Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15995

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15990 and CSW01_15995 are separated by 738 nucleotidesCSW01_15995 and CSW01_16000 are separated by 193 nucleotidesCSW01_16000 and CSW01_16005 are separated by 0 nucleotides CSW01_15990: CSW01_15990 - hypothetical protein, at 362,100 to 362,447 _15990 CSW01_15995: CSW01_15995 - DUF645 domain-containing protein, at 363,186 to 363,338 _15995 CSW01_16000: CSW01_16000 - type II toxin-antitoxin system RelE/ParE family toxin, at 363,532 to 363,867 _16000 CSW01_16005: CSW01_16005 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 363,868 to 364,110 _16005 Position (kb) 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1at 362.203 kb on - strand, within CSW01_15990at 362.342 kb on + strand, within CSW01_15990at 362.462 kb on - strandat 362.462 kb on - strandat 362.474 kb on - strandat 362.672 kb on + strandat 362.742 kb on + strandat 362.748 kb on - strandat 362.750 kb on + strandat 362.793 kb on - strandat 362.862 kb on + strandat 362.862 kb on + strandat 362.870 kb on - strandat 362.906 kb on - strandat 362.952 kb on - strandat 362.981 kb on - strandat 363.197 kb on + strandat 363.305 kb on - strand, within CSW01_15995at 363.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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362,203 - CSW01_15990 0.30 +0.0
362,342 + CSW01_15990 0.70 -0.1
362,462 - +0.2
362,462 - +0.5
362,474 - +1.1
362,672 + -0.4
362,742 + -0.5
362,748 - -1.0
362,750 + -1.3
362,793 - +0.2
362,862 + -0.3
362,862 + -3.0
362,870 - -0.6
362,906 - -0.8
362,952 - +1.5
362,981 - -1.4
363,197 + -0.8
363,305 - CSW01_15995 0.78 +1.0
363,413 - -0.3

Or see this region's nucleotide sequence