Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15340

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15330 and CSW01_15335 are separated by 143 nucleotidesCSW01_15335 and CSW01_15340 are separated by 36 nucleotidesCSW01_15340 and CSW01_15345 are separated by 387 nucleotides CSW01_15330: CSW01_15330 - glycine dehydrogenase (decarboxylating), at 292,439 to 295,303 _15330 CSW01_15335: CSW01_15335 - glycine cleavage system protein H, at 295,447 to 295,827 _15335 CSW01_15340: CSW01_15340 - serine hydroxymethyltransferase, at 295,864 to 297,171 _15340 CSW01_15345: CSW01_15345 - XRE family transcriptional regulator, at 297,559 to 298,182 _15345 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 294.923 kb on - strand, within CSW01_15330at 294.989 kb on - strand, within CSW01_15330at 295.034 kb on + strandat 295.043 kb on - strandat 295.059 kb on + strandat 295.110 kb on + strandat 295.116 kb on - strandat 295.118 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.177 kb on - strandat 295.276 kb on + strandat 295.460 kb on + strandat 295.479 kb on - strandat 295.501 kb on - strand, within CSW01_15335at 295.544 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.569 kb on - strand, within CSW01_15335at 295.612 kb on + strand, within CSW01_15335at 295.667 kb on - strand, within CSW01_15335at 295.714 kb on + strand, within CSW01_15335at 295.810 kb on + strandat 295.891 kb on - strandat 295.925 kb on + strandat 295.926 kb on + strandat 295.938 kb on + strandat 295.946 kb on - strandat 295.992 kb on + strandat 296.009 kb on - strand, within CSW01_15340at 296.075 kb on - strand, within CSW01_15340at 296.113 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.146 kb on + strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.323 kb on - strand, within CSW01_15340at 296.340 kb on - strand, within CSW01_15340at 296.357 kb on + strand, within CSW01_15340at 296.365 kb on - strand, within CSW01_15340at 296.380 kb on - strand, within CSW01_15340at 296.391 kb on + strand, within CSW01_15340at 296.482 kb on + strand, within CSW01_15340at 296.490 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.557 kb on - strand, within CSW01_15340at 296.603 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.822 kb on + strand, within CSW01_15340at 296.830 kb on - strand, within CSW01_15340at 296.846 kb on + strand, within CSW01_15340at 296.898 kb on - strand, within CSW01_15340at 296.912 kb on - strand, within CSW01_15340at 297.142 kb on + strandat 297.190 kb on - strandat 297.212 kb on - strandat 297.278 kb on + strandat 297.278 kb on + strandat 297.278 kb on + strandat 297.285 kb on - strandat 297.285 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.298 kb on + strandat 297.301 kb on - strandat 297.335 kb on - strandat 297.346 kb on + strandat 297.346 kb on + strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.445 kb on - strandat 297.631 kb on - strand, within CSW01_15345at 297.683 kb on + strand, within CSW01_15345at 297.702 kb on + strand, within CSW01_15345at 297.709 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.722 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.900 kb on - strand, within CSW01_15345at 297.920 kb on + strand, within CSW01_15345at 297.928 kb on - strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.985 kb on + strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 298.020 kb on - strand, within CSW01_15345at 298.087 kb on + strand, within CSW01_15345at 298.124 kb on - strandat 298.160 kb on + strandat 298.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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294,923 - CSW01_15330 0.87 +0.2
294,989 - CSW01_15330 0.89 +0.5
295,034 + +0.7
295,043 - -0.8
295,059 + +0.5
295,110 + +0.8
295,116 - +1.8
295,118 - +0.4
295,162 - +0.7
295,162 - +0.3
295,162 - +1.2
295,177 - +0.3
295,276 + -0.2
295,460 + +0.1
295,479 - +0.1
295,501 - CSW01_15335 0.14 +0.2
295,544 + CSW01_15335 0.25 -0.4
295,566 + CSW01_15335 0.31 -3.1
295,566 + CSW01_15335 0.31 +0.1
295,566 + CSW01_15335 0.31 -0.7
295,569 - CSW01_15335 0.32 +0.2
295,612 + CSW01_15335 0.43 +1.5
295,667 - CSW01_15335 0.58 -0.1
295,714 + CSW01_15335 0.70 -1.1
295,810 + -0.4
295,891 - -0.3
295,925 + +0.5
295,926 + +1.1
295,938 + -0.6
295,946 - +1.2
295,992 + -1.5
296,009 - CSW01_15340 0.11 +0.6
296,075 - CSW01_15340 0.16 -0.1
296,113 + CSW01_15340 0.19 -1.6
296,119 + CSW01_15340 0.19 +0.5
296,119 + CSW01_15340 0.19 +1.5
296,119 + CSW01_15340 0.19 +0.4
296,127 - CSW01_15340 0.20 +0.5
296,127 - CSW01_15340 0.20 +0.8
296,127 - CSW01_15340 0.20 +0.9
296,146 + CSW01_15340 0.22 -0.4
296,291 - CSW01_15340 0.33 -0.7
296,291 - CSW01_15340 0.33 +1.4
296,291 - CSW01_15340 0.33 +0.6
296,323 - CSW01_15340 0.35 +0.8
296,340 - CSW01_15340 0.36 +0.1
296,357 + CSW01_15340 0.38 +1.2
296,365 - CSW01_15340 0.38 +1.1
296,380 - CSW01_15340 0.39 +1.3
296,391 + CSW01_15340 0.40 -0.1
296,482 + CSW01_15340 0.47 -0.4
296,490 - CSW01_15340 0.48 -0.1
296,539 - CSW01_15340 0.52 +0.7
296,539 - CSW01_15340 0.52 +0.6
296,539 - CSW01_15340 0.52 +0.1
296,557 - CSW01_15340 0.53 +0.2
296,603 - CSW01_15340 0.56 +0.8
296,703 - CSW01_15340 0.64 +0.1
296,703 - CSW01_15340 0.64 -0.1
296,822 + CSW01_15340 0.73 +0.3
296,830 - CSW01_15340 0.74 +0.7
296,846 + CSW01_15340 0.75 +0.6
296,898 - CSW01_15340 0.79 -0.1
296,912 - CSW01_15340 0.80 +0.7
297,142 + +0.5
297,190 - -0.2
297,212 - +0.0
297,278 + +1.6
297,278 + -0.6
297,278 + -2.1
297,285 - -0.2
297,285 - +0.5
297,286 - +0.4
297,286 - +0.3
297,286 - +0.4
297,286 - +0.8
297,298 + +1.5
297,301 - -0.6
297,335 - +1.5
297,346 + -0.0
297,346 + +0.4
297,354 - +0.7
297,354 - +0.4
297,354 - +1.6
297,354 - -0.4
297,445 - +0.6
297,631 - CSW01_15345 0.12 +0.3
297,683 + CSW01_15345 0.20 +0.4
297,702 + CSW01_15345 0.23 -1.1
297,709 + CSW01_15345 0.24 -0.3
297,719 + CSW01_15345 0.26 +0.4
297,719 + CSW01_15345 0.26 -0.2
297,719 + CSW01_15345 0.26 -0.1
297,719 + CSW01_15345 0.26 +0.7
297,719 + CSW01_15345 0.26 +0.7
297,722 - CSW01_15345 0.26 -0.4
297,727 - CSW01_15345 0.27 -0.4
297,727 - CSW01_15345 0.27 -0.8
297,727 - CSW01_15345 0.27 +3.3
297,727 - CSW01_15345 0.27 -0.6
297,727 - CSW01_15345 0.27 +0.2
297,762 + CSW01_15345 0.33 -0.4
297,762 + CSW01_15345 0.33 +0.5
297,770 - CSW01_15345 0.34 -0.5
297,770 - CSW01_15345 0.34 -0.3
297,900 - CSW01_15345 0.55 -0.1
297,920 + CSW01_15345 0.58 +0.6
297,928 - CSW01_15345 0.59 +0.2
297,969 + CSW01_15345 0.66 -0.1
297,969 + CSW01_15345 0.66 -0.9
297,985 + CSW01_15345 0.68 +0.8
297,985 - CSW01_15345 0.68 -1.0
297,985 - CSW01_15345 0.68 +0.3
298,020 - CSW01_15345 0.74 +0.1
298,087 + CSW01_15345 0.85 +0.1
298,124 - +0.2
298,160 + +1.9
298,168 - +0.4

Or see this region's nucleotide sequence