Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18715

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18705 and CSW01_18710 are separated by 10 nucleotidesCSW01_18710 and CSW01_18715 are separated by 11 nucleotidesCSW01_18715 and CSW01_18720 overlap by 1 nucleotidesCSW01_18720 and CSW01_18725 are separated by 133 nucleotides CSW01_18705: CSW01_18705 - biopolymer transporter exbD1, at 865,309 to 865,725 _18705 CSW01_18710: CSW01_18710 - hemin ABC transporter substrate-binding protein, at 865,736 to 866,569 _18710 CSW01_18715: CSW01_18715 - iron ABC transporter permease, at 866,581 to 867,612 _18715 CSW01_18720: CSW01_18720 - hemin import ATP-binding protein HmuV, at 867,612 to 868,391 _18720 CSW01_18725: CSW01_18725 - TetR/AcrR family transcriptional regulator, at 868,525 to 869,010 _18725 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2 3at 865.706 kb on - strandat 865.854 kb on + strand, within CSW01_18710at 865.854 kb on + strand, within CSW01_18710at 865.970 kb on - strand, within CSW01_18710at 866.080 kb on - strand, within CSW01_18710at 866.164 kb on + strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.287 kb on + strand, within CSW01_18710at 866.340 kb on + strand, within CSW01_18710at 866.348 kb on - strand, within CSW01_18710at 866.375 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.433 kb on - strand, within CSW01_18710at 866.470 kb on - strand, within CSW01_18710at 866.555 kb on + strandat 866.555 kb on + strandat 866.565 kb on - strandat 866.725 kb on - strand, within CSW01_18715at 866.911 kb on + strand, within CSW01_18715at 866.919 kb on + strand, within CSW01_18715at 866.940 kb on + strand, within CSW01_18715at 866.943 kb on - strand, within CSW01_18715at 866.954 kb on + strand, within CSW01_18715at 867.060 kb on + strand, within CSW01_18715at 867.094 kb on + strand, within CSW01_18715at 867.102 kb on - strand, within CSW01_18715at 867.125 kb on + strand, within CSW01_18715at 867.125 kb on + strand, within CSW01_18715at 867.133 kb on - strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.203 kb on + strand, within CSW01_18715at 867.211 kb on - strand, within CSW01_18715at 867.260 kb on + strand, within CSW01_18715at 867.453 kb on + strand, within CSW01_18715at 867.722 kb on - strand, within CSW01_18720at 867.722 kb on - strand, within CSW01_18720at 867.773 kb on + strand, within CSW01_18720at 867.799 kb on + strand, within CSW01_18720at 867.916 kb on + strand, within CSW01_18720at 867.919 kb on - strand, within CSW01_18720at 867.982 kb on - strand, within CSW01_18720at 867.987 kb on + strand, within CSW01_18720at 867.987 kb on + strand, within CSW01_18720at 867.987 kb on + strand, within CSW01_18720at 867.987 kb on + strand, within CSW01_18720at 867.995 kb on - strand, within CSW01_18720at 867.995 kb on - strand, within CSW01_18720at 867.995 kb on - strand, within CSW01_18720at 868.007 kb on + strand, within CSW01_18720at 868.014 kb on - strand, within CSW01_18720at 868.015 kb on - strand, within CSW01_18720at 868.056 kb on + strand, within CSW01_18720at 868.073 kb on + strand, within CSW01_18720at 868.182 kb on + strand, within CSW01_18720at 868.417 kb on + strandat 868.425 kb on - strandat 868.425 kb on - strandat 868.425 kb on - strandat 868.457 kb on + strandat 868.465 kb on - strandat 868.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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865,706 - -0.2
865,854 + CSW01_18710 0.14 -0.9
865,854 + CSW01_18710 0.14 -1.4
865,970 - CSW01_18710 0.28 +0.2
866,080 - CSW01_18710 0.41 -0.0
866,164 + CSW01_18710 0.51 -0.7
866,172 - CSW01_18710 0.52 +0.5
866,172 - CSW01_18710 0.52 -1.3
866,287 + CSW01_18710 0.66 +0.3
866,340 + CSW01_18710 0.72 -1.2
866,348 - CSW01_18710 0.73 -1.0
866,375 + CSW01_18710 0.77 -0.2
866,425 + CSW01_18710 0.83 -0.7
866,425 + CSW01_18710 0.83 +0.0
866,425 + CSW01_18710 0.83 +1.0
866,433 - CSW01_18710 0.84 -0.1
866,470 - CSW01_18710 0.88 +0.0
866,555 + -0.5
866,555 + +1.2
866,565 - -0.4
866,725 - CSW01_18715 0.14 +0.2
866,911 + CSW01_18715 0.32 +0.8
866,919 + CSW01_18715 0.33 +0.9
866,940 + CSW01_18715 0.35 +0.3
866,943 - CSW01_18715 0.35 -0.0
866,954 + CSW01_18715 0.36 -0.2
867,060 + CSW01_18715 0.46 -0.4
867,094 + CSW01_18715 0.50 -0.5
867,102 - CSW01_18715 0.50 -0.8
867,125 + CSW01_18715 0.53 -0.8
867,125 + CSW01_18715 0.53 -1.2
867,133 - CSW01_18715 0.53 +0.9
867,140 + CSW01_18715 0.54 +1.0
867,140 + CSW01_18715 0.54 -0.7
867,140 + CSW01_18715 0.54 +3.0
867,148 - CSW01_18715 0.55 -1.4
867,148 - CSW01_18715 0.55 +0.6
867,148 - CSW01_18715 0.55 +0.0
867,148 - CSW01_18715 0.55 -0.2
867,203 + CSW01_18715 0.60 +0.2
867,211 - CSW01_18715 0.61 -0.5
867,260 + CSW01_18715 0.66 -0.6
867,453 + CSW01_18715 0.84 -1.8
867,722 - CSW01_18720 0.14 +0.5
867,722 - CSW01_18720 0.14 +0.9
867,773 + CSW01_18720 0.21 -0.1
867,799 + CSW01_18720 0.24 +0.7
867,916 + CSW01_18720 0.39 +0.3
867,919 - CSW01_18720 0.39 -0.2
867,982 - CSW01_18720 0.47 +0.1
867,987 + CSW01_18720 0.48 +0.6
867,987 + CSW01_18720 0.48 +1.0
867,987 + CSW01_18720 0.48 +0.7
867,987 + CSW01_18720 0.48 +0.9
867,995 - CSW01_18720 0.49 +1.5
867,995 - CSW01_18720 0.49 -2.1
867,995 - CSW01_18720 0.49 -0.7
868,007 + CSW01_18720 0.51 -1.0
868,014 - CSW01_18720 0.52 -0.2
868,015 - CSW01_18720 0.52 +1.1
868,056 + CSW01_18720 0.57 -0.1
868,073 + CSW01_18720 0.59 +0.8
868,182 + CSW01_18720 0.73 +0.3
868,417 + +0.1
868,425 - +1.3
868,425 - +0.3
868,425 - +1.0
868,457 + +0.4
868,465 - -1.1
868,483 + -0.6

Or see this region's nucleotide sequence