Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17825

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17815 and CSW01_17820 overlap by 8 nucleotidesCSW01_17820 and CSW01_17825 are separated by 2 nucleotidesCSW01_17825 and CSW01_17830 are separated by 698 nucleotides CSW01_17815: CSW01_17815 - recombinase RecF, at 670,760 to 672,931 _17815 CSW01_17820: CSW01_17820 - hypothetical protein, at 672,924 to 673,547 _17820 CSW01_17825: CSW01_17825 - hypothetical protein, at 673,550 to 675,379 _17825 CSW01_17830: CSW01_17830 - hypothetical protein, at 676,078 to 676,383 _17830 Position (kb) 673 674 675 676Strain fitness (log2 ratio) -2 -1 0 1 2 3at 672.639 kb on + strand, within CSW01_17815at 672.639 kb on + strand, within CSW01_17815at 672.647 kb on - strand, within CSW01_17815at 672.647 kb on - strand, within CSW01_17815at 672.658 kb on + strand, within CSW01_17815at 672.666 kb on - strand, within CSW01_17815at 672.700 kb on + strand, within CSW01_17815at 672.737 kb on - strandat 672.999 kb on + strand, within CSW01_17820at 672.999 kb on + strand, within CSW01_17820at 672.999 kb on + strand, within CSW01_17820at 673.142 kb on + strand, within CSW01_17820at 673.181 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.284 kb on - strand, within CSW01_17820at 673.486 kb on + strandat 673.486 kb on + strandat 673.515 kb on - strandat 673.517 kb on + strandat 673.525 kb on - strandat 673.581 kb on + strandat 673.755 kb on + strand, within CSW01_17825at 673.773 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 674.151 kb on + strand, within CSW01_17825at 674.159 kb on - strand, within CSW01_17825at 674.168 kb on + strand, within CSW01_17825at 674.168 kb on + strand, within CSW01_17825at 674.180 kb on + strand, within CSW01_17825at 674.184 kb on - strand, within CSW01_17825at 674.392 kb on - strand, within CSW01_17825at 674.392 kb on - strand, within CSW01_17825at 674.472 kb on - strand, within CSW01_17825at 674.534 kb on + strand, within CSW01_17825at 674.555 kb on + strand, within CSW01_17825at 674.563 kb on - strand, within CSW01_17825at 674.707 kb on - strand, within CSW01_17825at 674.707 kb on - strand, within CSW01_17825at 674.771 kb on + strand, within CSW01_17825at 674.806 kb on + strand, within CSW01_17825at 674.838 kb on + strand, within CSW01_17825at 674.848 kb on + strand, within CSW01_17825at 674.853 kb on + strand, within CSW01_17825at 674.931 kb on + strand, within CSW01_17825at 674.933 kb on + strand, within CSW01_17825at 674.999 kb on + strand, within CSW01_17825at 675.200 kb on - strandat 675.305 kb on - strandat 675.349 kb on - strandat 675.600 kb on - strandat 675.635 kb on + strandat 675.834 kb on + strandat 675.834 kb on + strandat 675.834 kb on + strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.943 kb on + strandat 675.961 kb on + strandat 675.983 kb on - strandat 675.993 kb on + strandat 676.008 kb on - strandat 676.070 kb on + strandat 676.100 kb on - strandat 676.111 kb on + strand, within CSW01_17830at 676.241 kb on + strand, within CSW01_17830at 676.273 kb on + strand, within CSW01_17830at 676.275 kb on - strand, within CSW01_17830

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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672,639 + CSW01_17815 0.87 -2.6
672,639 + CSW01_17815 0.87 +1.1
672,647 - CSW01_17815 0.87 -0.2
672,647 - CSW01_17815 0.87 -0.2
672,658 + CSW01_17815 0.87 +0.7
672,666 - CSW01_17815 0.88 -2.2
672,700 + CSW01_17815 0.89 -0.4
672,737 - +0.9
672,999 + CSW01_17820 0.12 -0.2
672,999 + CSW01_17820 0.12 +0.4
672,999 + CSW01_17820 0.12 +0.9
673,142 + CSW01_17820 0.35 -0.4
673,181 + CSW01_17820 0.41 +0.1
673,276 + CSW01_17820 0.56 +0.4
673,276 + CSW01_17820 0.56 -0.1
673,276 + CSW01_17820 0.56 +0.1
673,284 - CSW01_17820 0.58 -0.2
673,486 + -1.8
673,486 + -0.2
673,515 - -0.4
673,517 + -2.1
673,525 - -0.2
673,581 + -1.2
673,755 + CSW01_17825 0.11 -0.4
673,773 - CSW01_17825 0.12 +0.3
673,800 - CSW01_17825 0.14 -1.9
673,800 - CSW01_17825 0.14 +0.4
673,800 - CSW01_17825 0.14 -0.1
673,800 - CSW01_17825 0.14 +0.9
674,151 + CSW01_17825 0.33 -0.0
674,159 - CSW01_17825 0.33 +0.6
674,168 + CSW01_17825 0.34 -0.2
674,168 + CSW01_17825 0.34 -0.5
674,180 + CSW01_17825 0.34 +0.9
674,184 - CSW01_17825 0.35 +0.6
674,392 - CSW01_17825 0.46 -0.1
674,392 - CSW01_17825 0.46 -1.9
674,472 - CSW01_17825 0.50 +0.5
674,534 + CSW01_17825 0.54 +0.2
674,555 + CSW01_17825 0.55 -0.4
674,563 - CSW01_17825 0.55 -0.5
674,707 - CSW01_17825 0.63 -1.1
674,707 - CSW01_17825 0.63 +0.2
674,771 + CSW01_17825 0.67 -1.3
674,806 + CSW01_17825 0.69 -0.2
674,838 + CSW01_17825 0.70 -0.5
674,848 + CSW01_17825 0.71 +0.4
674,853 + CSW01_17825 0.71 -0.1
674,931 + CSW01_17825 0.75 -0.3
674,933 + CSW01_17825 0.76 +0.3
674,999 + CSW01_17825 0.79 -0.0
675,200 - -0.1
675,305 - -1.9
675,349 - -0.2
675,600 - -1.9
675,635 + -0.3
675,834 + -0.1
675,834 + +0.0
675,834 + -0.4
675,842 - +1.1
675,842 - +1.5
675,842 - +0.8
675,842 - -1.2
675,943 + +0.3
675,961 + -0.6
675,983 - +1.5
675,993 + +0.2
676,008 - -0.0
676,070 + +0.3
676,100 - +0.5
676,111 + CSW01_17830 0.11 -0.6
676,241 + CSW01_17830 0.53 +3.1
676,273 + CSW01_17830 0.64 +0.6
676,275 - CSW01_17830 0.64 +1.5

Or see this region's nucleotide sequence