Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16590

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16580 and CSW01_16585 are separated by 22 nucleotidesCSW01_16585 and CSW01_16590 are separated by 170 nucleotidesCSW01_16590 and CSW01_16595 overlap by 1 nucleotidesCSW01_16595 and CSW01_16600 are separated by 2 nucleotidesCSW01_16600 and CSW01_16605 are separated by 74 nucleotides CSW01_16580: CSW01_16580 - IS5 family transposase ISVch5, at 414,782 to 415,762 _16580 CSW01_16585: CSW01_16585 - acetyltransferase, at 415,785 to 416,102 _16585 CSW01_16590: CSW01_16590 - N-acetyltransferase, at 416,273 to 416,965 _16590 CSW01_16595: CSW01_16595 - type II toxin-antitoxin system death-on-curing family toxin, at 416,965 to 417,366 _16595 CSW01_16600: CSW01_16600 - DUF3265 domain-containing protein, at 417,369 to 417,479 _16600 CSW01_16605: CSW01_16605 - VOC family protein, at 417,554 to 417,967 _16605 Position (kb) 416 417Strain fitness (log2 ratio) -1 0 1at 415.870 kb on - strand, within CSW01_16585at 415.880 kb on - strand, within CSW01_16585at 416.759 kb on + strand, within CSW01_16590at 417.136 kb on + strand, within CSW01_16595at 417.144 kb on - strand, within CSW01_16595at 417.196 kb on + strand, within CSW01_16595at 417.196 kb on + strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.282 kb on - strand, within CSW01_16595at 417.417 kb on + strand, within CSW01_16600at 417.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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415,870 - CSW01_16585 0.27 +0.3
415,880 - CSW01_16585 0.30 +1.1
416,759 + CSW01_16590 0.70 -0.4
417,136 + CSW01_16595 0.43 -0.3
417,144 - CSW01_16595 0.45 +0.1
417,196 + CSW01_16595 0.57 +0.6
417,196 + CSW01_16595 0.57 -1.3
417,204 - CSW01_16595 0.59 -0.7
417,204 - CSW01_16595 0.59 +0.4
417,204 - CSW01_16595 0.59 -0.1
417,282 - CSW01_16595 0.79 -0.4
417,417 + CSW01_16600 0.43 -1.0
417,481 - -0.9

Or see this region's nucleotide sequence