Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18850

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18845 and CSW01_18850 are separated by 11 nucleotidesCSW01_18850 and CSW01_18855 are separated by 74 nucleotides CSW01_18845: CSW01_18845 - maltose ABC transporter permease, at 891,644 to 892,534 _18845 CSW01_18850: CSW01_18850 - maltose ABC transporter permease MalF, at 892,546 to 894,120 _18850 CSW01_18855: CSW01_18855 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 894,195 to 895,376 _18855 Position (kb) 892 893 894 895Strain fitness (log2 ratio) -1 0 1 2 3at 891.681 kb on + strandat 891.689 kb on - strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.731 kb on - strandat 891.731 kb on - strandat 891.804 kb on - strand, within CSW01_18845at 891.837 kb on - strand, within CSW01_18845at 891.924 kb on - strand, within CSW01_18845at 891.929 kb on - strand, within CSW01_18845at 891.948 kb on - strand, within CSW01_18845at 891.950 kb on + strand, within CSW01_18845at 891.958 kb on - strand, within CSW01_18845at 892.029 kb on - strand, within CSW01_18845at 892.088 kb on - strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.135 kb on - strand, within CSW01_18845at 892.216 kb on - strand, within CSW01_18845at 892.363 kb on + strand, within CSW01_18845at 892.512 kb on + strandat 892.568 kb on - strandat 892.569 kb on + strandat 892.584 kb on + strandat 892.638 kb on - strandat 892.685 kb on - strandat 892.685 kb on - strandat 892.687 kb on - strandat 892.693 kb on - strandat 892.708 kb on - strand, within CSW01_18850at 892.708 kb on - strand, within CSW01_18850at 892.886 kb on + strand, within CSW01_18850at 892.923 kb on - strand, within CSW01_18850at 893.001 kb on - strand, within CSW01_18850at 893.033 kb on + strand, within CSW01_18850at 893.104 kb on + strand, within CSW01_18850at 893.122 kb on - strand, within CSW01_18850at 893.133 kb on - strand, within CSW01_18850at 893.146 kb on - strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.341 kb on - strand, within CSW01_18850at 893.436 kb on + strand, within CSW01_18850at 893.458 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.635 kb on - strand, within CSW01_18850at 893.642 kb on - strand, within CSW01_18850at 893.696 kb on + strand, within CSW01_18850at 893.752 kb on + strand, within CSW01_18850at 893.761 kb on + strand, within CSW01_18850at 893.761 kb on + strand, within CSW01_18850at 893.781 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.842 kb on - strand, within CSW01_18850at 893.842 kb on - strand, within CSW01_18850at 893.861 kb on - strand, within CSW01_18850at 893.888 kb on + strand, within CSW01_18850at 893.915 kb on - strand, within CSW01_18850at 893.931 kb on + strand, within CSW01_18850at 893.954 kb on - strand, within CSW01_18850at 893.955 kb on - strand, within CSW01_18850at 894.041 kb on - strandat 894.041 kb on - strandat 894.070 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.225 kb on - strandat 894.408 kb on + strand, within CSW01_18855at 894.423 kb on - strand, within CSW01_18855at 894.505 kb on + strand, within CSW01_18855at 894.513 kb on - strand, within CSW01_18855at 894.530 kb on - strand, within CSW01_18855at 894.547 kb on - strand, within CSW01_18855at 894.643 kb on + strand, within CSW01_18855at 894.654 kb on + strand, within CSW01_18855at 894.662 kb on - strand, within CSW01_18855at 894.672 kb on - strand, within CSW01_18855at 894.672 kb on - strand, within CSW01_18855at 894.696 kb on + strand, within CSW01_18855at 894.748 kb on + strand, within CSW01_18855at 894.834 kb on - strand, within CSW01_18855at 894.859 kb on - strand, within CSW01_18855at 894.913 kb on - strand, within CSW01_18855at 894.934 kb on + strand, within CSW01_18855at 894.941 kb on + strand, within CSW01_18855

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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891,681 + +1.0
891,689 - -0.1
891,723 + +0.5
891,723 + +1.1
891,723 + -0.1
891,731 - -0.2
891,731 - +0.6
891,804 - CSW01_18845 0.18 +0.1
891,837 - CSW01_18845 0.22 +0.4
891,924 - CSW01_18845 0.31 +1.1
891,929 - CSW01_18845 0.32 -0.7
891,948 - CSW01_18845 0.34 -0.6
891,950 + CSW01_18845 0.34 +0.1
891,958 - CSW01_18845 0.35 +1.2
892,029 - CSW01_18845 0.43 -0.2
892,088 - CSW01_18845 0.50 +0.1
892,090 + CSW01_18845 0.50 +0.0
892,090 + CSW01_18845 0.50 +0.2
892,090 + CSW01_18845 0.50 +0.5
892,127 + CSW01_18845 0.54 -0.3
892,127 + CSW01_18845 0.54 -0.8
892,135 - CSW01_18845 0.55 +0.0
892,216 - CSW01_18845 0.64 +0.5
892,363 + CSW01_18845 0.81 -0.4
892,512 + -0.1
892,568 - +0.2
892,569 + +1.4
892,584 + -0.0
892,638 - +0.1
892,685 - -0.6
892,685 - +0.1
892,687 - +0.5
892,693 - +0.0
892,708 - CSW01_18850 0.10 +0.2
892,708 - CSW01_18850 0.10 -1.0
892,886 + CSW01_18850 0.22 +0.2
892,923 - CSW01_18850 0.24 -0.3
893,001 - CSW01_18850 0.29 +0.5
893,033 + CSW01_18850 0.31 -0.2
893,104 + CSW01_18850 0.35 -0.0
893,122 - CSW01_18850 0.37 -0.8
893,133 - CSW01_18850 0.37 +0.5
893,146 - CSW01_18850 0.38 +0.7
893,172 + CSW01_18850 0.40 +0.7
893,172 + CSW01_18850 0.40 -0.1
893,180 - CSW01_18850 0.40 -0.3
893,180 - CSW01_18850 0.40 +1.1
893,180 - CSW01_18850 0.40 +0.1
893,180 - CSW01_18850 0.40 -0.9
893,180 - CSW01_18850 0.40 +0.4
893,182 + CSW01_18850 0.40 +0.9
893,182 + CSW01_18850 0.40 -0.4
893,182 + CSW01_18850 0.40 +0.3
893,182 + CSW01_18850 0.40 +1.6
893,182 + CSW01_18850 0.40 +0.6
893,182 + CSW01_18850 0.40 +0.6
893,182 + CSW01_18850 0.40 -1.2
893,182 + CSW01_18850 0.40 -0.5
893,190 - CSW01_18850 0.41 +1.2
893,190 - CSW01_18850 0.41 -0.0
893,190 - CSW01_18850 0.41 +0.7
893,190 - CSW01_18850 0.41 -0.1
893,341 - CSW01_18850 0.50 +1.2
893,436 + CSW01_18850 0.57 +0.9
893,458 + CSW01_18850 0.58 +0.5
893,459 + CSW01_18850 0.58 +0.3
893,459 + CSW01_18850 0.58 +0.6
893,459 + CSW01_18850 0.58 +0.7
893,459 + CSW01_18850 0.58 -0.4
893,467 - CSW01_18850 0.58 +1.8
893,467 - CSW01_18850 0.58 -0.7
893,467 - CSW01_18850 0.58 -0.4
893,467 - CSW01_18850 0.58 +0.6
893,635 - CSW01_18850 0.69 +0.7
893,642 - CSW01_18850 0.70 +0.0
893,696 + CSW01_18850 0.73 +0.0
893,752 + CSW01_18850 0.77 +0.6
893,761 + CSW01_18850 0.77 +2.4
893,761 + CSW01_18850 0.77 -0.2
893,781 + CSW01_18850 0.78 -0.5
893,834 + CSW01_18850 0.82 +1.3
893,834 + CSW01_18850 0.82 +0.9
893,834 + CSW01_18850 0.82 +3.2
893,842 - CSW01_18850 0.82 -0.7
893,842 - CSW01_18850 0.82 -0.9
893,861 - CSW01_18850 0.83 +1.9
893,888 + CSW01_18850 0.85 -1.0
893,915 - CSW01_18850 0.87 -1.0
893,931 + CSW01_18850 0.88 +0.1
893,954 - CSW01_18850 0.89 -0.2
893,955 - CSW01_18850 0.89 +0.2
894,041 - +1.4
894,041 - +1.1
894,070 + +2.2
894,089 + -0.6
894,089 + +0.8
894,089 + +0.7
894,089 + +0.3
894,097 - +1.1
894,097 - +0.3
894,097 - +0.4
894,097 - -0.0
894,097 - +0.7
894,097 - -0.5
894,097 - +0.2
894,103 + -1.1
894,103 + +0.7
894,103 + -1.4
894,103 + +1.8
894,111 - +0.8
894,111 - -0.3
894,111 - +0.7
894,111 - +1.3
894,111 - -0.9
894,225 - +0.8
894,408 + CSW01_18855 0.18 +0.9
894,423 - CSW01_18855 0.19 +0.2
894,505 + CSW01_18855 0.26 -0.2
894,513 - CSW01_18855 0.27 -0.7
894,530 - CSW01_18855 0.28 +1.0
894,547 - CSW01_18855 0.30 -0.9
894,643 + CSW01_18855 0.38 +0.7
894,654 + CSW01_18855 0.39 +0.6
894,662 - CSW01_18855 0.40 +0.6
894,672 - CSW01_18855 0.40 +0.2
894,672 - CSW01_18855 0.40 -0.0
894,696 + CSW01_18855 0.42 +0.0
894,748 + CSW01_18855 0.47 -0.6
894,834 - CSW01_18855 0.54 +1.6
894,859 - CSW01_18855 0.56 -0.1
894,913 - CSW01_18855 0.61 -0.8
894,934 + CSW01_18855 0.63 -0.2
894,941 + CSW01_18855 0.63 +0.1

Or see this region's nucleotide sequence