Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17925

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17920 and CSW01_17925 are separated by 141 nucleotidesCSW01_17925 and CSW01_17930 are separated by 168 nucleotidesCSW01_17930 and CSW01_17935 are separated by 188 nucleotides CSW01_17920: CSW01_17920 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 692,381 to 693,622 _17920 CSW01_17925: CSW01_17925 - 3-oxoacyl-ACP synthase III, at 693,764 to 694,852 _17925 CSW01_17930: CSW01_17930 - thioredoxin TrxC, at 695,021 to 695,455 _17930 CSW01_17935: CSW01_17935 - MFS transporter, at 695,644 to 696,798 _17935 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 692.799 kb on - strand, within CSW01_17920at 692.815 kb on + strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.993 kb on - strand, within CSW01_17920at 693.091 kb on + strand, within CSW01_17920at 693.114 kb on + strand, within CSW01_17920at 693.135 kb on - strand, within CSW01_17920at 693.136 kb on - strand, within CSW01_17920at 693.137 kb on + strand, within CSW01_17920at 693.145 kb on - strand, within CSW01_17920at 693.198 kb on + strand, within CSW01_17920at 693.206 kb on - strand, within CSW01_17920at 693.279 kb on - strand, within CSW01_17920at 693.308 kb on - strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.355 kb on + strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.396 kb on - strand, within CSW01_17920at 693.442 kb on + strand, within CSW01_17920at 693.528 kb on + strandat 693.636 kb on + strandat 693.694 kb on - strandat 693.706 kb on - strandat 693.812 kb on + strandat 693.820 kb on - strandat 693.820 kb on - strandat 693.904 kb on + strand, within CSW01_17925at 693.905 kb on + strand, within CSW01_17925at 693.905 kb on + strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.913 kb on - strand, within CSW01_17925at 693.964 kb on + strand, within CSW01_17925at 693.980 kb on - strand, within CSW01_17925at 694.014 kb on - strand, within CSW01_17925at 694.037 kb on + strand, within CSW01_17925at 694.072 kb on + strand, within CSW01_17925at 694.081 kb on - strand, within CSW01_17925at 694.230 kb on + strand, within CSW01_17925at 694.238 kb on - strand, within CSW01_17925at 694.352 kb on - strand, within CSW01_17925at 694.357 kb on + strand, within CSW01_17925at 694.360 kb on - strand, within CSW01_17925at 694.374 kb on + strand, within CSW01_17925at 694.384 kb on + strand, within CSW01_17925at 694.390 kb on - strand, within CSW01_17925at 694.394 kb on + strand, within CSW01_17925at 694.407 kb on - strand, within CSW01_17925at 694.450 kb on - strand, within CSW01_17925at 694.519 kb on - strand, within CSW01_17925at 694.627 kb on + strand, within CSW01_17925at 694.648 kb on + strand, within CSW01_17925at 694.731 kb on - strand, within CSW01_17925at 694.731 kb on - strand, within CSW01_17925at 694.812 kb on + strandat 694.812 kb on + strandat 694.836 kb on + strandat 694.894 kb on + strandat 694.901 kb on + strandat 694.935 kb on + strandat 694.942 kb on + strandat 694.980 kb on - strandat 695.058 kb on + strandat 695.058 kb on + strandat 695.067 kb on - strand, within CSW01_17930at 695.067 kb on - strand, within CSW01_17930at 695.218 kb on + strand, within CSW01_17930at 695.218 kb on + strand, within CSW01_17930at 695.221 kb on - strand, within CSW01_17930at 695.224 kb on + strand, within CSW01_17930at 695.226 kb on - strand, within CSW01_17930at 695.269 kb on + strand, within CSW01_17930at 695.276 kb on + strand, within CSW01_17930at 695.284 kb on - strand, within CSW01_17930at 695.355 kb on + strand, within CSW01_17930at 695.392 kb on + strand, within CSW01_17930at 695.496 kb on + strandat 695.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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692,799 - CSW01_17920 0.34 +1.9
692,815 + CSW01_17920 0.35 -0.5
692,823 - CSW01_17920 0.36 +0.3
692,823 - CSW01_17920 0.36 -0.0
692,993 - CSW01_17920 0.49 +0.6
693,091 + CSW01_17920 0.57 +0.4
693,114 + CSW01_17920 0.59 +0.2
693,135 - CSW01_17920 0.61 -1.1
693,136 - CSW01_17920 0.61 +0.1
693,137 + CSW01_17920 0.61 -0.1
693,145 - CSW01_17920 0.62 -1.0
693,198 + CSW01_17920 0.66 -0.5
693,206 - CSW01_17920 0.66 -1.3
693,279 - CSW01_17920 0.72 +0.4
693,308 - CSW01_17920 0.75 -0.1
693,345 + CSW01_17920 0.78 -1.2
693,345 + CSW01_17920 0.78 -0.8
693,355 + CSW01_17920 0.78 -0.5
693,380 - CSW01_17920 0.80 +0.3
693,380 - CSW01_17920 0.80 +1.7
693,380 - CSW01_17920 0.80 -0.3
693,396 - CSW01_17920 0.82 +0.0
693,442 + CSW01_17920 0.85 -0.2
693,528 + -0.6
693,636 + -1.6
693,694 - +0.4
693,706 - -0.7
693,812 + +1.2
693,820 - +0.2
693,820 - +1.2
693,904 + CSW01_17925 0.13 -0.2
693,905 + CSW01_17925 0.13 -0.1
693,905 + CSW01_17925 0.13 -0.6
693,913 - CSW01_17925 0.14 +0.3
693,913 - CSW01_17925 0.14 +0.6
693,913 - CSW01_17925 0.14 -0.5
693,913 - CSW01_17925 0.14 -0.1
693,964 + CSW01_17925 0.18 -0.6
693,980 - CSW01_17925 0.20 -0.4
694,014 - CSW01_17925 0.23 -1.1
694,037 + CSW01_17925 0.25 -0.3
694,072 + CSW01_17925 0.28 -0.5
694,081 - CSW01_17925 0.29 -0.2
694,230 + CSW01_17925 0.43 +0.2
694,238 - CSW01_17925 0.44 +0.1
694,352 - CSW01_17925 0.54 -0.3
694,357 + CSW01_17925 0.54 -1.6
694,360 - CSW01_17925 0.55 -0.1
694,374 + CSW01_17925 0.56 -1.8
694,384 + CSW01_17925 0.57 -0.8
694,390 - CSW01_17925 0.57 -0.4
694,394 + CSW01_17925 0.58 -0.7
694,407 - CSW01_17925 0.59 +0.1
694,450 - CSW01_17925 0.63 +0.7
694,519 - CSW01_17925 0.69 +0.1
694,627 + CSW01_17925 0.79 +0.8
694,648 + CSW01_17925 0.81 +0.2
694,731 - CSW01_17925 0.89 -0.8
694,731 - CSW01_17925 0.89 +0.5
694,812 + -0.3
694,812 + +0.1
694,836 + +0.2
694,894 + +0.1
694,901 + -0.4
694,935 + +0.2
694,942 + -0.0
694,980 - +0.7
695,058 + -0.2
695,058 + +1.2
695,067 - CSW01_17930 0.11 +1.2
695,067 - CSW01_17930 0.11 +0.2
695,218 + CSW01_17930 0.45 +1.0
695,218 + CSW01_17930 0.45 -0.3
695,221 - CSW01_17930 0.46 -0.1
695,224 + CSW01_17930 0.47 -0.4
695,226 - CSW01_17930 0.47 +0.2
695,269 + CSW01_17930 0.57 -1.6
695,276 + CSW01_17930 0.59 -0.3
695,284 - CSW01_17930 0.60 +0.2
695,355 + CSW01_17930 0.77 -1.1
695,392 + CSW01_17930 0.85 -0.1
695,496 + -0.5
695,740 + -0.2

Or see this region's nucleotide sequence