Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0841

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0840 and Ga0059261_0841 overlap by 1 nucleotidesGa0059261_0841 and Ga0059261_0842 are separated by 30 nucleotides Ga0059261_0840: Ga0059261_0840 - Acyl-CoA dehydrogenases, at 880,429 to 881,556 _0840 Ga0059261_0841: Ga0059261_0841 - Acyl-CoA thioesterase, at 881,556 to 882,443 _0841 Ga0059261_0842: Ga0059261_0842 - TonB family C-terminal domain, at 882,474 to 883,580 _0842 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strandat 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.470 kb on + strandat 881.470 kb on + strandat 881.470 kb on + strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.551 kb on + strandat 881.649 kb on + strand, within Ga0059261_0841at 881.649 kb on + strand, within Ga0059261_0841at 881.650 kb on - strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.809 kb on - strand, within Ga0059261_0841at 882.117 kb on + strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strandat 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.631 kb on - strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.735 kb on + strand, within Ga0059261_0842at 882.736 kb on - strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strandat 882.926 kb on + strand, within Ga0059261_0842at 882.926 kb on + strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.303 kb on + strand, within Ga0059261_0842at 883.304 kb on - strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strandat 883.399 kb on + strandat 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.403 kb on + strand, within Ga0059261_0842

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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881,203 + Ga0059261_0840 0.69 +1.8
881,203 + Ga0059261_0840 0.69 -0.4
881,203 + Ga0059261_0840 0.69 -0.4
881,203 + Ga0059261_0840 0.69 +2.8
881,204 - Ga0059261_0840 0.69 +1.0
881,204 - Ga0059261_0840 0.69 -1.8
881,278 + Ga0059261_0840 0.75 -0.8
881,278 + Ga0059261_0840 0.75 +0.3
881,279 - Ga0059261_0840 0.75 -1.4
881,279 - +3.3
881,279 - Ga0059261_0840 0.75 +2.1
881,279 - Ga0059261_0840 0.75 -2.3
881,279 - Ga0059261_0840 0.75 +0.7
881,279 - Ga0059261_0840 0.75 -0.5
881,470 + -2.4
881,470 + -1.1
881,470 + -0.1
881,471 - -0.8
881,471 - -0.3
881,471 - -1.1
881,471 - -0.2
881,471 - +0.0
881,471 - -1.9
881,551 + -2.2
881,649 + Ga0059261_0841 0.10 -1.1
881,649 + Ga0059261_0841 0.10 +0.2
881,650 - Ga0059261_0841 0.11 -1.7
881,769 + Ga0059261_0841 0.24 +0.3
881,769 + Ga0059261_0841 0.24 -0.5
881,769 + Ga0059261_0841 0.24 -0.5
881,769 + Ga0059261_0841 0.24 -0.3
881,770 - Ga0059261_0841 0.24 +0.5
881,770 - Ga0059261_0841 0.24 +0.0
881,770 - Ga0059261_0841 0.24 +1.6
881,808 + Ga0059261_0841 0.28 +0.4
881,808 + Ga0059261_0841 0.28 +0.2
881,808 + Ga0059261_0841 0.28 +1.5
881,809 - Ga0059261_0841 0.28 -1.5
882,117 + Ga0059261_0841 0.63 -0.3
882,118 - Ga0059261_0841 0.63 -1.3
882,118 - Ga0059261_0841 0.63 -1.7
882,118 - Ga0059261_0841 0.63 +0.1
882,118 - +1.3
882,183 + Ga0059261_0841 0.71 +0.5
882,183 + Ga0059261_0841 0.71 -0.2
882,183 + Ga0059261_0841 0.71 +0.7
882,184 - Ga0059261_0841 0.71 -2.5
882,184 - Ga0059261_0841 0.71 +0.1
882,184 - Ga0059261_0841 0.71 +1.0
882,184 - Ga0059261_0841 0.71 +0.4
882,321 + Ga0059261_0841 0.86 -1.3
882,321 + Ga0059261_0841 0.86 +1.1
882,322 - Ga0059261_0841 0.86 -3.3
882,322 - Ga0059261_0841 0.86 -0.1
882,322 - Ga0059261_0841 0.86 +3.1
882,630 + Ga0059261_0842 0.14 -0.5
882,630 + Ga0059261_0842 0.14 -1.5
882,630 + Ga0059261_0842 0.14 +0.0
882,630 + Ga0059261_0842 0.14 -2.8
882,630 + Ga0059261_0842 0.14 +3.1
882,631 - Ga0059261_0842 0.14 -0.7
882,670 + Ga0059261_0842 0.18 +0.7
882,670 + Ga0059261_0842 0.18 +1.3
882,670 + Ga0059261_0842 0.18 +0.5
882,670 + Ga0059261_0842 0.18 +2.1
882,670 + Ga0059261_0842 0.18 -2.3
882,671 - Ga0059261_0842 0.18 -0.3
882,671 - Ga0059261_0842 0.18 -1.8
882,671 - Ga0059261_0842 0.18 +2.3
882,671 - Ga0059261_0842 0.18 -2.0
882,735 + Ga0059261_0842 0.24 +0.4
882,736 - Ga0059261_0842 0.24 -2.2
882,844 + Ga0059261_0842 0.33 -1.3
882,844 + Ga0059261_0842 0.33 +0.3
882,844 + Ga0059261_0842 0.33 +0.2
882,844 + Ga0059261_0842 0.33 +0.9
882,845 - Ga0059261_0842 0.34 +0.7
882,845 - Ga0059261_0842 0.34 -1.2
882,845 - Ga0059261_0842 0.34 -1.7
882,850 + Ga0059261_0842 0.34 -1.6
882,850 + Ga0059261_0842 0.34 -1.4
882,850 + Ga0059261_0842 0.34 +0.0
882,850 + Ga0059261_0842 0.34 +1.9
882,850 + Ga0059261_0842 0.34 -1.3
882,850 + Ga0059261_0842 0.34 -0.4
882,851 - Ga0059261_0842 0.34 +0.2
882,851 - Ga0059261_0842 0.34 +1.3
882,851 - Ga0059261_0842 0.34 +0.3
882,851 - Ga0059261_0842 0.34 -1.3
882,851 - +1.3
882,926 + Ga0059261_0842 0.41 -1.5
882,926 + Ga0059261_0842 0.41 +0.3
882,927 - Ga0059261_0842 0.41 +0.1
882,927 - Ga0059261_0842 0.41 +2.6
882,927 - Ga0059261_0842 0.41 -1.4
882,927 - Ga0059261_0842 0.41 -1.2
883,000 + Ga0059261_0842 0.48 -0.2
883,000 + Ga0059261_0842 0.48 -1.1
883,000 + Ga0059261_0842 0.48 +3.3
883,000 + Ga0059261_0842 0.48 -0.1
883,000 + Ga0059261_0842 0.48 -1.7
883,001 - Ga0059261_0842 0.48 +1.1
883,001 - Ga0059261_0842 0.48 -0.0
883,001 - Ga0059261_0842 0.48 -0.1
883,001 - Ga0059261_0842 0.48 -0.5
883,001 - Ga0059261_0842 0.48 -0.3
883,303 + Ga0059261_0842 0.75 -0.9
883,304 - Ga0059261_0842 0.75 -0.3
883,399 + Ga0059261_0842 0.84 +0.9
883,399 + Ga0059261_0842 0.84 -0.1
883,399 + Ga0059261_0842 0.84 -1.9
883,399 + Ga0059261_0842 0.84 +2.9
883,399 + Ga0059261_0842 0.84 +0.9
883,399 + Ga0059261_0842 0.84 -0.3
883,399 + Ga0059261_0842 0.84 +0.5
883,399 + +3.0
883,399 + +0.3
883,399 + Ga0059261_0842 0.84 +0.4
883,399 + Ga0059261_0842 0.84 +0.2
883,399 + Ga0059261_0842 0.84 -1.2
883,400 - Ga0059261_0842 0.84 -1.1
883,400 - Ga0059261_0842 0.84 +1.7
883,400 - Ga0059261_0842 0.84 +1.8
883,400 - Ga0059261_0842 0.84 -0.7
883,400 - Ga0059261_0842 0.84 +0.4
883,400 - Ga0059261_0842 0.84 -1.3
883,400 - Ga0059261_0842 0.84 -0.5
883,403 + Ga0059261_0842 0.84 +0.5

Or see this region's nucleotide sequence