Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18215

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18210 and CSW01_18215 are separated by 493 nucleotidesCSW01_18215 and CSW01_18220 are separated by 327 nucleotides CSW01_18210: CSW01_18210 - cryptochrome/photolyase family protein, at 751,620 to 753,170 _18210 CSW01_18215: CSW01_18215 - N-acetylglucosamine-binding protein GbpA, at 753,664 to 755,121 _18215 CSW01_18220: CSW01_18220 - peptidase, at 755,449 to 756,879 _18220 Position (kb) 753 754 755 756Strain fitness (log2 ratio) -1 0 1 2at 752.664 kb on - strand, within CSW01_18210at 752.712 kb on + strand, within CSW01_18210at 752.804 kb on - strand, within CSW01_18210at 752.851 kb on - strand, within CSW01_18210at 753.061 kb on + strandat 753.102 kb on - strandat 753.276 kb on - strandat 753.276 kb on - strandat 753.531 kb on - strandat 753.531 kb on - strandat 753.583 kb on + strandat 753.591 kb on - strandat 753.601 kb on + strandat 753.689 kb on + strandat 753.689 kb on + strandat 753.699 kb on + strandat 753.814 kb on - strand, within CSW01_18215at 753.814 kb on - strand, within CSW01_18215at 753.960 kb on + strand, within CSW01_18215at 754.198 kb on - strand, within CSW01_18215at 754.199 kb on - strand, within CSW01_18215at 754.277 kb on + strand, within CSW01_18215at 754.306 kb on + strand, within CSW01_18215at 754.314 kb on - strand, within CSW01_18215at 754.425 kb on + strand, within CSW01_18215at 754.490 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.564 kb on + strand, within CSW01_18215at 754.566 kb on + strand, within CSW01_18215at 754.602 kb on + strand, within CSW01_18215at 754.610 kb on - strand, within CSW01_18215at 754.653 kb on - strand, within CSW01_18215at 754.653 kb on - strand, within CSW01_18215at 754.714 kb on + strand, within CSW01_18215at 754.723 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.804 kb on - strand, within CSW01_18215at 754.804 kb on - strand, within CSW01_18215at 754.833 kb on - strand, within CSW01_18215at 754.884 kb on - strand, within CSW01_18215at 754.955 kb on + strand, within CSW01_18215at 755.007 kb on + strandat 755.025 kb on + strandat 755.025 kb on + strandat 755.025 kb on + strandat 755.073 kb on - strandat 755.190 kb on + strandat 755.210 kb on + strandat 755.240 kb on - strandat 755.244 kb on + strandat 755.280 kb on + strandat 755.481 kb on + strandat 755.489 kb on - strandat 755.523 kb on - strandat 755.527 kb on + strandat 755.527 kb on + strandat 755.527 kb on + strandat 755.552 kb on + strandat 755.560 kb on - strandat 755.580 kb on - strandat 755.602 kb on - strand, within CSW01_18220at 755.687 kb on + strand, within CSW01_18220at 755.729 kb on - strand, within CSW01_18220at 755.755 kb on + strand, within CSW01_18220at 755.793 kb on - strand, within CSW01_18220at 755.834 kb on + strand, within CSW01_18220at 755.967 kb on + strand, within CSW01_18220at 755.978 kb on - strand, within CSW01_18220at 755.998 kb on - strand, within CSW01_18220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
remove
752,664 - CSW01_18210 0.67 +0.5
752,712 + CSW01_18210 0.70 -0.0
752,804 - CSW01_18210 0.76 -0.7
752,851 - CSW01_18210 0.79 +1.0
753,061 + +0.5
753,102 - -0.0
753,276 - -0.6
753,276 - -0.3
753,531 - +1.1
753,531 - -0.1
753,583 + +0.7
753,591 - +0.2
753,601 + -0.4
753,689 + -0.4
753,689 + -0.6
753,699 + +0.2
753,814 - CSW01_18215 0.10 +1.7
753,814 - CSW01_18215 0.10 +2.1
753,960 + CSW01_18215 0.20 -0.4
754,198 - CSW01_18215 0.37 -1.0
754,199 - CSW01_18215 0.37 +0.4
754,277 + CSW01_18215 0.42 +0.8
754,306 + CSW01_18215 0.44 -1.0
754,314 - CSW01_18215 0.45 -0.5
754,425 + CSW01_18215 0.52 -0.4
754,490 + CSW01_18215 0.57 +2.5
754,500 + CSW01_18215 0.57 +0.0
754,500 + CSW01_18215 0.57 +1.6
754,500 + CSW01_18215 0.57 -0.4
754,508 - CSW01_18215 0.58 -0.8
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 -0.8
754,508 - CSW01_18215 0.58 -0.1
754,508 - CSW01_18215 0.58 +1.2
754,508 - CSW01_18215 0.58 +0.6
754,508 - CSW01_18215 0.58 -0.7
754,508 - CSW01_18215 0.58 +0.6
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 +0.0
754,564 + CSW01_18215 0.62 +0.2
754,566 + CSW01_18215 0.62 +0.9
754,602 + CSW01_18215 0.64 +0.3
754,610 - CSW01_18215 0.65 -0.6
754,653 - CSW01_18215 0.68 +0.9
754,653 - CSW01_18215 0.68 +0.1
754,714 + CSW01_18215 0.72 -0.4
754,723 + CSW01_18215 0.73 +0.0
754,796 + CSW01_18215 0.78 +0.6
754,796 + CSW01_18215 0.78 -0.3
754,796 + CSW01_18215 0.78 +0.4
754,796 + CSW01_18215 0.78 -0.2
754,796 + CSW01_18215 0.78 +1.2
754,804 - CSW01_18215 0.78 -0.6
754,804 - CSW01_18215 0.78 +0.3
754,833 - CSW01_18215 0.80 -0.0
754,884 - CSW01_18215 0.84 +0.2
754,955 + CSW01_18215 0.89 +1.4
755,007 + +0.6
755,025 + +0.9
755,025 + -0.2
755,025 + +1.9
755,073 - -1.6
755,190 + -0.6
755,210 + +1.2
755,240 - -0.5
755,244 + -0.3
755,280 + +0.3
755,481 + +1.0
755,489 - -0.7
755,523 - -0.2
755,527 + +0.0
755,527 + +0.6
755,527 + +0.6
755,552 + -0.5
755,560 - +0.0
755,580 - -0.9
755,602 - CSW01_18220 0.11 -0.6
755,687 + CSW01_18220 0.17 -0.7
755,729 - CSW01_18220 0.20 -0.7
755,755 + CSW01_18220 0.21 +1.0
755,793 - CSW01_18220 0.24 +1.0
755,834 + CSW01_18220 0.27 +0.2
755,967 + CSW01_18220 0.36 +0.1
755,978 - CSW01_18220 0.37 +0.2
755,998 - CSW01_18220 0.38 +1.6

Or see this region's nucleotide sequence