Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04550 and CSW01_04555 are separated by 0 nucleotides CSW01_04555 and CSW01_04560 are separated by 97 nucleotides CSW01_04560 and CSW01_04565 are separated by 19 nucleotides CSW01_04565 and CSW01_04570 are separated by 41 nucleotides
CSW01_04550: CSW01_04550 - pseudouridine synthase, at 945,118 to 945,429
_04550
CSW01_04555: CSW01_04555 - tRNA pseudouridine(65) synthase TruC, at 945,430 to 946,164
_04555
CSW01_04560: CSW01_04560 - 1-deoxy-D-xylulose-5-phosphate synthase, at 946,262 to 948,142
_04560
CSW01_04565: CSW01_04565 - (2E,6E)-farnesyl diphosphate synthase, at 948,162 to 949,046
_04565
CSW01_04570: CSW01_04570 - exodeoxyribonuclease 7 small subunit, at 949,088 to 949,330
_04570
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -1
0
1
2 at 945.367 kb on + strand, within CSW01_04550 at 945.416 kb on + strand at 945.516 kb on + strand, within CSW01_04555 at 945.524 kb on - strand, within CSW01_04555 at 945.615 kb on - strand, within CSW01_04555 at 945.615 kb on - strand, within CSW01_04555 at 945.615 kb on - strand, within CSW01_04555 at 945.638 kb on + strand, within CSW01_04555 at 945.724 kb on + strand, within CSW01_04555 at 945.840 kb on + strand, within CSW01_04555 at 945.894 kb on + strand, within CSW01_04555 at 945.919 kb on - strand, within CSW01_04555 at 945.921 kb on - strand, within CSW01_04555 at 945.970 kb on - strand, within CSW01_04555 at 945.970 kb on - strand, within CSW01_04555 at 946.061 kb on + strand, within CSW01_04555 at 946.061 kb on + strand, within CSW01_04555 at 946.067 kb on - strand, within CSW01_04555 at 946.069 kb on - strand, within CSW01_04555 at 946.069 kb on - strand, within CSW01_04555 at 946.083 kb on + strand, within CSW01_04555 at 946.093 kb on + strand at 946.101 kb on - strand at 946.101 kb on - strand at 946.101 kb on - strand at 946.101 kb on - strand at 946.208 kb on + strand at 949.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 945,367 + CSW01_04550 0.80 +0.3 945,416 + -0.7 945,516 + CSW01_04555 0.12 +0.0 945,524 - CSW01_04555 0.13 -0.2 945,615 - CSW01_04555 0.25 +0.6 945,615 - CSW01_04555 0.25 -0.3 945,615 - CSW01_04555 0.25 +0.9 945,638 + CSW01_04555 0.28 +0.6 945,724 + CSW01_04555 0.40 -0.3 945,840 + CSW01_04555 0.56 +0.5 945,894 + CSW01_04555 0.63 +0.5 945,919 - CSW01_04555 0.67 +0.7 945,921 - CSW01_04555 0.67 -0.1 945,970 - CSW01_04555 0.73 +0.7 945,970 - CSW01_04555 0.73 -0.1 946,061 + CSW01_04555 0.86 +0.3 946,061 + CSW01_04555 0.86 +2.5 946,067 - CSW01_04555 0.87 -1.6 946,069 - CSW01_04555 0.87 -0.9 946,069 - CSW01_04555 0.87 +0.5 946,083 + CSW01_04555 0.89 +0.6 946,093 + +0.3 946,101 - -0.6 946,101 - -0.7 946,101 - +0.1 946,101 - -0.4 946,208 + -0.6 949,101 - -0.1
Or see this region's nucleotide sequence