Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06305

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06295 and CSW01_06300 are separated by 178 nucleotidesCSW01_06300 and CSW01_06305 are separated by 47 nucleotidesCSW01_06305 and CSW01_06310 are separated by 230 nucleotides CSW01_06295: CSW01_06295 - SAM-dependent methyltransferase, at 1,316,791 to 1,317,366 _06295 CSW01_06300: CSW01_06300 - DUF2750 domain-containing protein, at 1,317,545 to 1,317,940 _06300 CSW01_06305: CSW01_06305 - methyl-accepting chemotaxis protein, at 1,317,988 to 1,319,598 _06305 CSW01_06310: CSW01_06310 - transcriptional regulator, at 1,319,829 to 1,320,341 _06310 Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -1 0 1at 1317.438 kb on - strandat 1317.550 kb on + strandat 1317.704 kb on + strand, within CSW01_06300at 1317.781 kb on + strand, within CSW01_06300at 1317.781 kb on + strand, within CSW01_06300at 1317.856 kb on + strand, within CSW01_06300at 1318.121 kb on - strandat 1318.184 kb on - strand, within CSW01_06305at 1318.324 kb on - strand, within CSW01_06305at 1318.557 kb on - strand, within CSW01_06305at 1318.746 kb on - strand, within CSW01_06305at 1318.812 kb on + strand, within CSW01_06305at 1318.886 kb on + strand, within CSW01_06305at 1318.886 kb on + strand, within CSW01_06305at 1318.886 kb on + strand, within CSW01_06305at 1318.887 kb on - strand, within CSW01_06305at 1318.904 kb on - strand, within CSW01_06305at 1318.987 kb on - strand, within CSW01_06305at 1318.992 kb on - strand, within CSW01_06305at 1318.993 kb on + strand, within CSW01_06305at 1319.038 kb on - strand, within CSW01_06305at 1319.039 kb on + strand, within CSW01_06305at 1319.070 kb on + strand, within CSW01_06305at 1319.248 kb on - strand, within CSW01_06305at 1319.277 kb on + strand, within CSW01_06305at 1319.296 kb on + strand, within CSW01_06305at 1319.296 kb on + strand, within CSW01_06305at 1319.301 kb on + strand, within CSW01_06305at 1319.301 kb on + strand, within CSW01_06305at 1319.309 kb on - strand, within CSW01_06305at 1319.309 kb on - strand, within CSW01_06305at 1319.309 kb on - strand, within CSW01_06305at 1319.332 kb on + strand, within CSW01_06305at 1319.414 kb on - strand, within CSW01_06305at 1319.414 kb on - strand, within CSW01_06305at 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.643 kb on - strandat 1319.650 kb on + strandat 1319.793 kb on + strandat 1319.947 kb on - strand, within CSW01_06310at 1320.067 kb on + strand, within CSW01_06310at 1320.075 kb on - strand, within CSW01_06310at 1320.075 kb on - strand, within CSW01_06310at 1320.093 kb on - strand, within CSW01_06310at 1320.093 kb on - strand, within CSW01_06310at 1320.093 kb on - strand, within CSW01_06310at 1320.177 kb on + strand, within CSW01_06310at 1320.383 kb on + strandat 1320.393 kb on - strandat 1320.469 kb on + strandat 1320.583 kb on - strandat 1320.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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1,317,438 - -0.0
1,317,550 + +0.2
1,317,704 + CSW01_06300 0.40 -0.2
1,317,781 + CSW01_06300 0.60 -0.2
1,317,781 + CSW01_06300 0.60 +0.3
1,317,856 + CSW01_06300 0.79 -0.6
1,318,121 - -0.8
1,318,184 - CSW01_06305 0.12 -0.1
1,318,324 - CSW01_06305 0.21 +1.0
1,318,557 - CSW01_06305 0.35 -0.2
1,318,746 - CSW01_06305 0.47 -0.4
1,318,812 + CSW01_06305 0.51 -0.5
1,318,886 + CSW01_06305 0.56 -0.3
1,318,886 + CSW01_06305 0.56 -1.2
1,318,886 + CSW01_06305 0.56 -0.8
1,318,887 - CSW01_06305 0.56 -0.4
1,318,904 - CSW01_06305 0.57 +0.2
1,318,987 - CSW01_06305 0.62 -0.4
1,318,992 - CSW01_06305 0.62 -0.5
1,318,993 + CSW01_06305 0.62 -0.1
1,319,038 - CSW01_06305 0.65 +0.1
1,319,039 + CSW01_06305 0.65 -1.5
1,319,070 + CSW01_06305 0.67 +0.4
1,319,248 - CSW01_06305 0.78 +1.0
1,319,277 + CSW01_06305 0.80 +0.2
1,319,296 + CSW01_06305 0.81 -0.3
1,319,296 + CSW01_06305 0.81 -0.0
1,319,301 + CSW01_06305 0.82 +1.0
1,319,301 + CSW01_06305 0.82 -1.1
1,319,309 - CSW01_06305 0.82 +1.0
1,319,309 - CSW01_06305 0.82 +0.2
1,319,309 - CSW01_06305 0.82 +0.4
1,319,332 + CSW01_06305 0.83 -0.2
1,319,414 - CSW01_06305 0.89 -0.4
1,319,414 - CSW01_06305 0.89 -0.2
1,319,570 - +0.4
1,319,570 - -0.6
1,319,570 - +0.3
1,319,643 - +0.5
1,319,650 + -0.2
1,319,793 + +1.4
1,319,947 - CSW01_06310 0.23 -0.1
1,320,067 + CSW01_06310 0.46 +0.1
1,320,075 - CSW01_06310 0.48 +0.6
1,320,075 - CSW01_06310 0.48 +0.2
1,320,093 - CSW01_06310 0.51 -0.1
1,320,093 - CSW01_06310 0.51 +0.3
1,320,093 - CSW01_06310 0.51 +0.8
1,320,177 + CSW01_06310 0.68 -0.7
1,320,383 + -0.6
1,320,393 - +0.6
1,320,469 + -0.1
1,320,583 - -0.1
1,320,595 - +0.9

Or see this region's nucleotide sequence