Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17300

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17295 and CSW01_17300 are separated by 2 nucleotidesCSW01_17300 and CSW01_17305 are separated by 183 nucleotidesCSW01_17305 and CSW01_17310 are separated by 21 nucleotides CSW01_17295: CSW01_17295 - molybdopterin molybdotransferase, at 550,218 to 551,453 _17295 CSW01_17300: CSW01_17300 - molybdopterin-synthase adenylyltransferase MoeB, at 551,456 to 552,220 _17300 CSW01_17305: CSW01_17305 - glyoxalase, at 552,404 to 552,772 _17305 CSW01_17310: CSW01_17310 - 3-mercaptopyruvate sulfurtransferase, at 552,794 to 553,624 _17310 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1 2 3at 550.497 kb on + strand, within CSW01_17295at 550.589 kb on + strand, within CSW01_17295at 550.620 kb on - strand, within CSW01_17295at 550.661 kb on + strand, within CSW01_17295at 550.729 kb on + strand, within CSW01_17295at 550.790 kb on + strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.952 kb on - strand, within CSW01_17295at 551.066 kb on + strand, within CSW01_17295at 551.105 kb on + strand, within CSW01_17295at 551.115 kb on + strand, within CSW01_17295at 551.139 kb on + strand, within CSW01_17295at 551.147 kb on - strand, within CSW01_17295at 551.147 kb on - strand, within CSW01_17295at 551.231 kb on + strand, within CSW01_17295at 551.286 kb on - strand, within CSW01_17295at 551.332 kb on + strandat 551.376 kb on - strandat 551.432 kb on + strandat 551.437 kb on + strandat 551.437 kb on + strandat 551.440 kb on - strandat 551.440 kb on - strandat 551.440 kb on - strandat 551.445 kb on - strandat 551.450 kb on - strandat 551.489 kb on - strandat 551.544 kb on + strand, within CSW01_17300at 551.556 kb on + strand, within CSW01_17300at 551.569 kb on - strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.590 kb on - strand, within CSW01_17300at 551.672 kb on - strand, within CSW01_17300at 551.673 kb on - strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.777 kb on + strand, within CSW01_17300at 551.786 kb on + strand, within CSW01_17300at 551.794 kb on - strand, within CSW01_17300at 551.834 kb on + strand, within CSW01_17300at 551.862 kb on + strand, within CSW01_17300at 551.870 kb on - strand, within CSW01_17300at 551.872 kb on + strand, within CSW01_17300at 551.955 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 552.009 kb on - strand, within CSW01_17300at 552.019 kb on + strand, within CSW01_17300at 552.024 kb on + strand, within CSW01_17300at 552.027 kb on - strand, within CSW01_17300at 552.032 kb on - strand, within CSW01_17300at 552.043 kb on - strand, within CSW01_17300at 552.070 kb on + strand, within CSW01_17300at 552.079 kb on - strand, within CSW01_17300at 552.087 kb on + strand, within CSW01_17300at 552.114 kb on + strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.310 kb on - strandat 552.355 kb on + strandat 552.361 kb on + strandat 552.409 kb on - strandat 552.489 kb on + strand, within CSW01_17305at 552.538 kb on - strand, within CSW01_17305at 552.561 kb on + strand, within CSW01_17305at 552.586 kb on - strand, within CSW01_17305at 552.586 kb on - strand, within CSW01_17305at 552.589 kb on + strand, within CSW01_17305at 552.637 kb on + strand, within CSW01_17305at 552.637 kb on + strand, within CSW01_17305at 552.645 kb on - strand, within CSW01_17305at 552.683 kb on + strand, within CSW01_17305at 552.697 kb on + strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.993 kb on + strand, within CSW01_17310at 552.993 kb on + strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.006 kb on + strand, within CSW01_17310at 553.014 kb on - strand, within CSW01_17310at 553.138 kb on - strand, within CSW01_17310at 553.189 kb on + strand, within CSW01_17310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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550,497 + CSW01_17295 0.23 -0.5
550,589 + CSW01_17295 0.30 +0.1
550,620 - CSW01_17295 0.33 +0.0
550,661 + CSW01_17295 0.36 -0.3
550,729 + CSW01_17295 0.41 -0.2
550,790 + CSW01_17295 0.46 +0.2
550,798 - CSW01_17295 0.47 +0.2
550,798 - CSW01_17295 0.47 -0.6
550,798 - CSW01_17295 0.47 -2.2
550,952 - CSW01_17295 0.59 -0.9
551,066 + CSW01_17295 0.69 -0.3
551,105 + CSW01_17295 0.72 +0.0
551,115 + CSW01_17295 0.73 -0.7
551,139 + CSW01_17295 0.75 -0.5
551,147 - CSW01_17295 0.75 +1.0
551,147 - CSW01_17295 0.75 -1.3
551,231 + CSW01_17295 0.82 -1.3
551,286 - CSW01_17295 0.86 -0.1
551,332 + -0.4
551,376 - +0.5
551,432 + +0.2
551,437 + +1.4
551,437 + +0.9
551,440 - -0.7
551,440 - +0.1
551,440 - +1.2
551,445 - +0.2
551,450 - -0.2
551,489 - -0.1
551,544 + CSW01_17300 0.12 -0.4
551,556 + CSW01_17300 0.13 +0.6
551,569 - CSW01_17300 0.15 +0.7
551,582 + CSW01_17300 0.16 +3.4
551,582 + CSW01_17300 0.16 -1.0
551,582 + CSW01_17300 0.16 -0.2
551,590 - CSW01_17300 0.18 +0.3
551,672 - CSW01_17300 0.28 -0.2
551,673 - CSW01_17300 0.28 -0.1
551,684 + CSW01_17300 0.30 -0.2
551,684 + CSW01_17300 0.30 -0.0
551,684 + CSW01_17300 0.30 +0.1
551,684 + CSW01_17300 0.30 +0.8
551,692 - CSW01_17300 0.31 +0.6
551,692 - CSW01_17300 0.31 +1.5
551,692 - CSW01_17300 0.31 +0.7
551,777 + CSW01_17300 0.42 -0.4
551,786 + CSW01_17300 0.43 +0.7
551,794 - CSW01_17300 0.44 -0.1
551,834 + CSW01_17300 0.49 +0.5
551,862 + CSW01_17300 0.53 +0.1
551,870 - CSW01_17300 0.54 -0.5
551,872 + CSW01_17300 0.54 +0.4
551,955 + CSW01_17300 0.65 -0.1
551,974 + CSW01_17300 0.68 -0.4
551,974 + CSW01_17300 0.68 +1.0
552,009 - CSW01_17300 0.72 -0.4
552,019 + CSW01_17300 0.74 -0.1
552,024 + CSW01_17300 0.74 +1.5
552,027 - CSW01_17300 0.75 +0.1
552,032 - CSW01_17300 0.75 -0.1
552,043 - CSW01_17300 0.77 +0.4
552,070 + CSW01_17300 0.80 +0.1
552,079 - CSW01_17300 0.81 +0.5
552,087 + CSW01_17300 0.82 -0.6
552,114 + CSW01_17300 0.86 -0.1
552,122 - CSW01_17300 0.87 +0.4
552,122 - CSW01_17300 0.87 -0.1
552,310 - +0.1
552,355 + +0.4
552,361 + +0.3
552,409 - +0.5
552,489 + CSW01_17305 0.23 +1.1
552,538 - CSW01_17305 0.36 -0.4
552,561 + CSW01_17305 0.43 +0.5
552,586 - CSW01_17305 0.49 +0.7
552,586 - CSW01_17305 0.49 -0.4
552,589 + CSW01_17305 0.50 -1.0
552,637 + CSW01_17305 0.63 -0.5
552,637 + CSW01_17305 0.63 -0.2
552,645 - CSW01_17305 0.65 +0.1
552,683 + CSW01_17305 0.76 +1.1
552,697 + CSW01_17305 0.79 +0.3
552,705 - CSW01_17305 0.82 +0.3
552,705 - CSW01_17305 0.82 -0.3
552,705 - CSW01_17305 0.82 +0.1
552,993 + CSW01_17310 0.24 -0.5
552,993 + CSW01_17310 0.24 -0.1
553,001 - CSW01_17310 0.25 -0.3
553,001 - CSW01_17310 0.25 -0.3
553,006 + CSW01_17310 0.26 -0.3
553,014 - CSW01_17310 0.26 -1.3
553,138 - CSW01_17310 0.41 +1.7
553,189 + CSW01_17310 0.48 +0.5

Or see this region's nucleotide sequence