Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11055

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
2,347,806	+		CSW01_11045	0.68	-0.2
2,347,917	+				-0.9
2,347,998	+				+0.7
2,348,116	-				-0.2
2,348,160	-		CSW01_11050	0.14	-0.8
2,348,166	+		CSW01_11050	0.15	-0.2
2,348,168	-		CSW01_11050	0.15	-0.2
2,348,175	-		CSW01_11050	0.16	-1.3
2,348,185	+		CSW01_11050	0.17	+0.2
2,348,229	-		CSW01_11050	0.23	+0.1
2,348,241	+		CSW01_11050	0.25	+0.0
2,348,262	-		CSW01_11050	0.28	+0.6
2,348,269	+		CSW01_11050	0.29	+0.0
2,348,277	-		CSW01_11050	0.30	-0.3
2,348,297	-		CSW01_11050	0.33	+0.5
2,348,346	+		CSW01_11050	0.40	-0.1
2,348,358	+		CSW01_11050	0.41	-0.1
2,348,406	+		CSW01_11050	0.48	-0.5
2,348,438	+		CSW01_11050	0.53	-0.8
2,348,438	+		CSW01_11050	0.53	+0.5
2,348,438	+		CSW01_11050	0.53	+0.3
2,348,438	+		CSW01_11050	0.53	-0.3
2,348,446	-		CSW01_11050	0.54	-0.5
2,348,446	-		CSW01_11050	0.54	-0.1
2,348,447	-		CSW01_11050	0.54	+0.0
2,348,452	+		CSW01_11050	0.55	-0.3
2,348,600	-		CSW01_11050	0.75	+0.1
2,348,634	+		CSW01_11050	0.80	+0.6
2,348,634	+		CSW01_11050	0.80	-0.5
2,348,642	-		CSW01_11050	0.81	+0.9
2,348,678	+		CSW01_11050	0.86	-0.0
2,348,705	-		CSW01_11050	0.90	+1.2
2,348,733	+				+0.3
2,348,741	-				-0.3
2,348,780	+				-0.3
2,348,785	+				-1.3
2,348,806	-				+0.8
2,348,848	+				-0.5
2,348,895	-		CSW01_11055	0.10	-0.9
2,348,916	-		CSW01_11055	0.12	-0.3
2,348,925	+		CSW01_11055	0.13	+0.5
2,348,925	+		CSW01_11055	0.13	+0.2
2,348,930	+		CSW01_11055	0.14	-1.1
2,348,938	-		CSW01_11055	0.14	-0.9
2,348,938	-		CSW01_11055	0.14	+0.2
2,348,938	-		CSW01_11055	0.14	+0.1
2,348,943	-		CSW01_11055	0.15	-0.4
2,348,947	+		CSW01_11055	0.15	+0.2
2,348,954	+		CSW01_11055	0.16	+0.1
2,348,955	-		CSW01_11055	0.16	-0.3
2,348,981	-		CSW01_11055	0.19	+1.0
2,348,982	-		CSW01_11055	0.19	+0.1
2,349,084	+		CSW01_11055	0.29	-0.4
2,349,109	-		CSW01_11055	0.31	-0.8
2,349,116	+		CSW01_11055	0.32	+0.0
2,349,116	+		CSW01_11055	0.32	-0.3
2,349,116	+		CSW01_11055	0.32	+0.5
2,349,116	+		CSW01_11055	0.32	+0.1
2,349,116	+		CSW01_11055	0.32	-0.7
2,349,116	+		CSW01_11055	0.32	-0.8
2,349,119	-		CSW01_11055	0.32	+1.0
2,349,124	-		CSW01_11055	0.33	-1.6
2,349,124	-		CSW01_11055	0.33	-0.5
2,349,124	-		CSW01_11055	0.33	+0.9
2,349,124	-		CSW01_11055	0.33	-0.9
2,349,124	-		CSW01_11055	0.33	+0.6
2,349,124	-		CSW01_11055	0.33	-0.5
2,349,124	-		CSW01_11055	0.33	-0.1
2,349,124	-		CSW01_11055	0.33	+0.4
2,349,135	+		CSW01_11055	0.34	-0.6
2,349,140	+		CSW01_11055	0.34	+0.1
2,349,144	-		CSW01_11055	0.35	+0.1
2,349,211	+		CSW01_11055	0.41	+0.0
2,349,300	+		CSW01_11055	0.50	-0.6
2,349,319	+		CSW01_11055	0.52	-0.5
2,349,325	+		CSW01_11055	0.53	+0.0
2,349,378	+		CSW01_11055	0.58	-2.3
2,349,441	+		CSW01_11055	0.64	+0.2
2,349,469	+		CSW01_11055	0.67	-0.4
2,349,477	-		CSW01_11055	0.68	-0.5
2,349,514	-		CSW01_11055	0.71	+0.2
2,349,584	+		CSW01_11055	0.78	+0.0
2,349,584	+		CSW01_11055	0.78	-0.4
2,349,584	+		CSW01_11055	0.78	-0.4
2,349,592	-		CSW01_11055	0.79	-0.1
2,349,592	-		CSW01_11055	0.79	+0.4
2,349,592	-		CSW01_11055	0.79	+1.3
2,349,592	-		CSW01_11055	0.79	-0.7
2,349,592	-		CSW01_11055	0.79	-0.2
2,349,592	-		CSW01_11055	0.79	-1.4
2,349,622	-		CSW01_11055	0.82	-0.6
2,349,700	+		CSW01_11055	0.90	+0.1
2,349,749	+				-0.2
2,349,845	-				-0.5
2,349,855	-				+0.1
2,349,855	-				+0.2
2,349,855	-				-0.3
2,349,857	-				+0.1
2,349,857	-				+0.5
2,349,857	-				+0.1
2,349,857	-				+0.9
2,349,967	+		CSW01_11060	0.14	-0.3
2,349,986	+		CSW01_11060	0.16	-0.1
2,349,986	+		CSW01_11060	0.16	+0.0
2,349,986	+		CSW01_11060	0.16	+0.7
2,349,986	+		CSW01_11060	0.16	+0.3
2,349,994	-		CSW01_11060	0.17	-0.3
2,349,994	-		CSW01_11060	0.17	+0.8
2,349,994	-		CSW01_11060	0.17	+0.2
2,349,994	-		CSW01_11060	0.17	-1.1
2,349,994	-		CSW01_11060	0.17	-0.2
2,350,009	+		CSW01_11060	0.19	-0.8
2,350,009	+		CSW01_11060	0.19	-0.8
2,350,017	-		CSW01_11060	0.20	+0.6
2,350,080	-		CSW01_11060	0.27	+0.2
2,350,121	-		CSW01_11060	0.31	+0.7
2,350,126	+		CSW01_11060	0.32	+0.0
2,350,145	+		CSW01_11060	0.34	+0.6
2,350,160	-		CSW01_11060	0.36	+2.8
2,350,160	-		CSW01_11060	0.36	-0.1
2,350,174	+		CSW01_11060	0.37	-1.7
2,350,219	+		CSW01_11060	0.42	+1.3
2,350,310	-		CSW01_11060	0.52	-0.3
2,350,369	-		CSW01_11060	0.59	-0.9
2,350,379	+		CSW01_11060	0.60	+0.1
2,350,379	+		CSW01_11060	0.60	+0.2
2,350,379	+		CSW01_11060	0.60	-1.6
2,350,379	+		CSW01_11060	0.60	-0.0
2,350,387	-		CSW01_11060	0.61	-0.2
2,350,387	-		CSW01_11060	0.61	-0.0
2,350,387	-		CSW01_11060	0.61	-0.4
2,350,432	-		CSW01_11060	0.66	-0.0
2,350,433	+		CSW01_11060	0.66	+0.0
2,350,534	+		CSW01_11060	0.77	-0.5
2,350,534	+		CSW01_11060	0.77	-0.3
2,350,608	+		CSW01_11060	0.85	-0.9
2,350,608	+		CSW01_11060	0.85	-0.1
2,350,611	-		CSW01_11060	0.86	-0.3
2,350,611	-		CSW01_11060	0.86	-0.5
2,350,615	+		CSW01_11060	0.86	+0.4
2,350,615	+		CSW01_11060	0.86	+0.7
2,350,615	+		CSW01_11060	0.86	+0.7
2,350,616	-		CSW01_11060	0.86	+0.2
2,350,616	-		CSW01_11060	0.86	+0.4
2,350,623	-		CSW01_11060	0.87	-0.3
2,350,625	+		CSW01_11060	0.87	+0.3
2,350,633	-		CSW01_11060	0.88	-0.1
2,350,633	-		CSW01_11060	0.88	-0.8
2,350,633	-		CSW01_11060	0.88	-0.5
2,350,633	-		CSW01_11060	0.88	-1.9
2,350,635	+		CSW01_11060	0.88	-0.2
2,350,648	-		CSW01_11060	0.90	+0.5
2,350,699	-				+0.2
2,350,742	+				+0.4
2,350,748	-				-0.1
2,350,750	+				-0.5
2,350,750	-				+0.1
2,350,758	-				+0.1
2,350,770	-				+0.4
2,350,770	-				+0.7
2,350,792	-				+0.1
2,350,794	-				+0.0