Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04345

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04335 and CSW01_04340 are separated by 8 nucleotidesCSW01_04340 and CSW01_04345 are separated by 2 nucleotidesCSW01_04345 and CSW01_04350 are separated by 172 nucleotides CSW01_04335: CSW01_04335 - RDD family protein, at 902,905 to 903,378 _04335 CSW01_04340: CSW01_04340 - M23 family peptidase, at 903,387 to 904,295 _04340 CSW01_04345: CSW01_04345 - accessory colonization factor AcfA, at 904,298 to 904,945 _04345 CSW01_04350: CSW01_04350 - accessory colonization factor AcfD, at 905,118 to 909,680 _04350 Position (kb) 904 905Strain fitness (log2 ratio) -2 -1 0 1 2at 903.342 kb on + strandat 903.563 kb on - strand, within CSW01_04340at 903.563 kb on - strand, within CSW01_04340at 903.563 kb on - strand, within CSW01_04340at 903.658 kb on + strand, within CSW01_04340at 903.706 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.718 kb on + strand, within CSW01_04340at 903.723 kb on + strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.726 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.750 kb on - strand, within CSW01_04340at 903.753 kb on - strand, within CSW01_04340at 903.763 kb on - strand, within CSW01_04340at 903.780 kb on + strand, within CSW01_04340at 903.894 kb on - strand, within CSW01_04340at 903.903 kb on + strand, within CSW01_04340at 903.974 kb on + strand, within CSW01_04340at 903.976 kb on - strand, within CSW01_04340at 904.000 kb on + strand, within CSW01_04340at 904.008 kb on - strand, within CSW01_04340at 904.029 kb on - strand, within CSW01_04340at 904.031 kb on + strand, within CSW01_04340at 904.042 kb on + strand, within CSW01_04340at 904.042 kb on + strand, within CSW01_04340at 904.052 kb on - strand, within CSW01_04340at 904.101 kb on + strand, within CSW01_04340at 904.103 kb on + strand, within CSW01_04340at 904.103 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.108 kb on + strand, within CSW01_04340at 904.109 kb on - strand, within CSW01_04340at 904.111 kb on - strand, within CSW01_04340at 904.111 kb on - strand, within CSW01_04340at 904.114 kb on + strand, within CSW01_04340at 904.114 kb on + strand, within CSW01_04340at 904.114 kb on - strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.119 kb on + strand, within CSW01_04340at 904.122 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.127 kb on - strand, within CSW01_04340at 904.152 kb on + strand, within CSW01_04340at 904.153 kb on + strand, within CSW01_04340at 904.160 kb on - strand, within CSW01_04340at 904.161 kb on - strand, within CSW01_04340at 904.168 kb on - strand, within CSW01_04340at 904.304 kb on - strandat 904.310 kb on - strandat 904.310 kb on - strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.338 kb on + strandat 904.346 kb on - strandat 904.346 kb on - strandat 904.361 kb on + strandat 904.369 kb on - strand, within CSW01_04345at 904.369 kb on - strand, within CSW01_04345at 904.369 kb on - strand, within CSW01_04345at 904.392 kb on - strand, within CSW01_04345at 904.421 kb on - strand, within CSW01_04345at 904.467 kb on + strand, within CSW01_04345at 904.537 kb on + strand, within CSW01_04345at 904.545 kb on - strand, within CSW01_04345at 904.563 kb on - strand, within CSW01_04345at 904.587 kb on + strand, within CSW01_04345at 904.587 kb on + strand, within CSW01_04345at 904.587 kb on + strand, within CSW01_04345at 904.587 kb on + strand, within CSW01_04345at 904.589 kb on - strand, within CSW01_04345at 904.595 kb on - strand, within CSW01_04345at 904.595 kb on - strand, within CSW01_04345at 904.596 kb on - strand, within CSW01_04345at 904.621 kb on - strand, within CSW01_04345at 904.623 kb on + strand, within CSW01_04345at 904.623 kb on + strand, within CSW01_04345at 904.659 kb on - strand, within CSW01_04345at 904.661 kb on - strand, within CSW01_04345at 904.779 kb on + strand, within CSW01_04345at 904.779 kb on + strand, within CSW01_04345at 904.810 kb on + strand, within CSW01_04345at 904.824 kb on + strand, within CSW01_04345at 904.824 kb on + strand, within CSW01_04345at 904.832 kb on + strand, within CSW01_04345at 904.832 kb on + strand, within CSW01_04345at 904.832 kb on - strand, within CSW01_04345at 904.836 kb on + strand, within CSW01_04345at 904.844 kb on + strand, within CSW01_04345at 904.844 kb on + strand, within CSW01_04345at 904.852 kb on - strand, within CSW01_04345at 904.878 kb on + strand, within CSW01_04345at 904.880 kb on + strand, within CSW01_04345at 904.881 kb on + strandat 904.886 kb on - strandat 904.888 kb on + strandat 904.888 kb on - strandat 904.888 kb on - strandat 904.896 kb on - strandat 905.118 kb on - strandat 905.145 kb on - strandat 905.188 kb on + strandat 905.196 kb on - strandat 905.196 kb on - strandat 905.196 kb on - strandat 905.222 kb on - strandat 905.230 kb on + strandat 905.282 kb on - strandat 905.298 kb on + strandat 905.299 kb on - strandat 905.299 kb on - strandat 905.334 kb on - strandat 905.344 kb on - strandat 905.349 kb on - strandat 905.353 kb on + strandat 905.405 kb on - strandat 905.440 kb on - strandat 905.493 kb on + strandat 905.498 kb on + strandat 905.498 kb on + strandat 905.498 kb on + strandat 905.506 kb on - strandat 905.507 kb on - strandat 905.507 kb on - strandat 905.598 kb on + strand, within CSW01_04350at 905.604 kb on - strand, within CSW01_04350at 905.606 kb on - strand, within CSW01_04350at 905.635 kb on + strand, within CSW01_04350at 905.635 kb on + strand, within CSW01_04350at 905.643 kb on - strand, within CSW01_04350at 905.643 kb on - strand, within CSW01_04350at 905.697 kb on - strand, within CSW01_04350at 905.712 kb on + strand, within CSW01_04350at 905.713 kb on + strand, within CSW01_04350at 905.720 kb on - strand, within CSW01_04350at 905.720 kb on - strand, within CSW01_04350at 905.720 kb on - strand, within CSW01_04350at 905.721 kb on - strand, within CSW01_04350at 905.721 kb on - strand, within CSW01_04350at 905.734 kb on - strand, within CSW01_04350at 905.734 kb on - strand, within CSW01_04350at 905.744 kb on + strand, within CSW01_04350at 905.751 kb on + strand, within CSW01_04350at 905.751 kb on + strand, within CSW01_04350at 905.784 kb on - strand, within CSW01_04350at 905.790 kb on + strand, within CSW01_04350at 905.802 kb on - strand, within CSW01_04350at 905.804 kb on + strand, within CSW01_04350at 905.804 kb on - strand, within CSW01_04350at 905.812 kb on + strand, within CSW01_04350at 905.812 kb on + strand, within CSW01_04350at 905.813 kb on - strand, within CSW01_04350at 905.813 kb on - strand, within CSW01_04350at 905.820 kb on - strand, within CSW01_04350at 905.820 kb on - strand, within CSW01_04350at 905.820 kb on - strand, within CSW01_04350at 905.820 kb on - strand, within CSW01_04350at 905.828 kb on + strand, within CSW01_04350at 905.835 kb on - strand, within CSW01_04350at 905.836 kb on - strand, within CSW01_04350at 905.836 kb on - strand, within CSW01_04350at 905.867 kb on - strand, within CSW01_04350at 905.889 kb on - strand, within CSW01_04350at 905.917 kb on - strand, within CSW01_04350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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903,342 + +0.2
903,563 - CSW01_04340 0.19 +0.4
903,563 - CSW01_04340 0.19 +0.1
903,563 - CSW01_04340 0.19 +0.5
903,658 + CSW01_04340 0.30 -0.3
903,706 + CSW01_04340 0.35 -0.3
903,718 + CSW01_04340 0.36 +0.3
903,718 + CSW01_04340 0.36 +0.9
903,718 + CSW01_04340 0.36 -1.0
903,723 + CSW01_04340 0.37 -0.8
903,726 - CSW01_04340 0.37 +1.3
903,726 - CSW01_04340 0.37 -0.6
903,726 - CSW01_04340 0.37 -0.8
903,726 - CSW01_04340 0.37 +0.1
903,750 - CSW01_04340 0.40 -1.3
903,750 - CSW01_04340 0.40 +0.2
903,750 - CSW01_04340 0.40 -0.2
903,750 - CSW01_04340 0.40 -1.7
903,750 - CSW01_04340 0.40 +0.9
903,750 - CSW01_04340 0.40 -0.5
903,753 - CSW01_04340 0.40 +0.1
903,763 - CSW01_04340 0.41 -0.5
903,780 + CSW01_04340 0.43 -0.3
903,894 - CSW01_04340 0.56 +0.5
903,903 + CSW01_04340 0.57 +0.2
903,974 + CSW01_04340 0.65 -0.0
903,976 - CSW01_04340 0.65 -0.7
904,000 + CSW01_04340 0.67 -0.3
904,008 - CSW01_04340 0.68 +0.3
904,029 - CSW01_04340 0.71 +0.0
904,031 + CSW01_04340 0.71 +0.5
904,042 + CSW01_04340 0.72 +0.3
904,042 + CSW01_04340 0.72 +0.4
904,052 - CSW01_04340 0.73 -0.5
904,101 + CSW01_04340 0.79 -0.7
904,103 + CSW01_04340 0.79 +0.1
904,103 + CSW01_04340 0.79 +0.4
904,108 + CSW01_04340 0.79 -0.8
904,108 + CSW01_04340 0.79 -0.4
904,108 + CSW01_04340 0.79 +0.8
904,108 + CSW01_04340 0.79 +0.3
904,108 + CSW01_04340 0.79 -0.9
904,108 + CSW01_04340 0.79 -0.3
904,108 + CSW01_04340 0.79 -0.1
904,108 + CSW01_04340 0.79 -0.2
904,108 + CSW01_04340 0.79 +0.2
904,109 - CSW01_04340 0.79 +0.1
904,111 - CSW01_04340 0.80 -0.4
904,111 - CSW01_04340 0.80 +0.1
904,114 + CSW01_04340 0.80 -0.6
904,114 + CSW01_04340 0.80 -0.2
904,114 - CSW01_04340 0.80 -1.1
904,119 + CSW01_04340 0.81 -0.8
904,119 + CSW01_04340 0.81 +0.2
904,119 + CSW01_04340 0.81 +0.2
904,119 + CSW01_04340 0.81 -0.1
904,119 + CSW01_04340 0.81 +2.6
904,119 + CSW01_04340 0.81 +0.7
904,119 + CSW01_04340 0.81 +2.2
904,119 + CSW01_04340 0.81 +1.6
904,119 + CSW01_04340 0.81 -0.4
904,119 + CSW01_04340 0.81 -0.8
904,119 + CSW01_04340 0.81 +0.0
904,119 + CSW01_04340 0.81 -0.9
904,119 + CSW01_04340 0.81 +0.8
904,119 + CSW01_04340 0.81 +0.0
904,119 + CSW01_04340 0.81 +0.0
904,119 + CSW01_04340 0.81 +1.7
904,119 + CSW01_04340 0.81 +0.7
904,122 - CSW01_04340 0.81 -1.7
904,127 - CSW01_04340 0.81 -0.2
904,127 - CSW01_04340 0.81 +0.2
904,127 - CSW01_04340 0.81 +0.3
904,127 - CSW01_04340 0.81 -0.3
904,127 - CSW01_04340 0.81 -0.6
904,127 - CSW01_04340 0.81 +0.0
904,127 - CSW01_04340 0.81 +0.8
904,127 - CSW01_04340 0.81 -0.1
904,127 - CSW01_04340 0.81 -0.4
904,127 - CSW01_04340 0.81 +0.1
904,127 - CSW01_04340 0.81 +0.1
904,127 - CSW01_04340 0.81 +0.4
904,127 - CSW01_04340 0.81 +0.8
904,127 - CSW01_04340 0.81 -0.4
904,127 - CSW01_04340 0.81 +0.3
904,127 - CSW01_04340 0.81 -1.3
904,152 + CSW01_04340 0.84 -0.4
904,153 + CSW01_04340 0.84 -1.0
904,160 - CSW01_04340 0.85 -1.5
904,161 - CSW01_04340 0.85 -0.3
904,168 - CSW01_04340 0.86 +1.1
904,304 - +0.0
904,310 - -0.7
904,310 - -2.2
904,338 + -0.2
904,338 + -0.0
904,338 + +0.6
904,338 + -0.5
904,338 + -0.2
904,346 - +0.3
904,346 - +1.1
904,361 + +0.1
904,369 - CSW01_04345 0.11 +0.2
904,369 - CSW01_04345 0.11 -0.0
904,369 - CSW01_04345 0.11 -0.0
904,392 - CSW01_04345 0.15 -0.4
904,421 - CSW01_04345 0.19 -0.5
904,467 + CSW01_04345 0.26 -0.7
904,537 + CSW01_04345 0.37 -1.2
904,545 - CSW01_04345 0.38 +0.3
904,563 - CSW01_04345 0.41 +0.8
904,587 + CSW01_04345 0.45 +0.2
904,587 + CSW01_04345 0.45 -0.3
904,587 + CSW01_04345 0.45 +0.2
904,587 + CSW01_04345 0.45 -0.0
904,589 - CSW01_04345 0.45 -0.9
904,595 - CSW01_04345 0.46 +0.2
904,595 - CSW01_04345 0.46 -0.3
904,596 - CSW01_04345 0.46 +0.2
904,621 - CSW01_04345 0.50 +0.2
904,623 + CSW01_04345 0.50 -0.5
904,623 + CSW01_04345 0.50 -1.0
904,659 - CSW01_04345 0.56 +0.1
904,661 - CSW01_04345 0.56 +0.1
904,779 + CSW01_04345 0.74 +0.2
904,779 + CSW01_04345 0.74 +0.9
904,810 + CSW01_04345 0.79 +0.1
904,824 + CSW01_04345 0.81 +0.6
904,824 + CSW01_04345 0.81 -1.0
904,832 + CSW01_04345 0.82 -0.4
904,832 + CSW01_04345 0.82 -0.9
904,832 - CSW01_04345 0.82 -0.2
904,836 + CSW01_04345 0.83 -0.2
904,844 + CSW01_04345 0.84 +0.3
904,844 + CSW01_04345 0.84 -0.1
904,852 - CSW01_04345 0.85 -0.1
904,878 + CSW01_04345 0.90 -0.8
904,880 + CSW01_04345 0.90 -0.1
904,881 + +0.9
904,886 - -1.1
904,888 + -0.1
904,888 - +1.5
904,888 - -1.7
904,896 - -0.4
905,118 - +0.4
905,145 - +0.4
905,188 + -0.0
905,196 - +0.3
905,196 - +0.1
905,196 - -0.8
905,222 - -0.9
905,230 + +0.0
905,282 - +0.2
905,298 + +0.4
905,299 - +0.1
905,299 - +0.1
905,334 - +0.6
905,344 - -0.5
905,349 - -0.3
905,353 + +1.3
905,405 - +1.4
905,440 - +0.8
905,493 + +0.4
905,498 + +0.6
905,498 + +1.0
905,498 + +0.8
905,506 - -1.2
905,507 - -0.3
905,507 - -0.0
905,598 + CSW01_04350 0.11 -0.7
905,604 - CSW01_04350 0.11 +0.7
905,606 - CSW01_04350 0.11 +1.0
905,635 + CSW01_04350 0.11 +1.0
905,635 + CSW01_04350 0.11 +0.5
905,643 - CSW01_04350 0.12 -0.4
905,643 - CSW01_04350 0.12 -0.0
905,697 - CSW01_04350 0.13 -0.4
905,712 + CSW01_04350 0.13 +0.6
905,713 + CSW01_04350 0.13 +0.4
905,720 - CSW01_04350 0.13 +0.3
905,720 - CSW01_04350 0.13 -0.5
905,720 - CSW01_04350 0.13 +0.4
905,721 - CSW01_04350 0.13 -0.9
905,721 - CSW01_04350 0.13 -0.8
905,734 - CSW01_04350 0.13 -0.3
905,734 - CSW01_04350 0.13 -0.7
905,744 + CSW01_04350 0.14 +0.3
905,751 + CSW01_04350 0.14 +0.4
905,751 + CSW01_04350 0.14 -0.4
905,784 - CSW01_04350 0.15 +0.6
905,790 + CSW01_04350 0.15 +0.5
905,802 - CSW01_04350 0.15 -0.1
905,804 + CSW01_04350 0.15 +0.2
905,804 - CSW01_04350 0.15 -0.1
905,812 + CSW01_04350 0.15 -1.7
905,812 + CSW01_04350 0.15 +0.9
905,813 - CSW01_04350 0.15 +0.6
905,813 - CSW01_04350 0.15 +0.2
905,820 - CSW01_04350 0.15 +0.1
905,820 - CSW01_04350 0.15 +0.0
905,820 - CSW01_04350 0.15 +1.1
905,820 - CSW01_04350 0.15 +0.5
905,828 + CSW01_04350 0.16 -0.1
905,835 - CSW01_04350 0.16 +0.4
905,836 - CSW01_04350 0.16 +0.6
905,836 - CSW01_04350 0.16 -0.3
905,867 - CSW01_04350 0.16 +0.1
905,889 - CSW01_04350 0.17 -0.9
905,917 - CSW01_04350 0.18 -0.2

Or see this region's nucleotide sequence