Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18110

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18105 and CSW01_18110 overlap by 4 nucleotidesCSW01_18110 and CSW01_18115 are separated by 56 nucleotidesCSW01_18115 and CSW01_18120 are separated by 235 nucleotides CSW01_18105: CSW01_18105 - isopentenyl-diphosphate delta-isomerase, at 729,149 to 730,798 _18105 CSW01_18110: CSW01_18110 - hypothetical protein, at 730,795 to 730,899 _18110 CSW01_18115: CSW01_18115 - molecular chaperone DnaJ, at 730,956 to 731,585 _18115 CSW01_18120: CSW01_18120 - DUF2238 domain-containing protein, at 731,821 to 732,408 _18120 Position (kb) 730 731Strain fitness (log2 ratio) -1 0 1at 731.115 kb on + strand, within CSW01_18115at 731.141 kb on - strand, within CSW01_18115at 731.237 kb on + strand, within CSW01_18115at 731.250 kb on - strand, within CSW01_18115at 731.260 kb on + strand, within CSW01_18115at 731.324 kb on - strand, within CSW01_18115at 731.357 kb on - strand, within CSW01_18115at 731.357 kb on - strand, within CSW01_18115at 731.369 kb on + strand, within CSW01_18115at 731.386 kb on - strand, within CSW01_18115at 731.454 kb on + strand, within CSW01_18115at 731.745 kb on + strandat 731.796 kb on - strandat 731.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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731,115 + CSW01_18115 0.25 -0.6
731,141 - CSW01_18115 0.29 +0.2
731,237 + CSW01_18115 0.45 -0.0
731,250 - CSW01_18115 0.47 +0.0
731,260 + CSW01_18115 0.48 -0.4
731,324 - CSW01_18115 0.58 +0.2
731,357 - CSW01_18115 0.64 +1.5
731,357 - CSW01_18115 0.64 -0.2
731,369 + CSW01_18115 0.66 +0.3
731,386 - CSW01_18115 0.68 -0.5
731,454 + CSW01_18115 0.79 -1.6
731,745 + +0.0
731,796 - -0.5
731,826 - +0.2

Or see this region's nucleotide sequence