Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3704

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,818,007	+				+0.4
3,818,007	+				-2.0
3,818,008	-				+0.4
3,818,408	+		Ga0059261_3703	0.54	+1.0
3,818,408	+		Ga0059261_3703	0.54	+7.8
3,818,409	-		Ga0059261_3703	0.55	+0.2
3,818,409	-		Ga0059261_3703	0.55	-1.6
3,818,409	-		Ga0059261_3703	0.55	-1.4
3,818,656	+		Ga0059261_3703	0.86	-0.5
3,818,656	+		Ga0059261_3703	0.86	+0.7
3,818,656	+		Ga0059261_3703	0.86	+1.1
3,818,656	+		Ga0059261_3703	0.86	-1.6
3,818,656	+		Ga0059261_3703	0.86	+0.4
3,818,657	-		Ga0059261_3703	0.86	+0.2
3,818,657	-		Ga0059261_3703	0.86	+1.1
3,818,720	+				+2.4
3,818,720	+				-0.9
3,818,720	+				-0.7
3,818,720	+				-1.1
3,818,721	-				-2.2
3,818,721	-				-0.5
3,818,721	-				-1.3
3,818,721	-				+1.7
3,818,721	-				-1.5
3,818,721	-				-0.8
3,818,721	-				+2.4
3,818,721	-				-0.2
3,818,721	-				+2.7
3,818,721	-				+0.0
3,818,721	-				-0.3
3,818,721	-				+0.7
3,818,726	+				-0.3
3,818,726	+				+2.5
3,818,726	+				-0.0
3,818,726	+				-0.4
3,818,726	+				-1.5
3,818,727	-				-0.7
3,818,727	-				+1.6
3,818,727	-				-0.9
3,818,727	-				-0.6
3,818,727	-				-0.7
3,818,727	-				-2.0
3,818,727	-				+0.3
3,818,727	-				-0.4
3,818,750	+				-0.1
3,818,750	+				-0.7
3,818,750	+				+1.3
3,818,750	+				+1.6
3,818,807	+				-0.3
3,818,807	+				+0.3
3,818,807	+				-0.3
3,818,808	-				-3.1
3,818,808	-				-0.1
3,818,808	-				-0.3
3,818,818	+				-0.9
3,818,819	-				+0.6
3,819,005	+				-2.0
3,819,006	+				-0.7
3,819,006	+				+3.4
3,819,006	+				+1.6
3,819,006	+				+0.1
3,819,006	+				-2.2
3,819,006	+				+0.2
3,819,006	+				-0.9
3,819,006	+				+0.5
3,819,006	+				+3.8
3,819,006	+				-1.5
3,819,007	-				+0.4
3,819,007	-				-0.7
3,819,007	-				+1.3
3,819,007	-				-0.3
3,819,007	-				+1.6
3,819,007	-				-1.8
3,819,007	-				-0.9
3,819,007	-				-2.7
3,819,007	-				-0.1
3,819,007	-				-0.0
3,819,007	-				-1.8
3,819,007	-				+0.2
3,819,007	-				-0.2
3,819,007	-				+2.9
3,819,007	-				+0.3
3,819,007	-				-1.9
3,819,008	+				+2.2
3,819,008	+				+2.4
3,819,008	+				-0.4
3,819,008	+				+0.6
3,819,008	+				-0.5
3,819,008	+				+1.3
3,819,008	+				+1.3
3,819,008	+				+1.2
3,819,008	+				-1.2
3,819,009	-				-1.0
3,819,009	-				+0.3
3,819,575	+		Ga0059261_3704	0.33	-1.8
3,819,575	+		Ga0059261_3704	0.33	-0.6
3,819,575	+		Ga0059261_3704	0.33	-0.0
3,819,575	+		Ga0059261_3704	0.33	+1.9
3,819,576	-		Ga0059261_3704	0.33	+0.5
3,819,576	-		Ga0059261_3704	0.33	-2.4
3,819,576	-		Ga0059261_3704	0.33	-0.0
3,819,576	-		Ga0059261_3704	0.33	-1.0
3,819,619	-		Ga0059261_3704	0.35	+1.5
3,819,620	+		Ga0059261_3704	0.35	+1.0
3,819,620	+		Ga0059261_3704	0.35	-0.0
3,819,620	+		Ga0059261_3704	0.35	+1.4
3,819,621	-		Ga0059261_3704	0.35	-1.1
3,819,621	-		Ga0059261_3704	0.35	-1.8
3,819,645	+		Ga0059261_3704	0.37	+0.7
3,819,645	+		Ga0059261_3704	0.37	+0.9
3,819,646	-		Ga0059261_3704	0.37	-1.1
3,819,646	-		Ga0059261_3704	0.37	-0.7
3,819,756	+		Ga0059261_3704	0.42	+3.3
3,819,756	+		Ga0059261_3704	0.42	+1.8
3,819,756	+		Ga0059261_3704	0.42	-2.3
3,819,757	-		Ga0059261_3704	0.42	-0.4
3,819,757	-		Ga0059261_3704	0.42	-0.6
3,819,757	-		Ga0059261_3704	0.42	-0.2
3,819,787	-		Ga0059261_3704	0.43	+0.7
3,819,888	+		Ga0059261_3704	0.48	-0.6
3,819,888	+		Ga0059261_3704	0.48	-0.3
3,819,888	+		Ga0059261_3704	0.48	-0.6
3,819,888	+		Ga0059261_3704	0.48	+0.5
3,819,888	+		Ga0059261_3704	0.48	+1.0
3,819,889	-		Ga0059261_3704	0.48	-0.5
3,819,889	-		Ga0059261_3704	0.48	-0.7
3,819,889	-		Ga0059261_3704	0.48	-0.4
3,819,889	-		Ga0059261_3704	0.48	-0.4
3,819,889	-		Ga0059261_3704	0.48	-0.7
3,819,889	-		Ga0059261_3704	0.48	-3.3
3,819,889	-				+1.3
3,820,261	-		Ga0059261_3704	0.65	-0.6
3,820,303	-		Ga0059261_3704	0.67	+2.8
3,820,318	-		Ga0059261_3704	0.68	-2.3
3,820,415	+		Ga0059261_3704	0.72	+0.5
3,820,415	+		Ga0059261_3704	0.72	-0.4
3,820,415	+		Ga0059261_3704	0.72	-0.0
3,820,415	+		Ga0059261_3704	0.72	+1.3
3,820,415	+		Ga0059261_3704	0.72	-0.9
3,820,416	-		Ga0059261_3704	0.72	-0.0
3,820,416	-		Ga0059261_3704	0.72	-1.4
3,820,416	-		Ga0059261_3704	0.72	-2.0
3,820,524	+		Ga0059261_3704	0.77	-0.3
3,820,524	+		Ga0059261_3704	0.77	+1.8
3,820,524	+		Ga0059261_3704	0.77	+1.4
3,820,525	-		Ga0059261_3704	0.77	+2.4
3,820,525	-		Ga0059261_3704	0.77	-0.3
3,820,525	-		Ga0059261_3704	0.77	+0.5
3,820,530	+		Ga0059261_3704	0.78	+1.0
3,820,530	+		Ga0059261_3704	0.78	-0.6
3,820,530	+		Ga0059261_3704	0.78	-0.3
3,820,530	+		Ga0059261_3704	0.78	-0.1
3,820,531	-		Ga0059261_3704	0.78	+0.1
3,820,531	-		Ga0059261_3704	0.78	-0.5
3,820,540	-		Ga0059261_3704	0.78	-0.3
3,820,671	+		Ga0059261_3704	0.84	-0.2
3,820,671	+		Ga0059261_3704	0.84	+1.4
3,820,671	+		Ga0059261_3704	0.84	-0.2
3,820,671	+		Ga0059261_3704	0.84	-0.6
3,820,672	-		Ga0059261_3704	0.84	+0.5
3,820,672	-		Ga0059261_3704	0.84	-2.2
3,820,672	-		Ga0059261_3704	0.84	+0.3
3,820,672	-		Ga0059261_3704	0.84	-2.6
3,820,672	-		Ga0059261_3704	0.84	+1.6
3,820,672	-		Ga0059261_3704	0.84	+1.5
3,820,672	-		Ga0059261_3704	0.84	-1.0
3,820,878	+				+0.6
3,820,885	+				-1.3
3,820,886	-				-0.9
3,820,886	-				+0.2
3,820,886	-				-2.1
3,821,007	+				-2.5
3,821,008	-				-1.2
3,821,008	-				-1.2
3,821,008	-				-2.6
3,821,008	-				+0.2
3,821,161	+				-0.0
3,821,161	+		Ga0059261_3705	0.16	+1.4
3,821,161	+		Ga0059261_3705	0.16	+1.3
3,821,161	+		Ga0059261_3705	0.16	-0.4
3,821,161	+		Ga0059261_3705	0.16	+1.3
3,821,162	-		Ga0059261_3705	0.16	-0.9
3,821,162	-		Ga0059261_3705	0.16	-2.0
3,821,162	-		Ga0059261_3705	0.16	-0.7
3,821,162	-		Ga0059261_3705	0.16	-1.4
3,821,162	-		Ga0059261_3705	0.16	-1.4
3,821,314	+		Ga0059261_3705	0.39	-0.7
3,821,314	+		Ga0059261_3705	0.39	-1.8
3,821,314	+		Ga0059261_3705	0.39	-0.5
3,821,381	+		Ga0059261_3705	0.49	-0.1
3,821,381	+		Ga0059261_3705	0.49	+2.6
3,821,382	-		Ga0059261_3705	0.49	-0.0
3,821,382	-		Ga0059261_3705	0.49	+1.4
3,821,491	+		Ga0059261_3705	0.65	-1.5
3,821,491	+		Ga0059261_3705	0.65	+2.7
3,821,491	+		Ga0059261_3705	0.65	-0.9
3,821,491	+		Ga0059261_3705	0.65	-0.7
3,821,492	-		Ga0059261_3705	0.65	+0.8
3,821,572	+		Ga0059261_3705	0.77	+3.5
3,821,573	-		Ga0059261_3705	0.77	-0.9
3,821,573	-		Ga0059261_3705	0.77	+0.1
3,821,861	+		Ga0059261_3706	0.36	+1.2
3,821,861	+		Ga0059261_3706	0.36	-1.2
3,821,861	+		Ga0059261_3706	0.36	-2.7
3,821,861	+		Ga0059261_3706	0.36	-0.2
3,821,861	+		Ga0059261_3706	0.36	-1.0
3,821,862	-		Ga0059261_3706	0.36	+0.3
3,821,862	-		Ga0059261_3706	0.36	-1.2
3,821,862	-		Ga0059261_3706	0.36	-1.7
3,821,862	-		Ga0059261_3706	0.36	-0.3