Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17715

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17710 and CSW01_17715 are separated by 246 nucleotidesCSW01_17715 and CSW01_17720 are separated by 121 nucleotides CSW01_17710: CSW01_17710 - phosphoglycerate transport regulatory protein PgtC, at 646,354 to 647,676 _17710 CSW01_17715: CSW01_17715 - MFS transporter, at 647,923 to 649,302 _17715 CSW01_17720: CSW01_17720 - pyruvate kinase, at 649,424 to 650,884 _17720 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2at 646.992 kb on - strand, within CSW01_17710at 647.029 kb on + strand, within CSW01_17710at 647.108 kb on - strand, within CSW01_17710at 647.137 kb on - strand, within CSW01_17710at 647.139 kb on + strand, within CSW01_17710at 647.144 kb on + strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.233 kb on + strand, within CSW01_17710at 647.241 kb on - strand, within CSW01_17710at 647.253 kb on - strand, within CSW01_17710at 647.364 kb on + strand, within CSW01_17710at 647.426 kb on - strand, within CSW01_17710at 647.442 kb on - strand, within CSW01_17710at 647.506 kb on + strand, within CSW01_17710at 647.527 kb on + strand, within CSW01_17710at 647.527 kb on - strand, within CSW01_17710at 647.573 kb on + strandat 647.578 kb on + strandat 647.612 kb on - strandat 647.612 kb on - strandat 647.616 kb on + strandat 647.729 kb on - strandat 647.734 kb on - strandat 647.812 kb on + strandat 647.912 kb on + strandat 647.967 kb on - strandat 648.121 kb on - strand, within CSW01_17715at 648.255 kb on - strand, within CSW01_17715at 648.264 kb on + strand, within CSW01_17715at 648.294 kb on + strand, within CSW01_17715at 648.309 kb on - strand, within CSW01_17715at 648.315 kb on + strand, within CSW01_17715at 648.329 kb on + strand, within CSW01_17715at 648.334 kb on + strand, within CSW01_17715at 648.337 kb on - strand, within CSW01_17715at 648.358 kb on - strand, within CSW01_17715at 648.368 kb on + strand, within CSW01_17715at 648.376 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.535 kb on - strand, within CSW01_17715at 648.571 kb on + strand, within CSW01_17715at 648.648 kb on - strand, within CSW01_17715at 648.687 kb on + strand, within CSW01_17715at 648.695 kb on - strand, within CSW01_17715at 648.700 kb on + strand, within CSW01_17715at 648.744 kb on - strand, within CSW01_17715at 648.798 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.867 kb on + strand, within CSW01_17715at 648.875 kb on + strand, within CSW01_17715at 648.883 kb on - strand, within CSW01_17715at 648.924 kb on - strand, within CSW01_17715at 648.925 kb on - strand, within CSW01_17715at 648.964 kb on - strand, within CSW01_17715at 649.022 kb on + strand, within CSW01_17715at 649.022 kb on - strand, within CSW01_17715at 649.123 kb on - strand, within CSW01_17715at 649.185 kb on - strandat 649.188 kb on - strandat 649.228 kb on - strandat 649.457 kb on - strandat 649.667 kb on + strand, within CSW01_17720at 649.675 kb on - strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.800 kb on - strand, within CSW01_17720at 649.822 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 650.057 kb on - strand, within CSW01_17720at 650.120 kb on + strand, within CSW01_17720at 650.142 kb on + strand, within CSW01_17720at 650.150 kb on - strand, within CSW01_17720at 650.245 kb on + strand, within CSW01_17720at 650.247 kb on - strand, within CSW01_17720at 650.300 kb on + strand, within CSW01_17720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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646,992 - CSW01_17710 0.48 +0.8
647,029 + CSW01_17710 0.51 +1.0
647,108 - CSW01_17710 0.57 +0.3
647,137 - CSW01_17710 0.59 -1.1
647,139 + CSW01_17710 0.59 -0.3
647,144 + CSW01_17710 0.60 +0.7
647,152 - CSW01_17710 0.60 +0.3
647,152 - CSW01_17710 0.60 -0.5
647,233 + CSW01_17710 0.66 +0.5
647,241 - CSW01_17710 0.67 -0.4
647,253 - CSW01_17710 0.68 +0.2
647,364 + CSW01_17710 0.76 -0.0
647,426 - CSW01_17710 0.81 +0.4
647,442 - CSW01_17710 0.82 +0.4
647,506 + CSW01_17710 0.87 +0.7
647,527 + CSW01_17710 0.89 +0.1
647,527 - CSW01_17710 0.89 -1.4
647,573 + +0.1
647,578 + -0.7
647,612 - -1.9
647,612 - +0.1
647,616 + +0.6
647,729 - -0.0
647,734 - -1.3
647,812 + -0.4
647,912 + +0.1
647,967 - -1.1
648,121 - CSW01_17715 0.14 +0.4
648,255 - CSW01_17715 0.24 +0.3
648,264 + CSW01_17715 0.25 -1.0
648,294 + CSW01_17715 0.27 -0.1
648,309 - CSW01_17715 0.28 +0.8
648,315 + CSW01_17715 0.28 -0.3
648,329 + CSW01_17715 0.29 -1.9
648,334 + CSW01_17715 0.30 +1.0
648,337 - CSW01_17715 0.30 +0.3
648,358 - CSW01_17715 0.32 -0.1
648,368 + CSW01_17715 0.32 +0.1
648,376 - CSW01_17715 0.33 +0.9
648,489 - CSW01_17715 0.41 +0.7
648,489 - CSW01_17715 0.41 +1.8
648,535 - CSW01_17715 0.44 +1.6
648,571 + CSW01_17715 0.47 -0.3
648,648 - CSW01_17715 0.53 +1.9
648,687 + CSW01_17715 0.55 +1.3
648,695 - CSW01_17715 0.56 +0.1
648,700 + CSW01_17715 0.56 +0.7
648,744 - CSW01_17715 0.59 +0.4
648,798 + CSW01_17715 0.63 +1.7
648,855 + CSW01_17715 0.68 -0.3
648,855 + CSW01_17715 0.68 +0.9
648,863 - CSW01_17715 0.68 +0.7
648,863 - CSW01_17715 0.68 -1.4
648,867 + CSW01_17715 0.68 +0.1
648,875 + CSW01_17715 0.69 -0.2
648,883 - CSW01_17715 0.70 -1.2
648,924 - CSW01_17715 0.73 +0.3
648,925 - CSW01_17715 0.73 +0.1
648,964 - CSW01_17715 0.75 -0.1
649,022 + CSW01_17715 0.80 -0.0
649,022 - CSW01_17715 0.80 +1.1
649,123 - CSW01_17715 0.87 -0.7
649,185 - +0.1
649,188 - -0.7
649,228 - +1.7
649,457 - +0.1
649,667 + CSW01_17720 0.17 +0.2
649,675 - CSW01_17720 0.17 +0.6
649,742 + CSW01_17720 0.22 -0.4
649,742 + CSW01_17720 0.22 +0.6
649,742 + CSW01_17720 0.22 -2.7
649,742 + CSW01_17720 0.22 -0.9
649,750 - CSW01_17720 0.22 +0.2
649,750 - CSW01_17720 0.22 -0.1
649,750 - CSW01_17720 0.22 +0.3
649,750 - CSW01_17720 0.22 -1.3
649,750 - CSW01_17720 0.22 -0.4
649,750 - CSW01_17720 0.22 -0.6
649,750 - CSW01_17720 0.22 +1.7
649,750 - CSW01_17720 0.22 -0.1
649,752 + CSW01_17720 0.22 +0.3
649,752 + CSW01_17720 0.22 -2.0
649,752 + CSW01_17720 0.22 +2.0
649,760 - CSW01_17720 0.23 +0.5
649,760 - CSW01_17720 0.23 -0.4
649,800 - CSW01_17720 0.26 +0.7
649,822 + CSW01_17720 0.27 -0.0
649,853 + CSW01_17720 0.29 +1.5
649,853 + CSW01_17720 0.29 -0.7
650,057 - CSW01_17720 0.43 -0.1
650,120 + CSW01_17720 0.48 +1.4
650,142 + CSW01_17720 0.49 +0.2
650,150 - CSW01_17720 0.50 -0.2
650,245 + CSW01_17720 0.56 +0.0
650,247 - CSW01_17720 0.56 -0.1
650,300 + CSW01_17720 0.60 -0.2

Or see this region's nucleotide sequence