Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16635 and CSW01_16640 are separated by 62 nucleotides CSW01_16640 and CSW01_16645 overlap by 4 nucleotides CSW01_16645 and CSW01_16650 are separated by 69 nucleotides CSW01_16650 and CSW01_16655 are separated by 56 nucleotides CSW01_16655 and CSW01_16660 are separated by 151 nucleotides
CSW01_16635: CSW01_16635 - hypothetical protein, at 419,810 to 419,905
_16635
CSW01_16640: CSW01_16640 - N-acetyltransferase, at 419,968 to 420,465
_16640
CSW01_16645: CSW01_16645 - DUF1778 domain-containing protein, at 420,462 to 420,734
_16645
CSW01_16650: CSW01_16650 - hypothetical protein, at 420,804 to 420,908
_16650
CSW01_16655: CSW01_16655 - hypothetical protein, at 420,965 to 421,633
_16655
CSW01_16660: CSW01_16660 - hypothetical protein, at 421,785 to 422,072
_16660
Position (kb) 420
421 Strain fitness (log2 ratio) -1
0
1 at 419.870 kb on + strand, within CSW01_16635 at 420.933 kb on + strand at 421.039 kb on + strand, within CSW01_16655 at 421.092 kb on + strand, within CSW01_16655 at 421.125 kb on + strand, within CSW01_16655 at 421.172 kb on + strand, within CSW01_16655 at 421.532 kb on - strand, within CSW01_16655 at 421.538 kb on + strand, within CSW01_16655 at 421.656 kb on - strand at 421.775 kb on + strand at 421.783 kb on - strand at 421.783 kb on - strand at 421.898 kb on - strand, within CSW01_16660
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 419,870 + CSW01_16635 0.62 -0.1 420,933 + -0.8 421,039 + CSW01_16655 0.11 +0.9 421,092 + CSW01_16655 0.19 +0.1 421,125 + CSW01_16655 0.24 +0.5 421,172 + CSW01_16655 0.31 +0.5 421,532 - CSW01_16655 0.85 +0.1 421,538 + CSW01_16655 0.86 -0.2 421,656 - -0.0 421,775 + +0.7 421,783 - +0.2 421,783 - +0.1 421,898 - CSW01_16660 0.39 -0.2
Or see this region's nucleotide sequence