Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0818

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0817 and Ga0059261_0818 are separated by 184 nucleotidesGa0059261_0818 and Ga0059261_0819 are separated by 78 nucleotides Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037 _0817 Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109 _0818 Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216 _0819 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 859.417 kb on + strand, within Ga0059261_0817at 859.418 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.633 kb on + strand, within Ga0059261_0817at 859.634 kb on - strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 860.035 kb on + strandat 860.036 kb on - strandat 860.124 kb on + strandat 860.125 kb on - strandat 860.336 kb on + strand, within Ga0059261_0818at 860.336 kb on + strand, within Ga0059261_0818at 860.337 kb on - strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.474 kb on + strand, within Ga0059261_0818at 860.723 kb on + strandat 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 861.174 kb on + strandat 861.189 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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859,417 + Ga0059261_0817 0.66 -0.7
859,418 - Ga0059261_0817 0.66 +1.5
859,571 - Ga0059261_0817 0.74 -1.4
859,571 - Ga0059261_0817 0.74 -2.1
859,633 + Ga0059261_0817 0.78 -1.3
859,634 - Ga0059261_0817 0.78 -1.2
859,711 + Ga0059261_0817 0.82 -1.0
859,711 + Ga0059261_0817 0.82 -1.9
859,711 + Ga0059261_0817 0.82 +0.9
859,712 - Ga0059261_0817 0.82 -0.1
859,712 - Ga0059261_0817 0.82 +0.3
859,771 + Ga0059261_0817 0.85 -0.7
859,771 + Ga0059261_0817 0.85 +0.9
859,771 + Ga0059261_0817 0.85 -0.3
859,771 + Ga0059261_0817 0.85 +0.5
859,772 - Ga0059261_0817 0.85 -2.7
859,772 - Ga0059261_0817 0.85 -2.2
859,772 - Ga0059261_0817 0.85 -1.1
860,035 + -2.4
860,036 - +1.5
860,124 + +4.0
860,125 - -1.1
860,336 + Ga0059261_0818 0.13 -0.1
860,336 + Ga0059261_0818 0.13 -0.7
860,337 - Ga0059261_0818 0.13 +1.0
860,389 + Ga0059261_0818 0.19 +0.1
860,389 + Ga0059261_0818 0.19 +0.0
860,389 + Ga0059261_0818 0.19 -1.2
860,389 + Ga0059261_0818 0.19 +2.5
860,390 - Ga0059261_0818 0.19 -0.7
860,390 - Ga0059261_0818 0.19 +1.0
860,390 - Ga0059261_0818 0.19 -0.0
860,474 + Ga0059261_0818 0.28 +1.1
860,723 + +0.7
860,723 + Ga0059261_0818 0.56 -0.8
860,723 + Ga0059261_0818 0.56 +0.7
860,723 + Ga0059261_0818 0.56 -1.2
860,723 + Ga0059261_0818 0.56 +1.6
860,724 - Ga0059261_0818 0.57 +1.6
860,724 - Ga0059261_0818 0.57 -1.7
860,724 - Ga0059261_0818 0.57 -1.4
860,724 - Ga0059261_0818 0.57 +0.3
860,724 - Ga0059261_0818 0.57 -0.4
860,724 - Ga0059261_0818 0.57 +0.0
860,724 - Ga0059261_0818 0.57 +4.1
860,724 - Ga0059261_0818 0.57 -3.2
860,724 - Ga0059261_0818 0.57 -1.7
860,724 - Ga0059261_0818 0.57 +2.2
860,724 - Ga0059261_0818 0.57 +3.2
860,724 - Ga0059261_0818 0.57 -1.3
860,725 + Ga0059261_0818 0.57 +0.3
860,725 + Ga0059261_0818 0.57 -2.4
860,725 + Ga0059261_0818 0.57 -2.6
860,725 + Ga0059261_0818 0.57 +0.8
860,725 + Ga0059261_0818 0.57 +0.3
860,726 - Ga0059261_0818 0.57 +1.5
860,726 - Ga0059261_0818 0.57 +0.5
860,859 - Ga0059261_0818 0.72 -0.4
860,859 - Ga0059261_0818 0.72 -2.0
860,861 - Ga0059261_0818 0.72 -1.7
860,861 - Ga0059261_0818 0.72 +0.8
860,930 + Ga0059261_0818 0.80 -0.6
860,930 + Ga0059261_0818 0.80 -0.4
860,931 - Ga0059261_0818 0.80 -0.5
860,931 - Ga0059261_0818 0.80 +0.9
861,174 + +0.3
861,189 + +0.6

Or see this region's nucleotide sequence