Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09200

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09195 and CSW01_09200 are separated by 14 nucleotidesCSW01_09200 and CSW01_09205 are separated by 17 nucleotidesCSW01_09205 and CSW01_09210 are separated by 2 nucleotides CSW01_09195: CSW01_09195 - protein TolB, at 1,975,882 to 1,977,234 _09195 CSW01_09200: CSW01_09200 - protein TolA, at 1,977,249 to 1,978,319 _09200 CSW01_09205: CSW01_09205 - protein TolR, at 1,978,337 to 1,978,777 _09205 CSW01_09210: CSW01_09210 - protein TolQ, at 1,978,780 to 1,979,463 _09210 Position (kb) 1977 1978 1979Strain fitness (log2 ratio) -1 0 1at 1979.309 kb on - strand, within CSW01_09210

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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1,979,309 - CSW01_09210 0.77 -0.8

Or see this region's nucleotide sequence