Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12035

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
2,572,559	+		CSW01_12030	0.79	+0.1
2,572,559	+		CSW01_12030	0.79	+0.6
2,572,567	-		CSW01_12030	0.79	-0.0
2,572,574	+		CSW01_12030	0.79	-0.1
2,572,605	-		CSW01_12030	0.80	+0.3
2,572,616	+		CSW01_12030	0.80	+1.2
2,572,652	+		CSW01_12030	0.81	-2.2
2,572,652	+		CSW01_12030	0.81	+0.1
2,572,652	+		CSW01_12030	0.81	-1.2
2,572,652	+		CSW01_12030	0.81	-0.3
2,572,652	+		CSW01_12030	0.81	+0.1
2,572,652	+		CSW01_12030	0.81	+0.8
2,572,652	+		CSW01_12030	0.81	+0.3
2,572,652	+		CSW01_12030	0.81	+0.5
2,572,652	+		CSW01_12030	0.81	+1.5
2,572,652	+		CSW01_12030	0.81	+0.2
2,572,652	+		CSW01_12030	0.81	+0.8
2,572,652	+		CSW01_12030	0.81	-0.6
2,572,652	+		CSW01_12030	0.81	-0.0
2,572,660	-		CSW01_12030	0.81	-1.3
2,572,660	-		CSW01_12030	0.81	-0.3
2,572,660	-		CSW01_12030	0.81	-0.3
2,572,660	-		CSW01_12030	0.81	+0.6
2,572,660	-		CSW01_12030	0.81	+0.0
2,572,660	-		CSW01_12030	0.81	+0.8
2,572,660	-		CSW01_12030	0.81	+0.5
2,572,660	-		CSW01_12030	0.81	+0.3
2,572,684	-		CSW01_12030	0.81	+1.9
2,572,766	+		CSW01_12030	0.83	-0.4
2,572,817	+		CSW01_12030	0.84	-0.4
2,572,858	-		CSW01_12030	0.85	+0.0
2,572,895	+		CSW01_12030	0.86	+0.9
2,572,909	+		CSW01_12030	0.86	+0.0
2,572,909	+		CSW01_12030	0.86	+0.8
2,572,917	-		CSW01_12030	0.87	+0.3
2,572,917	-		CSW01_12030	0.87	+0.5
2,572,917	-		CSW01_12030	0.87	+0.5
2,572,917	-		CSW01_12030	0.87	+0.2
2,572,955	+		CSW01_12030	0.87	+1.4
2,572,963	-		CSW01_12030	0.88	+0.5
2,572,989	+		CSW01_12030	0.88	+0.6
2,572,997	-		CSW01_12030	0.88	+0.0
2,572,997	-		CSW01_12030	0.88	-0.5
2,573,067	-		CSW01_12030	0.90	+0.2
2,573,069	-		CSW01_12030	0.90	+0.0
2,573,078	+				+0.4
2,573,105	+				+0.6
2,573,105	+				-2.0
2,573,111	-				+1.0
2,573,113	-				+0.6
2,573,119	+				-0.2
2,573,137	-				+0.4
2,573,142	+				+0.7
2,573,199	+				+0.4
2,573,199	+				-0.3
2,573,225	-				+0.1
2,573,225	-				+0.1
2,573,225	-				+0.2
2,573,225	-				+1.1
2,573,287	+				+0.0
2,573,331	+				+0.3
2,573,453	+				+0.2
2,573,455	+				+0.0
2,573,472	+				-0.1
2,573,488	+				+0.2
2,573,490	+				+0.1
2,573,496	-				-0.0
2,573,498	-				-0.4
2,573,524	-				-0.0
2,573,528	-				-0.6
2,573,547	-				-0.3
2,573,547	-				+0.4
2,573,547	-				+0.9
2,573,572	+				+0.1
2,573,638	+				-0.6
2,573,654	-				+0.0
2,573,658	+				+0.2
2,573,666	-				-0.7
2,573,683	+		CSW01_12035	0.10	+0.8
2,573,690	+		CSW01_12035	0.11	+0.1
2,573,690	+		CSW01_12035	0.11	+1.0
2,573,690	+		CSW01_12035	0.11	-0.7
2,573,690	+		CSW01_12035	0.11	+0.1
2,573,690	+		CSW01_12035	0.11	+0.9
2,573,690	+		CSW01_12035	0.11	+2.5
2,573,690	+		CSW01_12035	0.11	+0.1
2,573,690	+		CSW01_12035	0.11	+0.0
2,573,690	+		CSW01_12035	0.11	+0.5
2,573,690	+		CSW01_12035	0.11	+0.9
2,573,690	+		CSW01_12035	0.11	-0.2
2,573,698	-		CSW01_12035	0.12	-1.0
2,573,698	-		CSW01_12035	0.12	+1.6
2,573,698	-		CSW01_12035	0.12	-0.1
2,573,698	-		CSW01_12035	0.12	-0.7
2,573,698	-		CSW01_12035	0.12	-0.5
2,573,698	-		CSW01_12035	0.12	+0.4
2,573,698	-		CSW01_12035	0.12	+0.2
2,573,708	-		CSW01_12035	0.12	-0.4
2,573,708	-		CSW01_12035	0.12	+0.1
2,573,708	-		CSW01_12035	0.12	-0.3
2,573,715	+		CSW01_12035	0.13	+0.0
2,573,737	+		CSW01_12035	0.14	-0.1
2,573,737	+		CSW01_12035	0.14	+1.5
2,573,737	+		CSW01_12035	0.14	-0.2
2,573,737	+		CSW01_12035	0.14	+0.3
2,573,737	+		CSW01_12035	0.14	+0.3
2,573,737	+		CSW01_12035	0.14	+0.5
2,573,737	+		CSW01_12035	0.14	-0.5
2,573,737	+		CSW01_12035	0.14	+0.3
2,573,745	-		CSW01_12035	0.15	-0.6
2,573,745	-		CSW01_12035	0.15	+0.4
2,573,745	-		CSW01_12035	0.15	+0.5
2,573,745	-		CSW01_12035	0.15	-0.5
2,573,745	-		CSW01_12035	0.15	+0.3
2,573,745	-		CSW01_12035	0.15	+0.3
2,573,745	-		CSW01_12035	0.15	-0.2
2,573,745	-		CSW01_12035	0.15	-0.5
2,573,745	-		CSW01_12035	0.15	-0.5
2,573,745	-		CSW01_12035	0.15	+0.6
2,573,745	-		CSW01_12035	0.15	-1.3
2,573,745	-		CSW01_12035	0.15	-0.2
2,573,795	-		CSW01_12035	0.18	+0.3
2,573,795	-		CSW01_12035	0.18	+0.4
2,573,803	+		CSW01_12035	0.19	-0.6
2,573,808	+		CSW01_12035	0.19	+0.2
2,573,811	-		CSW01_12035	0.20	-0.2
2,573,813	+		CSW01_12035	0.20	+0.3
2,573,821	-		CSW01_12035	0.20	-0.4
2,573,959	-		CSW01_12035	0.30	+0.4
2,573,960	+		CSW01_12035	0.30	+0.3
2,573,968	-		CSW01_12035	0.31	-0.6
2,573,968	-		CSW01_12035	0.31	-0.0
2,574,001	+		CSW01_12035	0.33	+0.0
2,574,014	-		CSW01_12035	0.34	-0.5
2,574,040	+		CSW01_12035	0.36	+0.6
2,574,040	+		CSW01_12035	0.36	+1.1
2,574,040	+		CSW01_12035	0.36	+0.0
2,574,040	+		CSW01_12035	0.36	-0.2
2,574,040	+		CSW01_12035	0.36	-0.3
2,574,040	+		CSW01_12035	0.36	-0.1
2,574,048	-		CSW01_12035	0.36	+0.8
2,574,048	-		CSW01_12035	0.36	+1.2
2,574,084	+		CSW01_12035	0.39	+0.1
2,574,345	-		CSW01_12035	0.57	+0.3
2,574,423	+		CSW01_12035	0.63	+1.3
2,574,423	+		CSW01_12035	0.63	-0.4
2,574,423	+		CSW01_12035	0.63	-0.1
2,574,599	-		CSW01_12035	0.75	+0.4
2,574,599	-		CSW01_12035	0.75	+0.5
2,574,618	-		CSW01_12035	0.77	+0.1
2,574,620	+		CSW01_12035	0.77	+1.4
2,574,666	+		CSW01_12035	0.80	+0.1
2,574,700	-		CSW01_12035	0.82	-0.9
2,574,700	-		CSW01_12035	0.82	+0.1
2,574,700	-		CSW01_12035	0.82	+0.8
2,574,754	-		CSW01_12035	0.86	-0.2
2,574,759	-		CSW01_12035	0.87	+0.8
2,574,759	-		CSW01_12035	0.87	+0.6
2,574,780	-		CSW01_12035	0.88	-0.2
2,574,821	+				+0.1
2,574,879	-				-0.1
2,574,905	+				+0.3
2,574,905	+				+0.6
2,574,912	+				-0.7
2,574,942	-				+0.4
2,574,954	+				-0.1
2,575,033	+				+0.1
2,575,052	+				+0.6
2,575,078	-				+0.7
2,575,108	+				+0.4
2,575,108	+				+0.0
2,575,117	+				+0.1
2,575,125	-				-0.3
2,575,125	-				-1.9
2,575,211	-		CSW01_12040	0.18	-0.5
2,575,279	+		CSW01_12040	0.33	+0.7
2,575,307	+		CSW01_12040	0.40	+1.4
2,575,320	-		CSW01_12040	0.43	+0.7
2,575,390	-		CSW01_12040	0.59	+0.1
2,575,399	+		CSW01_12040	0.61	+0.6
2,575,407	+		CSW01_12040	0.63	+0.5
2,575,407	-		CSW01_12040	0.63	+0.5
2,575,513	+		CSW01_12040	0.87	-0.5
2,575,516	+		CSW01_12040	0.88	-0.2
2,575,516	+		CSW01_12040	0.88	+0.4
2,575,516	+		CSW01_12040	0.88	+0.1
2,575,521	-		CSW01_12040	0.89	-0.0
2,575,524	-		CSW01_12040	0.90	-0.4
2,575,524	-		CSW01_12040	0.90	-0.6
2,575,524	-		CSW01_12040	0.90	+0.0
2,575,563	+				+0.1
2,575,563	+				+0.3
2,575,563	+				-0.4
2,575,571	-				+1.5
2,575,578	+				+0.7
2,575,586	-				-0.8
2,575,586	-				-0.3
2,575,607	+				-1.3
2,575,615	-				-1.3