Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0314

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0311 and Ga0059261_0312 are separated by 126 nucleotidesGa0059261_0312 and Ga0059261_0313 are separated by 7 nucleotidesGa0059261_0313 and Ga0059261_0314 are separated by 66 nucleotidesGa0059261_0314 and Ga0059261_0315 are separated by 71 nucleotidesGa0059261_0315 and Ga0059261_0316 overlap by 4 nucleotides Ga0059261_0311: Ga0059261_0311 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 293,569 to 294,429 _0311 Ga0059261_0312: Ga0059261_0312 - hypothetical protein, at 294,556 to 295,020 _0312 Ga0059261_0313: Ga0059261_0313 - transcriptional regulator, XRE family, at 295,028 to 295,243 _0313 Ga0059261_0314: Ga0059261_0314 - hypothetical protein, at 295,310 to 295,747 _0314 Ga0059261_0315: Ga0059261_0315 - transcriptional regulator, Spx/MgsR family, at 295,819 to 296,166 _0315 Ga0059261_0316: Ga0059261_0316 - hypothetical protein, at 296,163 to 296,765 _0316 Position (kb) 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 294.562 kb on + strandat 294.619 kb on + strand, within Ga0059261_0312at 294.619 kb on + strand, within Ga0059261_0312at 294.619 kb on + strand, within Ga0059261_0312at 294.823 kb on + strand, within Ga0059261_0312at 294.823 kb on + strand, within Ga0059261_0312at 294.825 kb on + strand, within Ga0059261_0312at 294.825 kb on + strand, within Ga0059261_0312at 294.825 kb on + strand, within Ga0059261_0312at 294.825 kb on + strand, within Ga0059261_0312at 294.825 kb on + strand, within Ga0059261_0312at 294.825 kb on + strandat 294.825 kb on + strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 294.826 kb on - strand, within Ga0059261_0312at 295.000 kb on + strandat 295.003 kb on + strandat 295.153 kb on + strand, within Ga0059261_0313at 295.282 kb on + strandat 295.376 kb on + strand, within Ga0059261_0314at 295.377 kb on - strand, within Ga0059261_0314at 295.377 kb on - strand, within Ga0059261_0314at 295.392 kb on + strand, within Ga0059261_0314at 295.392 kb on + strand, within Ga0059261_0314at 295.392 kb on + strand, within Ga0059261_0314at 295.392 kb on + strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.393 kb on - strand, within Ga0059261_0314at 295.443 kb on + strand, within Ga0059261_0314at 295.443 kb on + strand, within Ga0059261_0314at 295.443 kb on + strand, within Ga0059261_0314at 295.444 kb on - strand, within Ga0059261_0314at 295.482 kb on + strand, within Ga0059261_0314at 295.482 kb on + strand, within Ga0059261_0314at 295.482 kb on + strand, within Ga0059261_0314at 295.483 kb on - strand, within Ga0059261_0314at 295.483 kb on - strand, within Ga0059261_0314at 295.483 kb on - strand, within Ga0059261_0314at 295.557 kb on + strand, within Ga0059261_0314at 295.557 kb on + strand, within Ga0059261_0314at 295.558 kb on - strandat 295.558 kb on - strand, within Ga0059261_0314at 295.558 kb on - strand, within Ga0059261_0314at 295.558 kb on - strand, within Ga0059261_0314at 295.558 kb on - strand, within Ga0059261_0314at 295.558 kb on - strand, within Ga0059261_0314at 295.558 kb on - strand, within Ga0059261_0314at 295.590 kb on + strand, within Ga0059261_0314at 295.590 kb on + strand, within Ga0059261_0314at 295.590 kb on + strand, within Ga0059261_0314at 295.590 kb on + strand, within Ga0059261_0314at 295.591 kb on - strand, within Ga0059261_0314at 295.591 kb on - strand, within Ga0059261_0314at 295.591 kb on - strand, within Ga0059261_0314at 295.591 kb on - strand, within Ga0059261_0314at 295.605 kb on + strand, within Ga0059261_0314at 295.653 kb on + strand, within Ga0059261_0314at 295.654 kb on - strandat 295.707 kb on + strandat 295.707 kb on + strandat 295.708 kb on - strandat 295.708 kb on - strandat 295.779 kb on + strandat 295.779 kb on + strandat 295.780 kb on - strandat 295.787 kb on + strandat 295.792 kb on + strandat 295.793 kb on - strandat 295.877 kb on + strand, within Ga0059261_0315at 295.987 kb on - strand, within Ga0059261_0315at 296.067 kb on + strand, within Ga0059261_0315at 296.067 kb on + strand, within Ga0059261_0315at 296.067 kb on + strand, within Ga0059261_0315at 296.067 kb on + strand, within Ga0059261_0315at 296.068 kb on - strand, within Ga0059261_0315at 296.068 kb on - strand, within Ga0059261_0315at 296.068 kb on - strand, within Ga0059261_0315at 296.069 kb on + strandat 296.069 kb on + strand, within Ga0059261_0315at 296.070 kb on - strand, within Ga0059261_0315at 296.070 kb on - strand, within Ga0059261_0315at 296.070 kb on - strand, within Ga0059261_0315at 296.070 kb on - strand, within Ga0059261_0315at 296.070 kb on - strand, within Ga0059261_0315at 296.150 kb on + strandat 296.150 kb on + strandat 296.150 kb on + strandat 296.150 kb on + strandat 296.150 kb on + strandat 296.150 kb on + strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.151 kb on - strandat 296.296 kb on + strand, within Ga0059261_0316at 296.296 kb on + strand, within Ga0059261_0316at 296.296 kb on + strand, within Ga0059261_0316at 296.297 kb on - strand, within Ga0059261_0316at 296.297 kb on - strand, within Ga0059261_0316at 296.297 kb on - strand, within Ga0059261_0316at 296.297 kb on - strand, within Ga0059261_0316at 296.577 kb on + strand, within Ga0059261_0316at 296.578 kb on - strand, within Ga0059261_0316at 296.578 kb on - strand, within Ga0059261_0316at 296.631 kb on + strand, within Ga0059261_0316at 296.631 kb on + strand, within Ga0059261_0316at 296.632 kb on - strand, within Ga0059261_0316at 296.702 kb on + strand, within Ga0059261_0316

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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294,562 + -0.1
294,619 + Ga0059261_0312 0.14 +0.9
294,619 + Ga0059261_0312 0.14 +0.4
294,619 + Ga0059261_0312 0.14 +0.6
294,823 + Ga0059261_0312 0.57 +1.1
294,823 + Ga0059261_0312 0.57 -1.0
294,825 + Ga0059261_0312 0.58 -1.8
294,825 + Ga0059261_0312 0.58 -2.0
294,825 + Ga0059261_0312 0.58 +2.0
294,825 + Ga0059261_0312 0.58 -1.3
294,825 + Ga0059261_0312 0.58 +1.9
294,825 + +0.7
294,825 + Ga0059261_0312 0.58 +0.7
294,826 - Ga0059261_0312 0.58 +0.3
294,826 - Ga0059261_0312 0.58 +0.1
294,826 - Ga0059261_0312 0.58 -0.0
294,826 - Ga0059261_0312 0.58 +0.2
294,826 - Ga0059261_0312 0.58 -0.9
294,826 - Ga0059261_0312 0.58 +1.0
295,000 + -2.2
295,003 + +1.3
295,153 + Ga0059261_0313 0.58 +0.7
295,282 + +1.0
295,376 + Ga0059261_0314 0.15 -0.8
295,377 - Ga0059261_0314 0.15 -2.1
295,377 - Ga0059261_0314 0.15 -0.2
295,392 + Ga0059261_0314 0.19 -0.8
295,392 + Ga0059261_0314 0.19 -0.5
295,392 + Ga0059261_0314 0.19 -0.7
295,392 + Ga0059261_0314 0.19 -1.2
295,393 - Ga0059261_0314 0.19 -0.8
295,393 - Ga0059261_0314 0.19 +2.0
295,393 - Ga0059261_0314 0.19 -1.2
295,393 - Ga0059261_0314 0.19 -2.0
295,393 - Ga0059261_0314 0.19 -0.7
295,393 - Ga0059261_0314 0.19 -1.5
295,393 - Ga0059261_0314 0.19 +0.3
295,393 - Ga0059261_0314 0.19 +2.1
295,393 - Ga0059261_0314 0.19 -0.1
295,443 + Ga0059261_0314 0.30 +0.8
295,443 + Ga0059261_0314 0.30 +1.6
295,443 + Ga0059261_0314 0.30 -1.8
295,444 - Ga0059261_0314 0.31 +1.7
295,482 + Ga0059261_0314 0.39 -0.7
295,482 + Ga0059261_0314 0.39 +0.4
295,482 + Ga0059261_0314 0.39 +1.1
295,483 - Ga0059261_0314 0.39 +0.8
295,483 - Ga0059261_0314 0.39 -0.3
295,483 - Ga0059261_0314 0.39 -0.5
295,557 + Ga0059261_0314 0.56 +0.3
295,557 + Ga0059261_0314 0.56 +0.8
295,558 - +0.3
295,558 - Ga0059261_0314 0.57 +0.5
295,558 - Ga0059261_0314 0.57 +0.1
295,558 - Ga0059261_0314 0.57 -0.5
295,558 - Ga0059261_0314 0.57 -0.5
295,558 - Ga0059261_0314 0.57 -1.5
295,558 - Ga0059261_0314 0.57 +0.1
295,590 + Ga0059261_0314 0.64 -0.9
295,590 + Ga0059261_0314 0.64 -0.5
295,590 + Ga0059261_0314 0.64 -1.5
295,590 + Ga0059261_0314 0.64 +0.7
295,591 - Ga0059261_0314 0.64 +0.5
295,591 - Ga0059261_0314 0.64 -1.9
295,591 - Ga0059261_0314 0.64 -1.2
295,591 - Ga0059261_0314 0.64 -0.1
295,605 + Ga0059261_0314 0.67 +2.8
295,653 + Ga0059261_0314 0.78 -1.2
295,654 - +2.9
295,707 + -0.7
295,707 + +0.8
295,708 - +0.1
295,708 - +0.1
295,779 + -0.2
295,779 + -2.7
295,780 - +0.4
295,787 + -0.8
295,792 + -0.9
295,793 - -0.5
295,877 + Ga0059261_0315 0.17 +1.3
295,987 - Ga0059261_0315 0.48 +0.1
296,067 + Ga0059261_0315 0.71 -0.6
296,067 + Ga0059261_0315 0.71 +0.2
296,067 + Ga0059261_0315 0.71 -1.4
296,067 + Ga0059261_0315 0.71 -0.1
296,068 - Ga0059261_0315 0.72 -1.8
296,068 - Ga0059261_0315 0.72 +2.3
296,068 - Ga0059261_0315 0.72 +1.3
296,069 + -0.3
296,069 + Ga0059261_0315 0.72 -0.7
296,070 - Ga0059261_0315 0.72 +1.9
296,070 - Ga0059261_0315 0.72 +1.6
296,070 - Ga0059261_0315 0.72 +1.1
296,070 - Ga0059261_0315 0.72 -1.6
296,070 - Ga0059261_0315 0.72 +1.6
296,150 + -1.3
296,150 + +1.3
296,150 + -0.9
296,150 + +1.8
296,150 + -0.0
296,150 + -0.7
296,151 - -0.2
296,151 - -1.8
296,151 - +1.3
296,151 - +1.7
296,151 - -1.0
296,151 - -1.4
296,151 - -0.4
296,296 + Ga0059261_0316 0.22 -2.7
296,296 + Ga0059261_0316 0.22 -1.2
296,296 + Ga0059261_0316 0.22 -3.1
296,297 - Ga0059261_0316 0.22 +0.1
296,297 - Ga0059261_0316 0.22 -0.8
296,297 - Ga0059261_0316 0.22 +1.0
296,297 - Ga0059261_0316 0.22 -0.0
296,577 + Ga0059261_0316 0.69 -0.6
296,578 - Ga0059261_0316 0.69 -0.4
296,578 - Ga0059261_0316 0.69 -0.7
296,631 + Ga0059261_0316 0.78 -1.1
296,631 + Ga0059261_0316 0.78 -0.5
296,632 - Ga0059261_0316 0.78 +1.3
296,702 + Ga0059261_0316 0.89 -2.1

Or see this region's nucleotide sequence