ga0059261_3846	0.78	+3.1
3,946,402	-		Ga0059261_3846	0.78	-1.0
3,946,402	-		Ga0059261_3846	0.78	+0.6
3,946,402	-		Ga0059261_3846	0.78	-2.4
3,946,402	-		Ga0059261_3846	0.78	-0.1
3,946,402	-		Ga0059261_3846	0.78	+1.9
3,946,402	-		Ga0059261_3846	0.78	-2.7
3,946,402	-		Ga0059261_3846	0.78	-1.7
3,946,402	-		Ga0059261_3846	0.78	+0.5
3,946,402	-		Ga0059261_3846	0.78	+2.2
3,946,402	-		Ga0059261_3846	0.78	-0.2
3,946,402	-		Ga0059261_3846	0.78	-0.8
3,946,402	-		Ga0059261_3846	0.78	+0.4
3,946,402	-		Ga0059261_3846	0.78	-1.2
3,946,402	-		Ga0059261_3846	0.78	-1.4
3,946,402	-		Ga0059261_3846	0.78	+0.1
3,946,402	-		Ga0059261_3846	0.78	+0.0
3,946,402	-		Ga0059261_3846	0.78	+1.2
3,946,402	-		Ga0059261_3846	0.78	+1.8
3,946,402	-		Ga0059261_3846	0.78	-1.8
3,946,402	-		Ga0059261_3846	0.78	-0.4
3,946,402	-				+0.0
3,946,402	-		Ga0059261_3846	0.78	-0.5
3,946,402	-		Ga0059261_3846	0.78	-0.0
3,946,402	-		Ga0059261_3846	0.78	-0.8
3,946,402	-		Ga0059261_3846	0.78	-0.0
3,946,402	-		Ga0059261_3846	0.78	-1.7
3,946,402	-		Ga0059261_3846	0.78	+0.0
3,946,402	-		Ga0059261_3846	0.78	-1.7
3,946,402	-		Ga0059261_3846	0.78	-2.3
3,946,403	+		Ga0059261_3846	0.78	-2.2
3,946,403	+		Ga0059261_3846	0.78	+0.2
3,946,403	+		Ga0059261_3846	0.78	-0.6
3,946,403	+		Ga0059261_3846	0.78	+0.8
3,946,403	+		Ga0059261_3846	0.78	+1.2
3,946,403	+		Ga0059261_3846	0.78	-2.0
3,946,403	+		Ga0059261_3846	0.78	-1.1
3,946,403	+		Ga0059261_3846	0.78	+0.6
3,946,404	-		Ga0059261_3846	0.78	+1.1
3,946,404	-		Ga0059261_3846	0.78	+0.9
3,946,404	-		Ga0059261_3846	0.78	-2.6
3,946,404	-		Ga0059261_3846	0.78	-0.4
3,946,404	-		Ga0059261_3846	0.78	-0.6
3,946,404	-		Ga0059261_3846	0.78	-1.9
3,946,404	-		Ga0059261_3846	0.78	-2.5
3,946,404	-		Ga0059261_3846	0.78	-0.8
3,946,404	-		Ga0059261_3846	0.78	-0.5
3,946,404	-		Ga0059261_3846	0.78	-1.0
3,946,407	+		Ga0059261_3846	0.78	+0.6
3,946,407	+		Ga0059261_3846	0.78	-0.4
3,946,408	-		Ga0059261_3846	0.78	-2.2
3,946,408	-		Ga0059261_3846	0.78	+2.3
3,946,408	-		Ga0059261_3846	0.78	+0.8
3,946,408	-		Ga0059261_3846	0.78	+0.0
3,946,422	-		Ga0059261_3846	0.78	-0.4
3,946,470	+		Ga0059261_3846	0.80	-2.0
3,946,471	-		Ga0059261_3846	0.80	+0.4
3,946,695	+		Ga0059261_3846	0.88	-0.9
3,946,695	+		Ga0059261_3846	0.88	-1.1
3,946,695	+		Ga0059261_3846	0.88	+1.3
3,946,695	+		Ga0059261_3846	0.88	+0.5
3,946,696	-		Ga0059261_3846	0.88	+0.1
3,946,696	-		Ga0059261_3846	0.88	-0.8
3,946,696	-		Ga0059261_3846	0.88	+2.6
3,946,696	-		Ga0059261_3846	0.88	+0.1
3,946,696	-		Ga0059261_3846	0.88	+0.5
3,946,696	-		Ga0059261_3846	0.88	-1.5
3,946,696	-		Ga0059261_3846	0.88	+0.2
3,946,696	-		Ga0059261_3846	0.88	+0.9
3,946,700	+		Ga0059261_3846	0.88	-0.5
3,946,700	+		Ga0059261_3846	0.88	+0.8
3,946,701	-		Ga0059261_3846	0.88	+1.2
3,946,701	-		Ga0059261_3846	0.88	+0.8
3,946,701	-		Ga0059261_3846	0.88	+2.8
3,946,701	-		Ga0059261_3846	0.88	-1.8
3,946,701	-		Ga0059261_3846	0.88	-0.2
3,946,701	-		Ga0059261_3846	0.88	-2.9
3,946,711	-		Ga0059261_3846	0.88	-1.9
3,946,711	-		Ga0059261_3846	0.88	+0.6
3,946,711	-		Ga0059261_3846	0.88	+1.2
3,946,711	-		Ga0059261_3846	0.88	-2.5
3,946,713	+		Ga0059261_3846	0.89	-0.5
3,946,713	+		Ga0059261_3846	0.89	+0.2
3,946,713	+		Ga0059261_3846	0.89	-0.1
3,946,713	+		Ga0059261_3846	0.89	-0.1
3,946,714	-		Ga0059261_3846	0.89	-0.9
3,946,714	-		Ga0059261_3846	0.89	-1.2
3,946,714	-		Ga0059261_3846	0.89	-0.1
3,946,746	+				+0.6
3,946,747	-		Ga0059261_3846	0.90	-0.2
3,946,848	+				+1.2
3,946,848	+				-1.2
3,946,850	+				+0.7
3,946,850	+				-0.7
3,946,850	+				+0.5
3,946,850	+				-0.7
3,946,850	+				+1.5
3,946,850	+				+2.4
3,946,850	+				-1.5
3,946,850	+				+1.9
3,946,850	+				-0.5
3,946,850	+				-1.1
3,946,850	+				+0.3
3,946,850	+				-0.4
3,946,851	-				+0.0
3,946,851	-				+0.5
3,946,851	-				-0.0
3,946,851	-				-0.1
3,946,851	-				-2.9
3,946,851	-				-0.6
3,946,851	-				+0.5
3,946,851	-				+0.7
3,946,920	+				-0.0
3,946,921	-				-0.1
3,946,925	+				-1.0
3,946,925	+				-1.1
3,946,989	+				-0.8
3,946,989	+				-1.3
3,946,990	-				-1.1
3,947,028	+				-0.0
3,947,028	+				-0.7
3,947,160	+				-0.3
3,947,161	-				-1.5
3,947,232	+				-2.0
3,947,232	+				+0.7
3,947,232	+				+1.3
3,947,232	+				+0.4
3,947,232	+				-0.2
3,947,232	+				-0.6
3,947,233	-				+0.0
3,947,233	-				-0.9
3,947,233	-				+0.4
3,947,233	-				-2.0
3,947,233	-				-1.5
3,947,375	-		Ga0059261_3847	0.11	+3.6
3,947,375	-		Ga0059261_3847	0.11	-2.3
3,947,375	-		Ga0059261_3847	0.11	-0.0
3,947,404	+		Ga0059261_3847	0.13	-0.7
3,947,404	+		Ga0059261_3847	0.13	+1.1
3,947,404	+		Ga0059261_3847	0.13	+0.9
3,947,404	+		Ga0059261_3847	0.13	-1.8
3,947,404	+		Ga0059261_3847	0.13	-2.2
3,947,404	+		Ga0059261_3847	0.13	+0.0
3,947,405	-		Ga0059261_3847	0.13	-1.3
3,947,405	-		Ga0059261_3847	0.13	+2.1
3,947,405	-		Ga0059261_3847	0.13	+0.6
3,947,405	-		Ga0059261_3847	0.13	-0.5
3,947,405	-		Ga0059261_3847	0.13	+0.5
3,947,406	+		Ga0059261_3847	0.13	-0.7
3,947,406	+		Ga0059261_3847	0.13	-1.4
3,947,407	-		Ga0059261_3847	0.13	-1.9
3,947,407	-		Ga0059261_3847	0.13	-2.0
3,947,494	+		Ga0059261_3847	0.18	+0.3
3,947,494	+		Ga0059261_3847	0.18	-0.9
3,947,497	+		Ga0059261_3847	0.18	-1.7
3,947,561	+		Ga0059261_3847	0.21	-3.0
3,947,562	-		Ga0059261_3847	0.21	+0.6
3,947,562	-		Ga0059261_3847	0.21	-3.5
3,947,562	-		Ga0059261_3847	0.21	-0.1
3,947,562	-		Ga0059261_3847	0.21	+0.6
3,947,607	+		Ga0059261_3847	0.23	+1.0
3,947,608	-		Ga0059261_3847	0.23	-1.5
3,947,608	-		Ga0059261_3847	0.23	+1.8
3,947,608	-		Ga0059261_3847	0.23	-2.0
3,947,690	+		Ga0059261_3847	0.28	+1.2
3,947,690	+		Ga0059261_3847	0.28	-1.9
3,947,690	+		Ga0059261_3847	0.28	-0.6
3,947,690	+		Ga0059261_3847	0.28	+0.6
3,947,691	-		Ga0059261_3847	0.28	+2.0
3,947,691	-		Ga0059261_3847	0.28	-0.5
3,947,691	-		Ga0059261_3847	0.28	-1.8
3,947,691	-		Ga0059261_3847	0.28	-0.4
3,947,691	-		Ga0059261_3847	0.28	-1.4
3,947,691	-		Ga0059261_3847	0.28	-1.3
3,947,710	-		Ga0059261_3847	0.29	-1.0
3,947,710	-		Ga0059261_3847	0.29	+0.1
3,947,749	+		Ga0059261_3847	0.31	-1.7
3,947,749	+		Ga0059261_3847	0.31	+0.2
3,947,749	+		Ga0059261_3847	0.31	-0.7
3,947,750	-		Ga0059261_3847	0.31	+0.0
3,947,750	-		Ga0059261_3847	0.31	+0.2
3,947,750	-		Ga0059261_3847	0.31	+0.3
3,947,758	+		Ga0059261_3847	0.31	-0.5
3,947,759	-		Ga0059261_3847	0.31	+0.2
3,947,788	+		Ga0059261_3847	0.33	-1.3
3,947,788	+		Ga0059261_3847	0.33	+1.9
3,947,789	-		Ga0059261_3847	0.33	+0.2
3,947,789	-		Ga0059261_3847	0.33	+0.4
3,947,789	-		Ga0059261_3847	0.33	+3.1
3,947,863	+		Ga0059261_3847	0.36	+2.9
3,947,863	+		Ga0059261_3847	0.36	+0.6
3,947,864	-		Ga0059261_3847	0.37	+0.1
3,947,864	-		Ga0059261_3847	0.37	-1.1
3,947,864	-		Ga0059261_3847	0.37	+0.8
3,947,864	-		Ga0059261_3847	0.37	-1.6
3,947,864	-		Ga0059261_3847	0.37	-0.9
3,947,864	-		Ga0059261_3847	0.37	-0.1
3,947,864	-		Ga0059261_3847	0.37	-0.5
3,947,954	-		Ga0059261_3847	0.41	-0.1
3,947,954	-		Ga0059261_3847	0.41	-2.4
3,947,954	-		Ga0059261_3847	0.41	+0.6
3,947,954	-		Ga0059261_3847	0.41	+0.4
3,947,956	+		Ga0059261_3847	0.41	+0.5
3,947,957	-		Ga0059261_3847	0.41	-0.1
3,947,957	-		Ga0059261_3847	0.41	-1.8
3,947,998	+		Ga0059261_3847	0.43	-1.5
3,947,998	+		Ga0059261_3847	0.43	-1.3
3,947,999	-		Ga0059261_3847	0.43	-2.0
3,948,034	+		Ga0059261_3847	0.45	-2.8
3,948,034	+		Ga0059261_3847	0.45	-0.4
3,948,467	+		Ga0059261_3847	0.67	-1.3
3,948,468	-		Ga0059261_3847	0.67	-0.1
3,948,622	+		Ga0059261_3847	0.75	-0.5
3,948,623	-		Ga0059261_3847	0.75	-0.6
3,948,694	+		Ga0059261_3847	0.79	+3.0
3,948,704	-		Ga0059261_3847	0.80	-1.1
3,948,817	+		Ga0059261_3847	0.85	-0.5
3,948,818	-		Ga0059261_3847	0.85	-1.4
3,948,836	-		Ga0059261_3847	0.86	+0.5
3,948,942	+				+0.9
3,949,039	+				-0.1
3,949,039	+				-0.4
3,949,039	+				-2.1
3,949,039	+				-0.6
3,949,039	+				-0.3
3,949,040	-				-0.2
3,949,040	-				-0.8
3,949,137	+				-1.1
3,949,138	-				+3.6
3,949,138	-				-1.1
3,949,138	-				-1.4
3,949,138	-				-1.1
3,949,138	-				+4.3
3,949,286	+		Ga0059261_3848	0.11	+0.2
3,949,286	+		Ga0059261_3848	0.11	+1.6
3,949,287	-		Ga0059261_3848	0.11	+0.6
3,949,287	-		Ga0059261_3848	0.11	+1.2
3,949,391	+		Ga0059261_3848	0.18	-0.1
3,949,391	+		Ga0059261_3848	0.18	+0.6
3,949,391	+		Ga0059261_3848	0.18	-1.2
3,949,391	+		Ga0059261_3848	0.18	+0.8
3,949,391	+		Ga0059261_3848	0.18	+0.5
3,949,391	+		Ga0059261_3848	0.18	+1.0
3,949,391	+		Ga0059261_3848	0.18	-2.6
3,949,392	-		Ga0059261_3848	0.18	-0.9
3,949,392	-		Ga0059261_3848	0.18	+0.6
3,949,392	-		Ga0059261_3848	0.18	+0.8
3,949,392	-				+1.2
3,949,392	-		Ga0059261_3848	0.18	-0.6
3,949,392	-		Ga0059261_3848	0.18	+2.1
3,949,392	-		Ga0059261_3848	0.18	-1.2
3,949,392	-		Ga0059261_3848	0.18	+0.1
3,949,392	-		Ga0059261_3848	0.18	-0.4
3,949,392	-		Ga0059261_3848	0.18	-1.4
3,949,392	-		Ga0059261_3848	0.18	-0.3
3,949,392	-		Ga0059261_3848	0.18	-1.1
3,949,392	-		Ga0059261_3848	0.18	-0.3
3,949,392	-		Ga0059261_3848	0.18	+0.6
3,949,392	-		Ga0059261_3848	0.18	+2.7
3,949,392	-		Ga0059261_3848	0.18	+0.4
3,949,448	+		Ga0059261_3848	0.22	-1.1
3,949,448	+		Ga0059261_3848	0.22	-0.2
3,949,448	+		Ga0059261_3848	0.22	+1.4
3,949,448	+		Ga0059261_3848	0.22	+2.6
3,949,448	+		Ga0059261_3848	0.22	-0.3
3,949,449	-		Ga0059261_3848	0.22	-0.4
3,949,576	+				+1.2
3,949,576	+		Ga0059261_3848	0.30	-1.8
3,949,576	+		Ga0059261_3848	0.30	-1.0
3,949,576	+		Ga0059261_3848	0.30	-1.1
3,949,576	+		Ga0059261_3848	0.30	+0.6
3,949,577	-		Ga0059261_3848	0.30	-1.4
3,949,610	+		Ga0059261_3848	0.33	-2.6
3,949,610	+		Ga0059261_3848	0.33	+1.2
3,949,610	+		Ga0059261_3848	0.33	-0.2
3,949,610	+		Ga0059261_3848	0.33	-0.5
3,949,610	+		Ga0059261_3848	0.33	+1.3
3,949,610	+		Ga0059261_3848	0.33	+0.5
3,949,611	-		Ga0059261_3848	0.33	+0.8
3,949,611	-		Ga0059261_3848	0.33	+0.1
3,949,611	-		Ga0059261_3848	0.33	+0.2
3,949,611	-		Ga0059261_3848	0.33	+1.0
3,949,611	-		Ga0059261_3848	0.33	-1.2
3,949,619	+		Ga0059261_3848	0.33	-2.8
3,949,619	+		Ga0059261_3848	0.33	+2.8
3,949,631	+		Ga0059261_3848	0.34	+0.7
3,949,631	+		Ga0059261_3848	0.34	-0.3
3,949,632	-		Ga0059261_3848	0.34	-2.2
3,949,680	+		Ga0059261_3848	0.37	-2.2
3,949,680	+		Ga0059261_3848	0.37	-0.6
3,949,681	-		Ga0059261_3848	0.37	-1.7
3,949,812	-		Ga0059261_3848	0.46	+1.9
3,949,812	-		Ga0059261_3848	0.46	-1.2
3,949,889	+		Ga0059261_3848	0.51	+0.6
3,949,889	+		Ga0059261_3848	0.51	-0.9
3,949,890	-		Ga0059261_3848	0.51	+0.6
3,949,890	-		Ga0059261_3848	0.51	+2.1
3,949,890	-		Ga0059261_3848	0.51	+0.0
3,949,891	+		Ga0059261_3848	0.51	+0.8
3,949,891	+		Ga0059261_3848	0.51	+0.0
3,949,892	-		Ga0059261_3848	0.51	-0.8
3,949,892	-		Ga0059261_3848	0.51	-0.5
3,949,892	-		Ga0059261_3848	0.51	+2.4
3,949,892	-		Ga0059261_3848	0.51	-0.2
3,949,967	+		Ga0059261_3848	0.56	-2.2
3,949,967	+		Ga0059261_3848	0.56	-0.3
3,949,968	-		Ga0059261_3848	0.56	-0.4
3,949,968	-		Ga0059261_3848	0.56	+1.3
3,949,968	-		Ga0059261_3848	0.56	+0.0
3,949,979	+		Ga0059261_3848	0.57	+2.1
3,949,979	+		Ga0059261_3848	0.57	-0.8
3,949,980	-		Ga0059261_3848	0.57	+0.5
3,949,980	-		Ga0059261_3848	0.57	-0.0
3,949,980	-		Ga0059261_3848	0.57	+0.2
3,949,980	-		Ga0059261_3848	0.57	-0.2
3,949,980	-		Ga0059261_3848	0.57	-3.1
3,949,980	-		Ga0059261_3848	0.57	-2.6
3,949,980	-		Ga0059261_3848	0.57	-0.7
3,949,981	+		Ga0059261_3848	0.57	-0.2