Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15835 and CSW01_15840 are separated by 113 nucleotides CSW01_15840 and CSW01_15845 are separated by 3 nucleotides CSW01_15845 and CSW01_15850 are separated by 59 nucleotides CSW01_15850 and CSW01_15855 are separated by 149 nucleotides CSW01_15855 and CSW01_15860 are separated by 27 nucleotides CSW01_15860 and CSW01_15865 are separated by 183 nucleotides
CSW01_15835: CSW01_15835 - LysE family translocator, at 344,748 to 345,374
_15835
CSW01_15840: CSW01_15840 - hypothetical protein, at 345,488 to 346,195
_15840
CSW01_15845: CSW01_15845 - DUF3265 domain-containing protein, at 346,199 to 346,315
_15845
CSW01_15850: CSW01_15850 - hypothetical protein, at 346,375 to 346,536
_15850
CSW01_15855: CSW01_15855 - acetyltransferase, at 346,686 to 346,865
_15855
CSW01_15860: CSW01_15860 - DUF645 domain-containing protein, at 346,893 to 347,072
_15860
CSW01_15865: CSW01_15865 - DUF3465 domain-containing protein, at 347,256 to 347,681
_15865
Position (kb) 346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.236 kb on + strand, within CSW01_15835 at 345.236 kb on + strand, within CSW01_15835 at 345.236 kb on + strand, within CSW01_15835 at 345.236 kb on - strand, within CSW01_15835 at 345.238 kb on + strand, within CSW01_15835 at 345.238 kb on + strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.244 kb on - strand, within CSW01_15835 at 345.246 kb on + strand, within CSW01_15835 at 345.306 kb on + strand, within CSW01_15835 at 345.314 kb on - strand at 345.327 kb on - strand at 345.364 kb on + strand at 345.369 kb on + strand at 345.372 kb on - strand at 345.401 kb on + strand at 345.482 kb on + strand at 345.490 kb on - strand at 345.544 kb on + strand at 345.549 kb on + strand at 345.549 kb on + strand at 345.597 kb on - strand, within CSW01_15840 at 345.628 kb on + strand, within CSW01_15840 at 345.628 kb on + strand, within CSW01_15840 at 345.628 kb on + strand, within CSW01_15840 at 345.670 kb on + strand, within CSW01_15840 at 345.769 kb on + strand, within CSW01_15840 at 345.938 kb on - strand, within CSW01_15840 at 345.961 kb on + strand, within CSW01_15840 at 345.983 kb on + strand, within CSW01_15840 at 346.071 kb on - strand, within CSW01_15840 at 346.076 kb on - strand, within CSW01_15840 at 346.086 kb on - strand, within CSW01_15840 at 346.091 kb on - strand, within CSW01_15840 at 346.099 kb on - strand, within CSW01_15840 at 346.215 kb on + strand, within CSW01_15845 at 346.215 kb on + strand, within CSW01_15845 at 346.223 kb on - strand, within CSW01_15845 at 346.253 kb on + strand, within CSW01_15845 at 346.261 kb on - strand, within CSW01_15845 at 346.281 kb on - strand, within CSW01_15845 at 346.306 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.936 kb on + strand, within CSW01_15860 at 346.949 kb on + strand, within CSW01_15860 at 346.993 kb on + strand, within CSW01_15860 at 347.030 kb on + strand, within CSW01_15860
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 345,236 + CSW01_15835 0.78 -0.5 345,236 + CSW01_15835 0.78 -0.3 345,236 + CSW01_15835 0.78 +0.4 345,236 - CSW01_15835 0.78 +0.2 345,238 + CSW01_15835 0.78 +1.2 345,238 + CSW01_15835 0.78 +2.0 345,244 - CSW01_15835 0.79 -0.1 345,244 - CSW01_15835 0.79 -2.7 345,244 - CSW01_15835 0.79 +0.4 345,244 - CSW01_15835 0.79 -0.6 345,244 - CSW01_15835 0.79 -0.6 345,244 - CSW01_15835 0.79 +1.9 345,246 + CSW01_15835 0.79 +0.4 345,306 + CSW01_15835 0.89 +0.5 345,314 - +1.7 345,327 - -0.1 345,364 + +0.2 345,369 + +0.8 345,372 - +0.6 345,401 + +0.3 345,482 + -0.8 345,490 - +0.5 345,544 + -0.4 345,549 + -0.3 345,549 + +0.1 345,597 - CSW01_15840 0.15 +0.2 345,628 + CSW01_15840 0.20 -0.6 345,628 + CSW01_15840 0.20 +0.9 345,628 + CSW01_15840 0.20 +1.2 345,670 + CSW01_15840 0.26 +0.3 345,769 + CSW01_15840 0.40 +1.2 345,938 - CSW01_15840 0.64 -1.0 345,961 + CSW01_15840 0.67 +0.5 345,983 + CSW01_15840 0.70 -0.1 346,071 - CSW01_15840 0.82 -0.0 346,076 - CSW01_15840 0.83 -0.2 346,086 - CSW01_15840 0.84 -0.4 346,091 - CSW01_15840 0.85 -0.1 346,099 - CSW01_15840 0.86 -0.1 346,215 + CSW01_15845 0.14 +1.2 346,215 + CSW01_15845 0.14 +0.1 346,223 - CSW01_15845 0.21 +0.2 346,253 + CSW01_15845 0.46 +0.2 346,261 - CSW01_15845 0.53 +1.2 346,281 - CSW01_15845 0.70 -0.4 346,306 - -0.1 346,316 - +0.4 346,316 - -0.5 346,316 - +0.5 346,316 - +0.9 346,316 - -1.2 346,316 - -0.3 346,316 - +0.2 346,316 - +1.6 346,936 + CSW01_15860 0.24 +0.8 346,949 + CSW01_15860 0.31 +1.0 346,993 + CSW01_15860 0.56 +0.1 347,030 + CSW01_15860 0.76 +0.5
Or see this region's nucleotide sequence