Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06025 and CSW01_06030 are separated by 165 nucleotides CSW01_06030 and CSW01_06035 are separated by 291 nucleotides CSW01_06035 and CSW01_06040 are separated by 135 nucleotides
CSW01_06025: CSW01_06025 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 1,263,178 to 1,264,284
_06025
CSW01_06030: CSW01_06030 - helicase, at 1,264,450 to 1,264,848
_06030
CSW01_06035: CSW01_06035 - hypothetical protein, at 1,265,140 to 1,265,337
_06035
CSW01_06040: CSW01_06040 - molecular chaperone DnaJ, at 1,265,473 to 1,266,525
_06040
Position (kb) 1264
1265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1263.470 kb on + strand, within CSW01_06025 at 1263.486 kb on + strand, within CSW01_06025 at 1263.486 kb on + strand, within CSW01_06025 at 1263.494 kb on - strand, within CSW01_06025 at 1263.494 kb on - strand, within CSW01_06025 at 1263.590 kb on - strand, within CSW01_06025 at 1263.623 kb on + strand, within CSW01_06025 at 1263.645 kb on + strand, within CSW01_06025 at 1263.653 kb on - strand, within CSW01_06025 at 1263.653 kb on - strand, within CSW01_06025 at 1263.653 kb on - strand, within CSW01_06025 at 1263.670 kb on + strand, within CSW01_06025 at 1263.678 kb on - strand, within CSW01_06025 at 1263.781 kb on - strand, within CSW01_06025 at 1263.804 kb on + strand, within CSW01_06025 at 1263.812 kb on - strand, within CSW01_06025 at 1263.812 kb on - strand, within CSW01_06025 at 1263.822 kb on + strand, within CSW01_06025 at 1263.848 kb on + strand, within CSW01_06025 at 1263.849 kb on - strand, within CSW01_06025 at 1264.004 kb on - strand, within CSW01_06025 at 1264.019 kb on + strand, within CSW01_06025 at 1264.034 kb on + strand, within CSW01_06025 at 1264.034 kb on + strand, within CSW01_06025 at 1264.174 kb on + strand at 1264.182 kb on - strand at 1264.221 kb on - strand at 1264.363 kb on - strand at 1264.458 kb on + strand at 1264.488 kb on + strand at 1264.511 kb on - strand, within CSW01_06030 at 1264.524 kb on + strand, within CSW01_06030 at 1264.524 kb on + strand, within CSW01_06030 at 1264.714 kb on - strand, within CSW01_06030 at 1264.845 kb on + strand at 1265.084 kb on - strand at 1265.233 kb on + strand, within CSW01_06035 at 1265.267 kb on - strand, within CSW01_06035 at 1265.320 kb on - strand at 1265.530 kb on + strand at 1265.547 kb on - strand at 1265.565 kb on + strand at 1265.573 kb on - strand at 1265.573 kb on - strand at 1265.653 kb on + strand, within CSW01_06040 at 1265.706 kb on - strand, within CSW01_06040
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 1,263,470 + CSW01_06025 0.26 +0.6 1,263,486 + CSW01_06025 0.28 -1.8 1,263,486 + CSW01_06025 0.28 -0.3 1,263,494 - CSW01_06025 0.29 +2.7 1,263,494 - CSW01_06025 0.29 +2.2 1,263,590 - CSW01_06025 0.37 +0.5 1,263,623 + CSW01_06025 0.40 -0.8 1,263,645 + CSW01_06025 0.42 +0.3 1,263,653 - CSW01_06025 0.43 -1.1 1,263,653 - CSW01_06025 0.43 -0.1 1,263,653 - CSW01_06025 0.43 +0.3 1,263,670 + CSW01_06025 0.44 -0.1 1,263,678 - CSW01_06025 0.45 +0.4 1,263,781 - CSW01_06025 0.54 +0.6 1,263,804 + CSW01_06025 0.57 -0.3 1,263,812 - CSW01_06025 0.57 +0.5 1,263,812 - CSW01_06025 0.57 -0.8 1,263,822 + CSW01_06025 0.58 -3.0 1,263,848 + CSW01_06025 0.61 +0.7 1,263,849 - CSW01_06025 0.61 +0.3 1,264,004 - CSW01_06025 0.75 -0.5 1,264,019 + CSW01_06025 0.76 -1.1 1,264,034 + CSW01_06025 0.77 +0.7 1,264,034 + CSW01_06025 0.77 -0.3 1,264,174 + +0.6 1,264,182 - -0.1 1,264,221 - -1.0 1,264,363 - -0.1 1,264,458 + +0.5 1,264,488 + +0.0 1,264,511 - CSW01_06030 0.15 -0.3 1,264,524 + CSW01_06030 0.19 -1.1 1,264,524 + CSW01_06030 0.19 -0.4 1,264,714 - CSW01_06030 0.66 -0.0 1,264,845 + +1.6 1,265,084 - +0.1 1,265,233 + CSW01_06035 0.47 +0.3 1,265,267 - CSW01_06035 0.64 +1.6 1,265,320 - -0.0 1,265,530 + +0.7 1,265,547 - -0.6 1,265,565 + +0.3 1,265,573 - +1.6 1,265,573 - -0.3 1,265,653 + CSW01_06040 0.17 +0.3 1,265,706 - CSW01_06040 0.22 -1.4
Or see this region's nucleotide sequence