Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18460

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18455 and CSW01_18460 overlap by 15 nucleotidesCSW01_18460 and CSW01_18465 are separated by 195 nucleotides CSW01_18455: CSW01_18455 - hemagglutinin/proteinase, at 815,545 to 817,374 _18455 CSW01_18460: CSW01_18460 - hypothetical protein, at 817,360 to 817,599 _18460 CSW01_18465: CSW01_18465 - outer membrane protein W, at 817,795 to 818,448 _18465 Position (kb) 817 818Strain fitness (log2 ratio) -1 0 1 2at 816.550 kb on - strand, within CSW01_18455at 816.571 kb on - strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.588 kb on + strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.668 kb on + strand, within CSW01_18455at 816.676 kb on - strand, within CSW01_18455at 816.689 kb on + strand, within CSW01_18455at 816.811 kb on + strand, within CSW01_18455at 816.819 kb on + strand, within CSW01_18455at 816.828 kb on + strand, within CSW01_18455at 816.907 kb on - strand, within CSW01_18455at 816.926 kb on - strand, within CSW01_18455at 816.942 kb on - strand, within CSW01_18455at 817.007 kb on - strand, within CSW01_18455at 817.030 kb on - strand, within CSW01_18455at 817.044 kb on - strand, within CSW01_18455at 817.078 kb on + strand, within CSW01_18455at 817.086 kb on - strand, within CSW01_18455at 817.230 kb on + strandat 817.230 kb on + strandat 817.235 kb on + strandat 817.235 kb on + strandat 817.243 kb on - strandat 817.338 kb on + strandat 817.341 kb on - strandat 817.341 kb on - strandat 817.346 kb on - strandat 817.414 kb on - strand, within CSW01_18460at 817.414 kb on - strand, within CSW01_18460at 817.464 kb on + strand, within CSW01_18460at 817.677 kb on + strandat 817.871 kb on + strand, within CSW01_18465at 817.871 kb on + strand, within CSW01_18465at 817.916 kb on - strand, within CSW01_18465at 817.997 kb on - strand, within CSW01_18465at 818.059 kb on - strand, within CSW01_18465at 818.064 kb on - strand, within CSW01_18465at 818.073 kb on - strand, within CSW01_18465at 818.157 kb on + strand, within CSW01_18465at 818.162 kb on + strand, within CSW01_18465at 818.170 kb on - strand, within CSW01_18465at 818.175 kb on - strand, within CSW01_18465at 818.175 kb on - strand, within CSW01_18465at 818.193 kb on - strand, within CSW01_18465at 818.223 kb on + strand, within CSW01_18465at 818.231 kb on - strand, within CSW01_18465at 818.231 kb on - strand, within CSW01_18465at 818.248 kb on + strand, within CSW01_18465at 818.255 kb on - strand, within CSW01_18465at 818.257 kb on - strand, within CSW01_18465at 818.259 kb on + strand, within CSW01_18465at 818.260 kb on + strand, within CSW01_18465at 818.267 kb on - strand, within CSW01_18465at 818.306 kb on - strand, within CSW01_18465at 818.308 kb on + strand, within CSW01_18465at 818.308 kb on - strand, within CSW01_18465at 818.343 kb on - strand, within CSW01_18465at 818.355 kb on - strand, within CSW01_18465at 818.364 kb on + strand, within CSW01_18465at 818.364 kb on + strand, within CSW01_18465at 818.372 kb on - strand, within CSW01_18465at 818.404 kb on + strandat 818.404 kb on + strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.475 kb on + strandat 818.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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816,550 - CSW01_18455 0.55 +0.4
816,571 - CSW01_18455 0.56 +0.6
816,583 + CSW01_18455 0.57 -0.2
816,583 + CSW01_18455 0.57 +1.5
816,583 + CSW01_18455 0.57 +0.2
816,583 + CSW01_18455 0.57 -0.1
816,583 + CSW01_18455 0.57 +0.3
816,583 + CSW01_18455 0.57 +0.4
816,583 + CSW01_18455 0.57 +1.8
816,583 + CSW01_18455 0.57 +0.9
816,583 + CSW01_18455 0.57 +1.2
816,583 + CSW01_18455 0.57 -0.7
816,588 + CSW01_18455 0.57 -0.8
816,591 - CSW01_18455 0.57 +0.5
816,591 - CSW01_18455 0.57 +0.7
816,591 - CSW01_18455 0.57 +0.8
816,591 - CSW01_18455 0.57 +0.0
816,668 + CSW01_18455 0.61 -0.1
816,676 - CSW01_18455 0.62 -1.2
816,689 + CSW01_18455 0.63 -0.1
816,811 + CSW01_18455 0.69 -0.1
816,819 + CSW01_18455 0.70 -1.1
816,828 + CSW01_18455 0.70 -0.6
816,907 - CSW01_18455 0.74 -0.4
816,926 - CSW01_18455 0.75 +0.2
816,942 - CSW01_18455 0.76 -1.1
817,007 - CSW01_18455 0.80 +0.1
817,030 - CSW01_18455 0.81 +0.5
817,044 - CSW01_18455 0.82 -0.6
817,078 + CSW01_18455 0.84 -0.4
817,086 - CSW01_18455 0.84 -0.2
817,230 + -1.2
817,230 + -0.0
817,235 + +0.3
817,235 + -0.2
817,243 - -0.0
817,338 + -1.7
817,341 - +0.5
817,341 - -0.1
817,346 - -0.1
817,414 - CSW01_18460 0.23 -0.6
817,414 - CSW01_18460 0.23 -1.0
817,464 + CSW01_18460 0.43 +0.3
817,677 + -0.4
817,871 + CSW01_18465 0.12 +1.1
817,871 + CSW01_18465 0.12 -0.1
817,916 - CSW01_18465 0.19 -0.5
817,997 - CSW01_18465 0.31 -0.3
818,059 - CSW01_18465 0.40 -0.2
818,064 - CSW01_18465 0.41 +0.8
818,073 - CSW01_18465 0.43 +0.2
818,157 + CSW01_18465 0.55 +0.1
818,162 + CSW01_18465 0.56 -0.4
818,170 - CSW01_18465 0.57 -0.2
818,175 - CSW01_18465 0.58 -1.2
818,175 - CSW01_18465 0.58 -0.1
818,193 - CSW01_18465 0.61 -0.4
818,223 + CSW01_18465 0.65 -1.2
818,231 - CSW01_18465 0.67 -0.3
818,231 - CSW01_18465 0.67 -0.6
818,248 + CSW01_18465 0.69 -0.3
818,255 - CSW01_18465 0.70 -0.3
818,257 - CSW01_18465 0.71 +0.4
818,259 + CSW01_18465 0.71 +0.3
818,260 + CSW01_18465 0.71 -1.3
818,267 - CSW01_18465 0.72 +0.2
818,306 - CSW01_18465 0.78 -0.1
818,308 + CSW01_18465 0.78 -0.6
818,308 - CSW01_18465 0.78 -0.9
818,343 - CSW01_18465 0.84 +0.4
818,355 - CSW01_18465 0.86 +0.3
818,364 + CSW01_18465 0.87 -0.0
818,364 + CSW01_18465 0.87 -0.3
818,372 - CSW01_18465 0.88 +0.1
818,404 + +1.8
818,404 + +0.2
818,412 - -0.3
818,412 - +0.4
818,412 - -0.1
818,412 - +0.3
818,475 + -0.3
818,502 - +0.5

Or see this region's nucleotide sequence