Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07610 and CSW01_07615 are separated by 198 nucleotides CSW01_07615 and CSW01_07620 overlap by 74 nucleotides CSW01_07620 and CSW01_07625 are separated by 224 nucleotides
CSW01_07610: CSW01_07610 - (Fe-S)-binding protein, at 1,627,549 to 1,629,210
_07610
CSW01_07615: CSW01_07615 - DUF3306 domain-containing protein, at 1,629,409 to 1,630,074
_07615
CSW01_07620: CSW01_07620 - DUF3305 domain-containing protein, at 1,630,001 to 1,630,477
_07620
CSW01_07625: CSW01_07625 - sulfurtransferase FdhD, at 1,630,702 to 1,631,535
_07625
Position (kb) 1630
1631 Strain fitness (log2 ratio) -1
0
1
2 at 1629.034 kb on - strand, within CSW01_07610 at 1629.052 kb on - strand at 1629.052 kb on - strand at 1629.083 kb on - strand at 1629.145 kb on - strand at 1629.433 kb on + strand at 1629.597 kb on - strand, within CSW01_07615 at 1629.599 kb on + strand, within CSW01_07615 at 1629.602 kb on - strand, within CSW01_07615 at 1629.607 kb on - strand, within CSW01_07615 at 1629.685 kb on - strand, within CSW01_07615 at 1629.710 kb on - strand, within CSW01_07615 at 1629.715 kb on - strand, within CSW01_07615 at 1629.829 kb on + strand, within CSW01_07615 at 1629.909 kb on - strand, within CSW01_07615 at 1630.193 kb on - strand, within CSW01_07620 at 1630.231 kb on + strand, within CSW01_07620 at 1630.240 kb on + strand, within CSW01_07620 at 1630.260 kb on - strand, within CSW01_07620 at 1630.284 kb on - strand, within CSW01_07620 at 1630.324 kb on + strand, within CSW01_07620 at 1630.473 kb on + strand at 1630.546 kb on + strand at 1630.693 kb on - strand at 1630.812 kb on + strand, within CSW01_07625 at 1630.822 kb on + strand, within CSW01_07625 at 1630.830 kb on - strand, within CSW01_07625 at 1630.885 kb on + strand, within CSW01_07625 at 1630.893 kb on - strand, within CSW01_07625 at 1631.087 kb on - strand, within CSW01_07625 at 1631.124 kb on + strand, within CSW01_07625 at 1631.124 kb on + strand, within CSW01_07625 at 1631.132 kb on - strand, within CSW01_07625 at 1631.132 kb on - strand, within CSW01_07625 at 1631.132 kb on - strand, within CSW01_07625 at 1631.132 kb on - strand, within CSW01_07625 at 1631.185 kb on + strand, within CSW01_07625 at 1631.185 kb on + strand, within CSW01_07625 at 1631.185 kb on + strand, within CSW01_07625 at 1631.193 kb on - strand, within CSW01_07625 at 1631.193 kb on - strand, within CSW01_07625 at 1631.193 kb on - strand, within CSW01_07625 at 1631.193 kb on - strand, within CSW01_07625 at 1631.247 kb on + strand, within CSW01_07625 at 1631.255 kb on - strand, within CSW01_07625 at 1631.273 kb on + strand, within CSW01_07625 at 1631.372 kb on + strand, within CSW01_07625 at 1631.411 kb on + strand, within CSW01_07625 at 1631.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 1,629,034 - CSW01_07610 0.89 -0.3 1,629,052 - -0.4 1,629,052 - -0.4 1,629,083 - -0.3 1,629,145 - -0.0 1,629,433 + +2.0 1,629,597 - CSW01_07615 0.28 -1.5 1,629,599 + CSW01_07615 0.29 -0.0 1,629,602 - CSW01_07615 0.29 -0.4 1,629,607 - CSW01_07615 0.30 -0.1 1,629,685 - CSW01_07615 0.41 +0.4 1,629,710 - CSW01_07615 0.45 -0.5 1,629,715 - CSW01_07615 0.46 -0.2 1,629,829 + CSW01_07615 0.63 +0.5 1,629,909 - CSW01_07615 0.75 +1.2 1,630,193 - CSW01_07620 0.40 -0.6 1,630,231 + CSW01_07620 0.48 -0.1 1,630,240 + CSW01_07620 0.50 -0.0 1,630,260 - CSW01_07620 0.54 -0.6 1,630,284 - CSW01_07620 0.59 +1.0 1,630,324 + CSW01_07620 0.68 -0.3 1,630,473 + +0.3 1,630,546 + +0.0 1,630,693 - +1.1 1,630,812 + CSW01_07625 0.13 +0.3 1,630,822 + CSW01_07625 0.14 -0.5 1,630,830 - CSW01_07625 0.15 +0.9 1,630,885 + CSW01_07625 0.22 +0.1 1,630,893 - CSW01_07625 0.23 -0.3 1,631,087 - CSW01_07625 0.46 -0.0 1,631,124 + CSW01_07625 0.51 -1.3 1,631,124 + CSW01_07625 0.51 +0.1 1,631,132 - CSW01_07625 0.52 +0.5 1,631,132 - CSW01_07625 0.52 +1.0 1,631,132 - CSW01_07625 0.52 +0.1 1,631,132 - CSW01_07625 0.52 +0.1 1,631,185 + CSW01_07625 0.58 -0.2 1,631,185 + CSW01_07625 0.58 -0.1 1,631,185 + CSW01_07625 0.58 +0.5 1,631,193 - CSW01_07625 0.59 -0.2 1,631,193 - CSW01_07625 0.59 -0.3 1,631,193 - CSW01_07625 0.59 -0.1 1,631,193 - CSW01_07625 0.59 -0.9 1,631,247 + CSW01_07625 0.65 +1.4 1,631,255 - CSW01_07625 0.66 +0.2 1,631,273 + CSW01_07625 0.68 +0.8 1,631,372 + CSW01_07625 0.80 -0.3 1,631,411 + CSW01_07625 0.85 +0.5 1,631,476 - +0.6
Or see this region's nucleotide sequence