Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0397 and Ga0059261_0398 overlap by 13 nucleotides Ga0059261_0398 and Ga0059261_0399 overlap by 8 nucleotides Ga0059261_0399 and Ga0059261_0400 are separated by 199 nucleotides
Ga0059261_0397: Ga0059261_0397 - Transglycosylase SLT domain, at 383,042 to 383,635
_0397
Ga0059261_0398: Ga0059261_0398 - Type IV secretory pathway, protease TraF, at 383,623 to 384,183
_0398
Ga0059261_0399: Ga0059261_0399 - Helix-turn-helix domain, at 384,176 to 384,415
_0399
Ga0059261_0400: Ga0059261_0400 - hypothetical protein, at 384,615 to 384,809
_0400
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.043 kb on + strand at 383.044 kb on - strand at 383.061 kb on - strand at 383.061 kb on - strand at 383.193 kb on + strand, within Ga0059261_0397 at 383.193 kb on + strand, within Ga0059261_0397 at 383.193 kb on + strand, within Ga0059261_0397 at 383.194 kb on - strand, within Ga0059261_0397 at 383.194 kb on - strand, within Ga0059261_0397 at 383.194 kb on - strand, within Ga0059261_0397 at 383.244 kb on + strand, within Ga0059261_0397 at 383.245 kb on - strand, within Ga0059261_0397 at 383.264 kb on - strand, within Ga0059261_0397 at 383.301 kb on + strand, within Ga0059261_0397 at 383.301 kb on + strand, within Ga0059261_0397 at 383.301 kb on + strand at 383.301 kb on + strand, within Ga0059261_0397 at 383.301 kb on + strand, within Ga0059261_0397 at 383.302 kb on - strand, within Ga0059261_0397 at 383.302 kb on - strand, within Ga0059261_0397 at 383.302 kb on - strand, within Ga0059261_0397 at 383.302 kb on - strand, within Ga0059261_0397 at 383.302 kb on - strand, within Ga0059261_0397 at 383.316 kb on + strand, within Ga0059261_0397 at 383.316 kb on + strand, within Ga0059261_0397 at 383.316 kb on + strand, within Ga0059261_0397 at 383.317 kb on - strand, within Ga0059261_0397 at 383.335 kb on + strand, within Ga0059261_0397 at 383.336 kb on - strand, within Ga0059261_0397 at 383.425 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.545 kb on + strand, within Ga0059261_0397 at 383.546 kb on - strand, within Ga0059261_0397 at 383.546 kb on - strand, within Ga0059261_0397 at 383.546 kb on - strand, within Ga0059261_0397 at 383.546 kb on - strand, within Ga0059261_0397 at 383.547 kb on + strand, within Ga0059261_0397 at 383.547 kb on + strand, within Ga0059261_0397 at 383.547 kb on + strand, within Ga0059261_0397 at 383.547 kb on + strand, within Ga0059261_0397 at 383.547 kb on + strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.548 kb on - strand, within Ga0059261_0397 at 383.636 kb on - strand at 383.684 kb on + strand, within Ga0059261_0398 at 383.685 kb on - strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.748 kb on + strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.749 kb on - strand, within Ga0059261_0398 at 383.890 kb on + strand at 383.890 kb on + strand, within Ga0059261_0398 at 383.906 kb on + strand, within Ga0059261_0398 at 383.906 kb on + strand, within Ga0059261_0398 at 383.907 kb on - strand, within Ga0059261_0398 at 383.907 kb on - strand, within Ga0059261_0398 at 383.907 kb on - strand, within Ga0059261_0398 at 383.907 kb on - strand, within Ga0059261_0398 at 383.961 kb on + strand at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand, within Ga0059261_0398 at 383.961 kb on + strand at 383.962 kb on - strand, within Ga0059261_0398 at 383.962 kb on - strand, within Ga0059261_0398 at 383.962 kb on - strand, within Ga0059261_0398 at 383.962 kb on - strand, within Ga0059261_0398 at 383.982 kb on + strand, within Ga0059261_0398 at 384.232 kb on + strand, within Ga0059261_0399 at 384.233 kb on - strand, within Ga0059261_0399 at 384.233 kb on - strand, within Ga0059261_0399 at 384.237 kb on + strand, within Ga0059261_0399 at 384.237 kb on + strand, within Ga0059261_0399 at 384.238 kb on - strand, within Ga0059261_0399 at 384.286 kb on + strand, within Ga0059261_0399 at 384.286 kb on + strand, within Ga0059261_0399 at 384.286 kb on + strand, within Ga0059261_0399 at 384.287 kb on - strand, within Ga0059261_0399 at 384.287 kb on - strand, within Ga0059261_0399 at 384.287 kb on - strand, within Ga0059261_0399 at 384.291 kb on + strand, within Ga0059261_0399 at 384.292 kb on - strand, within Ga0059261_0399 at 384.292 kb on - strand, within Ga0059261_0399 at 384.292 kb on - strand, within Ga0059261_0399 at 384.314 kb on + strand, within Ga0059261_0399 at 384.314 kb on + strand, within Ga0059261_0399 at 384.315 kb on - strand, within Ga0059261_0399 at 384.315 kb on - strand, within Ga0059261_0399 at 384.315 kb on - strand, within Ga0059261_0399 at 384.324 kb on + strand, within Ga0059261_0399 at 384.324 kb on + strand at 384.325 kb on - strand, within Ga0059261_0399 at 384.325 kb on - strand, within Ga0059261_0399 at 384.397 kb on + strand at 384.509 kb on + strand at 384.510 kb on - strand at 384.550 kb on + strand at 384.554 kb on + strand at 384.555 kb on - strand at 384.561 kb on + strand at 384.657 kb on + strand, within Ga0059261_0400 at 384.657 kb on + strand, within Ga0059261_0400 at 384.658 kb on - strand, within Ga0059261_0400 at 384.658 kb on - strand, within Ga0059261_0400 at 384.658 kb on - strand, within Ga0059261_0400 at 384.658 kb on - strand, within Ga0059261_0400 at 384.658 kb on - strand, within Ga0059261_0400 at 384.669 kb on + strand, within Ga0059261_0400 at 384.717 kb on + strand, within Ga0059261_0400 at 384.732 kb on + strand, within Ga0059261_0400 at 384.799 kb on + strand at 384.799 kb on + strand at 384.799 kb on + strand at 384.799 kb on + strand at 384.799 kb on + strand at 384.799 kb on + strand at 384.800 kb on - strand at 384.800 kb on - strand at 384.800 kb on - strand at 384.915 kb on + strand at 384.915 kb on + strand at 384.915 kb on + strand at 384.915 kb on + strand at 384.916 kb on - strand at 384.916 kb on - strand at 384.916 kb on - strand at 384.916 kb on - strand at 384.916 kb on - strand at 384.916 kb on - strand at 384.936 kb on + strand at 384.936 kb on + strand at 384.936 kb on + strand at 384.936 kb on + strand at 384.937 kb on - strand at 384.937 kb on - strand at 384.937 kb on - strand at 384.937 kb on - strand at 384.937 kb on - strand at 384.937 kb on - strand at 384.949 kb on - strand at 385.003 kb on + strand at 385.004 kb on - strand at 385.004 kb on - strand at 385.008 kb on + strand at 385.009 kb on - strand at 385.031 kb on + strand at 385.031 kb on + strand at 385.078 kb on + strand at 385.078 kb on + strand at 385.079 kb on - strand at 385.079 kb on - strand at 385.079 kb on - strand at 385.079 kb on - strand at 385.116 kb on + strand at 385.116 kb on + strand at 385.116 kb on + strand at 385.116 kb on + strand at 385.116 kb on + strand at 385.117 kb on - strand at 385.117 kb on - strand at 385.117 kb on - strand at 385.117 kb on - strand at 385.117 kb on - strand at 385.122 kb on + strand at 385.122 kb on + strand at 385.122 kb on + strand at 385.122 kb on + strand at 385.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 383,043 + -2.4 383,044 - -1.1 383,061 - -2.1 383,061 - -0.7 383,193 + Ga0059261_0397 0.25 +0.4 383,193 + Ga0059261_0397 0.25 +1.2 383,193 + Ga0059261_0397 0.25 -0.8 383,194 - Ga0059261_0397 0.26 +2.2 383,194 - Ga0059261_0397 0.26 +0.8 383,194 - Ga0059261_0397 0.26 -1.2 383,244 + Ga0059261_0397 0.34 +0.6 383,245 - Ga0059261_0397 0.34 -0.9 383,264 - Ga0059261_0397 0.37 -0.9 383,301 + Ga0059261_0397 0.44 -1.1 383,301 + Ga0059261_0397 0.44 +0.8 383,301 + +0.7 383,301 + Ga0059261_0397 0.44 +0.6 383,301 + Ga0059261_0397 0.44 -0.4 383,302 - Ga0059261_0397 0.44 +1.1 383,302 - Ga0059261_0397 0.44 -1.1 383,302 - Ga0059261_0397 0.44 +0.5 383,302 - Ga0059261_0397 0.44 +1.7 383,302 - Ga0059261_0397 0.44 -0.9 383,316 + Ga0059261_0397 0.46 -0.6 383,316 + Ga0059261_0397 0.46 +0.4 383,316 + Ga0059261_0397 0.46 -0.6 383,317 - Ga0059261_0397 0.46 +0.2 383,335 + Ga0059261_0397 0.49 +2.2 383,336 - Ga0059261_0397 0.49 +0.0 383,425 + Ga0059261_0397 0.64 +0.1 383,545 + Ga0059261_0397 0.85 -0.4 383,545 + Ga0059261_0397 0.85 +1.5 383,545 + Ga0059261_0397 0.85 -0.8 383,545 + Ga0059261_0397 0.85 -1.3 383,545 + Ga0059261_0397 0.85 -1.5 383,545 + Ga0059261_0397 0.85 +0.9 383,545 + Ga0059261_0397 0.85 -2.3 383,545 + Ga0059261_0397 0.85 -0.5 383,545 + Ga0059261_0397 0.85 -0.4 383,546 - Ga0059261_0397 0.85 +0.8 383,546 - Ga0059261_0397 0.85 +1.5 383,546 - Ga0059261_0397 0.85 -2.9 383,546 - Ga0059261_0397 0.85 +0.2 383,547 + Ga0059261_0397 0.85 -1.8 383,547 + Ga0059261_0397 0.85 -0.7 383,547 + Ga0059261_0397 0.85 +1.1 383,547 + Ga0059261_0397 0.85 +0.2 383,547 + Ga0059261_0397 0.85 +0.2 383,548 - Ga0059261_0397 0.85 +0.9 383,548 - Ga0059261_0397 0.85 -0.5 383,548 - Ga0059261_0397 0.85 +1.1 383,548 - Ga0059261_0397 0.85 +2.0 383,548 - Ga0059261_0397 0.85 -0.2 383,548 - Ga0059261_0397 0.85 -2.5 383,548 - Ga0059261_0397 0.85 -0.6 383,636 - +0.3 383,684 + Ga0059261_0398 0.11 -0.3 383,685 - Ga0059261_0398 0.11 -0.6 383,748 + Ga0059261_0398 0.22 +0.2 383,748 + Ga0059261_0398 0.22 +0.7 383,748 + Ga0059261_0398 0.22 -1.5 383,748 + Ga0059261_0398 0.22 -0.2 383,748 + Ga0059261_0398 0.22 +0.2 383,748 + Ga0059261_0398 0.22 -0.1 383,749 - Ga0059261_0398 0.22 -2.3 383,749 - Ga0059261_0398 0.22 +0.8 383,749 - Ga0059261_0398 0.22 +0.7 383,749 - Ga0059261_0398 0.22 +0.5 383,749 - Ga0059261_0398 0.22 -0.8 383,749 - Ga0059261_0398 0.22 -1.8 383,749 - Ga0059261_0398 0.22 +0.7 383,749 - Ga0059261_0398 0.22 +0.6 383,749 - Ga0059261_0398 0.22 +0.0 383,749 - Ga0059261_0398 0.22 +0.4 383,890 + +0.7 383,890 + Ga0059261_0398 0.48 -0.6 383,906 + Ga0059261_0398 0.50 -0.5 383,906 + Ga0059261_0398 0.50 -0.7 383,907 - Ga0059261_0398 0.51 +0.2 383,907 - Ga0059261_0398 0.51 +0.0 383,907 - Ga0059261_0398 0.51 +1.4 383,907 - Ga0059261_0398 0.51 +0.6 383,961 + +1.2 383,961 + Ga0059261_0398 0.60 +0.9 383,961 + Ga0059261_0398 0.60 +0.5 383,961 + Ga0059261_0398 0.60 -0.2 383,961 + Ga0059261_0398 0.60 +1.5 383,961 + Ga0059261_0398 0.60 -0.2 383,961 + Ga0059261_0398 0.60 +0.7 383,961 + +1.8 383,962 - Ga0059261_0398 0.60 -0.9 383,962 - Ga0059261_0398 0.60 -1.1 383,962 - Ga0059261_0398 0.60 -0.5 383,962 - Ga0059261_0398 0.60 -0.6 383,982 + Ga0059261_0398 0.64 +0.1 384,232 + Ga0059261_0399 0.23 +1.1 384,233 - Ga0059261_0399 0.24 +0.6 384,233 - Ga0059261_0399 0.24 -2.9 384,237 + Ga0059261_0399 0.25 -1.5 384,237 + Ga0059261_0399 0.25 -0.1 384,238 - Ga0059261_0399 0.26 +0.5 384,286 + Ga0059261_0399 0.46 +0.2 384,286 + Ga0059261_0399 0.46 +0.5 384,286 + Ga0059261_0399 0.46 -0.4 384,287 - Ga0059261_0399 0.46 -0.7 384,287 - Ga0059261_0399 0.46 +1.1 384,287 - Ga0059261_0399 0.46 +0.6 384,291 + Ga0059261_0399 0.48 +0.4 384,292 - Ga0059261_0399 0.48 +0.7 384,292 - Ga0059261_0399 0.48 -0.3 384,292 - Ga0059261_0399 0.48 -2.7 384,314 + Ga0059261_0399 0.57 -1.3 384,314 + Ga0059261_0399 0.57 +0.2 384,315 - Ga0059261_0399 0.58 +1.3 384,315 - Ga0059261_0399 0.58 -1.5 384,315 - Ga0059261_0399 0.58 -1.0 384,324 + Ga0059261_0399 0.62 -1.1 384,324 + +0.2 384,325 - Ga0059261_0399 0.62 -1.9 384,325 - Ga0059261_0399 0.62 -0.3 384,397 + -0.3 384,509 + -0.3 384,510 - -1.9 384,550 + -0.3 384,554 + -0.1 384,555 - +0.9 384,561 + -1.1 384,657 + Ga0059261_0400 0.22 -2.0 384,657 + Ga0059261_0400 0.22 +0.4 384,658 - Ga0059261_0400 0.22 -1.3 384,658 - Ga0059261_0400 0.22 -0.5 384,658 - Ga0059261_0400 0.22 -0.5 384,658 - Ga0059261_0400 0.22 +2.8 384,658 - Ga0059261_0400 0.22 -0.6 384,669 + Ga0059261_0400 0.28 -0.3 384,717 + Ga0059261_0400 0.52 +0.3 384,732 + Ga0059261_0400 0.60 -1.5 384,799 + -2.1 384,799 + +0.0 384,799 + +2.8 384,799 + +1.5 384,799 + -0.2 384,799 + +1.7 384,800 - -0.8 384,800 - -0.3 384,800 - -2.7 384,915 + +1.0 384,915 + -1.8 384,915 + +1.5 384,915 + -1.6 384,916 - +1.5 384,916 - +0.6 384,916 - +0.7 384,916 - +0.1 384,916 - +0.2 384,916 - -1.2 384,936 + +1.1 384,936 + -1.1 384,936 + +0.5 384,936 + +1.5 384,937 - +1.3 384,937 - +2.2 384,937 - -3.0 384,937 - +0.9 384,937 - -1.2 384,937 - -0.8 384,949 - +1.2 385,003 + -1.9 385,004 - -0.0 385,004 - -1.2 385,008 + -0.5 385,009 - -0.9 385,031 + +1.1 385,031 + -0.1 385,078 + -0.9 385,078 + -0.6 385,079 - +0.4 385,079 - -1.2 385,079 - +0.5 385,079 - -0.6 385,116 + -0.3 385,116 + +0.9 385,116 + -0.3 385,116 + -0.1 385,116 + +0.8 385,117 - +1.2 385,117 - +0.7 385,117 - -0.3 385,117 - -0.1 385,117 - +2.5 385,122 + +0.2 385,122 + +0.9 385,122 + -1.9 385,122 + -1.2 385,123 - +0.2
Or see this region's nucleotide sequence