Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14560

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14555 and CSW01_14560 are separated by 2 nucleotidesCSW01_14560 and CSW01_14565 are separated by 5 nucleotides CSW01_14555: CSW01_14555 - type VI secretion system contractile sheath large subunit, at 117,391 to 118,869 _14555 CSW01_14560: CSW01_14560 - type VI secretion system baseplate subunit TssE, at 118,872 to 119,309 _14560 CSW01_14565: CSW01_14565 - type VI secretion system baseplate subunit TssF, at 119,315 to 121,084 _14565 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1 2at 117.981 kb on - strand, within CSW01_14555at 118.022 kb on - strand, within CSW01_14555at 118.182 kb on + strand, within CSW01_14555at 118.220 kb on - strand, within CSW01_14555at 118.220 kb on - strand, within CSW01_14555at 118.222 kb on + strand, within CSW01_14555at 118.222 kb on + strand, within CSW01_14555at 118.230 kb on - strand, within CSW01_14555at 118.230 kb on - strand, within CSW01_14555at 118.246 kb on + strand, within CSW01_14555at 118.324 kb on + strand, within CSW01_14555at 118.459 kb on + strand, within CSW01_14555at 118.469 kb on + strand, within CSW01_14555at 118.469 kb on - strand, within CSW01_14555at 118.544 kb on + strand, within CSW01_14555at 118.600 kb on + strand, within CSW01_14555at 118.687 kb on + strand, within CSW01_14555at 118.713 kb on + strand, within CSW01_14555at 118.751 kb on - strandat 118.887 kb on + strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.937 kb on + strand, within CSW01_14560at 118.937 kb on + strand, within CSW01_14560at 118.957 kb on + strand, within CSW01_14560at 118.963 kb on + strand, within CSW01_14560at 118.971 kb on - strand, within CSW01_14560at 119.004 kb on + strand, within CSW01_14560at 119.092 kb on + strand, within CSW01_14560at 119.092 kb on + strand, within CSW01_14560at 119.100 kb on - strand, within CSW01_14560at 119.134 kb on + strand, within CSW01_14560at 119.154 kb on + strand, within CSW01_14560at 119.171 kb on + strand, within CSW01_14560at 119.179 kb on - strand, within CSW01_14560at 119.189 kb on - strand, within CSW01_14560at 119.189 kb on - strand, within CSW01_14560at 119.199 kb on - strand, within CSW01_14560at 119.206 kb on + strand, within CSW01_14560at 119.303 kb on + strandat 119.311 kb on - strandat 119.311 kb on - strandat 119.367 kb on + strandat 119.368 kb on - strandat 119.427 kb on + strandat 119.522 kb on + strand, within CSW01_14565at 119.561 kb on - strand, within CSW01_14565at 119.571 kb on + strand, within CSW01_14565at 119.708 kb on - strand, within CSW01_14565at 119.710 kb on + strand, within CSW01_14565at 119.746 kb on - strand, within CSW01_14565at 119.797 kb on + strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.834 kb on + strand, within CSW01_14565at 119.834 kb on + strand, within CSW01_14565at 119.853 kb on + strand, within CSW01_14565at 119.966 kb on + strand, within CSW01_14565at 120.056 kb on - strand, within CSW01_14565at 120.074 kb on + strand, within CSW01_14565at 120.180 kb on - strand, within CSW01_14565

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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117,981 - CSW01_14555 0.40 -0.2
118,022 - CSW01_14555 0.43 +0.6
118,182 + CSW01_14555 0.53 -0.5
118,220 - CSW01_14555 0.56 +0.3
118,220 - CSW01_14555 0.56 +0.3
118,222 + CSW01_14555 0.56 -0.0
118,222 + CSW01_14555 0.56 -0.3
118,230 - CSW01_14555 0.57 -0.4
118,230 - CSW01_14555 0.57 +0.5
118,246 + CSW01_14555 0.58 -0.2
118,324 + CSW01_14555 0.63 +1.0
118,459 + CSW01_14555 0.72 +0.1
118,469 + CSW01_14555 0.73 -0.5
118,469 - CSW01_14555 0.73 -0.8
118,544 + CSW01_14555 0.78 +0.6
118,600 + CSW01_14555 0.82 +1.5
118,687 + CSW01_14555 0.88 +0.5
118,713 + CSW01_14555 0.89 +0.5
118,751 - -0.3
118,887 + +1.5
118,895 - -0.1
118,895 - -1.7
118,895 - +0.6
118,895 - +0.0
118,937 + CSW01_14560 0.15 -0.8
118,937 + CSW01_14560 0.15 -1.4
118,957 + CSW01_14560 0.19 -0.7
118,963 + CSW01_14560 0.21 +0.2
118,971 - CSW01_14560 0.23 -1.2
119,004 + CSW01_14560 0.30 +1.7
119,092 + CSW01_14560 0.50 +0.4
119,092 + CSW01_14560 0.50 -0.5
119,100 - CSW01_14560 0.52 -0.3
119,134 + CSW01_14560 0.60 -0.4
119,154 + CSW01_14560 0.64 +0.2
119,171 + CSW01_14560 0.68 +0.0
119,179 - CSW01_14560 0.70 -0.1
119,189 - CSW01_14560 0.72 -0.2
119,189 - CSW01_14560 0.72 +1.2
119,199 - CSW01_14560 0.75 -0.8
119,206 + CSW01_14560 0.76 +0.8
119,303 + +0.4
119,311 - +0.1
119,311 - +0.2
119,367 + -0.4
119,368 - -1.6
119,427 + +0.4
119,522 + CSW01_14565 0.12 +0.9
119,561 - CSW01_14565 0.14 -0.0
119,571 + CSW01_14565 0.14 +0.2
119,708 - CSW01_14565 0.22 +2.5
119,710 + CSW01_14565 0.22 -0.6
119,746 - CSW01_14565 0.24 +0.5
119,797 + CSW01_14565 0.27 +0.7
119,811 - CSW01_14565 0.28 +1.0
119,811 - CSW01_14565 0.28 -0.5
119,811 - CSW01_14565 0.28 +0.3
119,811 - CSW01_14565 0.28 +0.7
119,811 - CSW01_14565 0.28 +0.6
119,834 + CSW01_14565 0.29 -0.7
119,834 + CSW01_14565 0.29 +0.3
119,853 + CSW01_14565 0.30 -1.1
119,966 + CSW01_14565 0.37 +0.2
120,056 - CSW01_14565 0.42 -0.2
120,074 + CSW01_14565 0.43 +0.1
120,180 - CSW01_14565 0.49 -0.6

Or see this region's nucleotide sequence