Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19120 and CSW01_19125 overlap by 4 nucleotides CSW01_19125 and CSW01_19130 are separated by 51 nucleotides CSW01_19130 and CSW01_19135 are separated by 115 nucleotides CSW01_19135 and CSW01_19140 are separated by 96 nucleotides
CSW01_19120: CSW01_19120 - branched-chain amino acid ABC transporter permease, at 954,305 to 955,024
_19120
CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338
_19125
CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004
_19130
CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578
_19135
CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112
_19140
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 954.398 kb on - strand, within CSW01_19120 at 954.398 kb on - strand, within CSW01_19120 at 954.406 kb on - strand, within CSW01_19120 at 954.481 kb on + strand, within CSW01_19120 at 954.500 kb on - strand, within CSW01_19120 at 954.544 kb on - strand, within CSW01_19120 at 954.602 kb on - strand, within CSW01_19120 at 954.659 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.673 kb on - strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.734 kb on + strand, within CSW01_19120 at 954.788 kb on + strand, within CSW01_19120 at 954.804 kb on + strand, within CSW01_19120 at 954.822 kb on - strand, within CSW01_19120 at 954.918 kb on - strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.959 kb on - strand at 955.136 kb on + strand, within CSW01_19125 at 955.247 kb on - strand, within CSW01_19125 at 955.286 kb on - strand, within CSW01_19125 at 955.296 kb on - strand, within CSW01_19125 at 955.312 kb on - strand at 955.319 kb on + strand at 955.322 kb on - strand at 955.322 kb on - strand at 955.333 kb on + strand at 955.361 kb on - strand at 955.361 kb on - strand at 955.365 kb on - strand at 955.415 kb on + strand at 955.425 kb on + strand at 955.428 kb on - strand at 955.433 kb on - strand at 955.480 kb on + strand, within CSW01_19130 at 955.511 kb on - strand, within CSW01_19130 at 955.604 kb on + strand, within CSW01_19130 at 955.604 kb on - strand, within CSW01_19130 at 955.682 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.732 kb on + strand, within CSW01_19130 at 955.733 kb on - strand, within CSW01_19130 at 955.735 kb on - strand, within CSW01_19130 at 955.815 kb on - strand, within CSW01_19130 at 955.852 kb on - strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.876 kb on - strand, within CSW01_19130 at 955.917 kb on - strand, within CSW01_19130 at 955.942 kb on - strand, within CSW01_19130 at 956.000 kb on - strand at 956.011 kb on + strand at 956.019 kb on - strand at 956.173 kb on + strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.225 kb on - strand, within CSW01_19135 at 956.261 kb on - strand, within CSW01_19135 at 956.419 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.503 kb on + strand, within CSW01_19135 at 956.503 kb on - strand, within CSW01_19135 at 956.506 kb on - strand, within CSW01_19135 at 956.574 kb on + strand at 956.582 kb on - strand at 956.582 kb on - strand at 956.729 kb on + strand, within CSW01_19140 at 956.729 kb on - strand, within CSW01_19140 at 956.731 kb on + strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.743 kb on + strand, within CSW01_19140 at 956.806 kb on - strand, within CSW01_19140 at 956.828 kb on - strand, within CSW01_19140 at 956.844 kb on + strand, within CSW01_19140 at 956.850 kb on - strand, within CSW01_19140 at 956.948 kb on + strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 954,398 - CSW01_19120 0.13 -0.1 954,398 - CSW01_19120 0.13 +0.5 954,406 - CSW01_19120 0.14 +0.1 954,481 + CSW01_19120 0.24 +0.1 954,500 - CSW01_19120 0.27 +0.4 954,544 - CSW01_19120 0.33 -0.4 954,602 - CSW01_19120 0.41 +0.3 954,659 - CSW01_19120 0.49 +0.8 954,671 - CSW01_19120 0.51 +0.6 954,671 - CSW01_19120 0.51 +0.9 954,671 - CSW01_19120 0.51 +0.5 954,673 - CSW01_19120 0.51 +3.4 954,729 + CSW01_19120 0.59 +0.8 954,729 + CSW01_19120 0.59 -0.3 954,729 + CSW01_19120 0.59 -0.6 954,734 + CSW01_19120 0.60 +0.8 954,788 + CSW01_19120 0.67 +0.6 954,804 + CSW01_19120 0.69 -0.1 954,822 - CSW01_19120 0.72 +0.0 954,918 - CSW01_19120 0.85 -1.3 954,920 + CSW01_19120 0.85 +0.2 954,920 + CSW01_19120 0.85 +0.6 954,920 + CSW01_19120 0.85 +0.2 954,928 - CSW01_19120 0.87 +0.1 954,928 - CSW01_19120 0.87 -0.3 954,928 - CSW01_19120 0.87 +0.1 954,959 - -0.1 955,136 + CSW01_19125 0.36 +0.3 955,247 - CSW01_19125 0.71 +1.4 955,286 - CSW01_19125 0.83 +0.0 955,296 - CSW01_19125 0.86 -0.1 955,312 - -0.3 955,319 + -0.8 955,322 - +0.5 955,322 - -0.0 955,333 + -0.1 955,361 - -1.1 955,361 - +0.6 955,365 - -1.0 955,415 + -0.7 955,425 + +0.7 955,428 - +0.8 955,433 - +0.5 955,480 + CSW01_19130 0.15 -0.3 955,511 - CSW01_19130 0.20 -0.7 955,604 + CSW01_19130 0.35 -0.6 955,604 - CSW01_19130 0.35 +2.5 955,682 - CSW01_19130 0.47 -1.1 955,723 - CSW01_19130 0.54 -0.0 955,723 - CSW01_19130 0.54 -0.3 955,732 + CSW01_19130 0.56 +1.8 955,733 - CSW01_19130 0.56 -0.8 955,735 - CSW01_19130 0.56 +0.4 955,815 - CSW01_19130 0.69 -0.9 955,852 - CSW01_19130 0.75 -0.5 955,868 + CSW01_19130 0.78 +2.3 955,868 + CSW01_19130 0.78 -0.5 955,876 - CSW01_19130 0.79 +0.3 955,917 - CSW01_19130 0.86 +0.5 955,942 - CSW01_19130 0.90 -0.4 956,000 - +1.0 956,011 + -0.0 956,019 - +0.2 956,173 + CSW01_19135 0.12 -1.1 956,181 - CSW01_19135 0.13 -0.5 956,181 - CSW01_19135 0.13 +0.4 956,181 - CSW01_19135 0.13 -0.3 956,220 - CSW01_19135 0.22 -0.5 956,220 - CSW01_19135 0.22 +0.1 956,222 + CSW01_19135 0.22 -0.5 956,222 + CSW01_19135 0.22 +0.0 956,225 - CSW01_19135 0.23 +0.4 956,261 - CSW01_19135 0.31 -0.2 956,419 + CSW01_19135 0.65 +0.3 956,472 + CSW01_19135 0.77 +0.4 956,472 + CSW01_19135 0.77 +0.4 956,503 + CSW01_19135 0.83 -0.1 956,503 - CSW01_19135 0.83 -0.3 956,506 - CSW01_19135 0.84 -0.4 956,574 + -0.2 956,582 - -0.7 956,582 - +1.2 956,729 + CSW01_19140 0.12 +0.9 956,729 - CSW01_19140 0.12 -0.1 956,731 + CSW01_19140 0.13 -0.1 956,742 - CSW01_19140 0.15 +0.3 956,742 - CSW01_19140 0.15 -0.2 956,743 + CSW01_19140 0.16 -2.1 956,806 - CSW01_19140 0.30 +0.6 956,828 - CSW01_19140 0.35 -0.8 956,844 + CSW01_19140 0.39 -0.3 956,850 - CSW01_19140 0.40 -1.5 956,948 + CSW01_19140 0.62 +0.1 956,978 - CSW01_19140 0.69 -0.5 956,978 - CSW01_19140 0.69 -0.5
Or see this region's nucleotide sequence