Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18905

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18895 and CSW01_18900 are separated by 75 nucleotidesCSW01_18900 and CSW01_18905 are separated by 168 nucleotidesCSW01_18905 and CSW01_18910 are separated by 118 nucleotidesCSW01_18910 and CSW01_18915 are separated by 118 nucleotides CSW01_18895: CSW01_18895 - chemotaxis protein CheV, at 901,318 to 902,238 _18895 CSW01_18900: CSW01_18900 - MarR family transcriptional regulator, at 902,314 to 902,838 _18900 CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026 _18905 CSW01_18910: CSW01_18910 - malate synthase, at 904,145 to 904,753 _18910 CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389 _18915 Position (kb) 903 904 905Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 902.143 kb on + strand, within CSW01_18895at 902.262 kb on - strandat 902.319 kb on - strandat 902.320 kb on - strandat 902.322 kb on + strandat 902.322 kb on + strandat 902.489 kb on + strand, within CSW01_18900at 902.489 kb on + strand, within CSW01_18900at 902.497 kb on - strand, within CSW01_18900at 902.518 kb on - strand, within CSW01_18900at 902.544 kb on + strand, within CSW01_18900at 902.576 kb on - strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.628 kb on + strand, within CSW01_18900at 902.628 kb on + strand, within CSW01_18900at 902.635 kb on - strand, within CSW01_18900at 902.654 kb on - strand, within CSW01_18900at 902.663 kb on + strand, within CSW01_18900at 902.682 kb on + strand, within CSW01_18900at 902.782 kb on + strand, within CSW01_18900at 902.807 kb on - strandat 902.841 kb on + strandat 902.861 kb on + strandat 902.874 kb on + strandat 902.920 kb on - strandat 902.922 kb on - strandat 903.114 kb on + strand, within CSW01_18905at 903.316 kb on - strand, within CSW01_18905at 903.372 kb on - strand, within CSW01_18905at 903.438 kb on + strand, within CSW01_18905at 903.446 kb on - strand, within CSW01_18905at 903.494 kb on + strand, within CSW01_18905at 903.568 kb on + strand, within CSW01_18905at 903.609 kb on + strand, within CSW01_18905at 903.609 kb on + strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.632 kb on + strand, within CSW01_18905at 903.664 kb on + strand, within CSW01_18905at 903.665 kb on - strand, within CSW01_18905at 903.741 kb on - strand, within CSW01_18905at 903.863 kb on + strand, within CSW01_18905at 903.900 kb on + strand, within CSW01_18905at 903.944 kb on + strandat 904.020 kb on + strandat 904.020 kb on + strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.082 kb on + strandat 904.090 kb on - strandat 904.090 kb on - strandat 904.184 kb on + strandat 904.194 kb on + strandat 904.194 kb on + strandat 904.229 kb on + strand, within CSW01_18910at 904.252 kb on + strand, within CSW01_18910at 904.260 kb on - strand, within CSW01_18910at 904.264 kb on + strand, within CSW01_18910at 904.283 kb on - strand, within CSW01_18910at 904.304 kb on + strand, within CSW01_18910at 904.351 kb on + strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.523 kb on + strand, within CSW01_18910at 904.726 kb on - strandat 904.978 kb on + strandat 904.998 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
remove
902,143 + CSW01_18895 0.90 +0.2
902,262 - +0.5
902,319 - +0.8
902,320 - -0.2
902,322 + +0.4
902,322 + +1.5
902,489 + CSW01_18900 0.33 +1.9
902,489 + CSW01_18900 0.33 +0.1
902,497 - CSW01_18900 0.35 +0.9
902,518 - CSW01_18900 0.39 +1.5
902,544 + CSW01_18900 0.44 -0.5
902,576 - CSW01_18900 0.50 -2.9
902,589 + CSW01_18900 0.52 +1.1
902,589 + CSW01_18900 0.52 -0.1
902,589 + CSW01_18900 0.52 -0.4
902,597 - CSW01_18900 0.54 +1.6
902,597 - CSW01_18900 0.54 +0.7
902,597 - CSW01_18900 0.54 -0.2
902,597 - CSW01_18900 0.54 +0.6
902,597 - CSW01_18900 0.54 -0.9
902,597 - CSW01_18900 0.54 +0.1
902,628 + CSW01_18900 0.60 +1.2
902,628 + CSW01_18900 0.60 -0.2
902,635 - CSW01_18900 0.61 -0.4
902,654 - CSW01_18900 0.65 +0.1
902,663 + CSW01_18900 0.66 +0.3
902,682 + CSW01_18900 0.70 +0.4
902,782 + CSW01_18900 0.89 +0.8
902,807 - +3.5
902,841 + +0.1
902,861 + +0.7
902,874 + +0.8
902,920 - +2.2
902,922 - -0.7
903,114 + CSW01_18905 0.10 -0.7
903,316 - CSW01_18905 0.30 +1.3
903,372 - CSW01_18905 0.36 -0.3
903,438 + CSW01_18905 0.42 -0.3
903,446 - CSW01_18905 0.43 +1.5
903,494 + CSW01_18905 0.48 -0.7
903,568 + CSW01_18905 0.55 +0.2
903,609 + CSW01_18905 0.59 +0.3
903,609 + CSW01_18905 0.59 +1.5
903,617 - CSW01_18905 0.60 +0.6
903,617 - CSW01_18905 0.60 +0.3
903,617 - CSW01_18905 0.60 +0.2
903,617 - CSW01_18905 0.60 -0.6
903,632 + CSW01_18905 0.61 +0.3
903,664 + CSW01_18905 0.64 +0.4
903,665 - CSW01_18905 0.65 +0.8
903,741 - CSW01_18905 0.72 -0.1
903,863 + CSW01_18905 0.84 +0.4
903,900 + CSW01_18905 0.88 +0.2
903,944 + +0.1
904,020 + -0.0
904,020 + -0.3
904,028 - +0.5
904,028 - +0.6
904,028 - +0.1
904,082 + -0.2
904,090 - -1.2
904,090 - +0.6
904,184 + +0.2
904,194 + -0.6
904,194 + -0.2
904,229 + CSW01_18910 0.14 +0.4
904,252 + CSW01_18910 0.18 -0.4
904,260 - CSW01_18910 0.19 +0.9
904,264 + CSW01_18910 0.20 +0.5
904,283 - CSW01_18910 0.23 +0.5
904,304 + CSW01_18910 0.26 -0.9
904,351 + CSW01_18910 0.34 +1.0
904,411 - CSW01_18910 0.44 -0.5
904,411 - CSW01_18910 0.44 +0.3
904,523 + CSW01_18910 0.62 +0.0
904,726 - -0.4
904,978 + +2.1
904,998 - -0.1

Or see this region's nucleotide sequence