Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03160

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03150 and CSW01_03155 are separated by 73 nucleotidesCSW01_03155 and CSW01_03160 are separated by 124 nucleotidesCSW01_03160 and CSW01_03165 are separated by 210 nucleotides CSW01_03150: CSW01_03150 - tRNA glutamyl-Q(34) synthetase GluQRS, at 621,078 to 621,968 _03150 CSW01_03155: CSW01_03155 - RNA polymerase-binding transcription factor DksA, at 622,042 to 622,488 _03155 CSW01_03160: CSW01_03160 - DNA/RNA nuclease SfsA, at 622,613 to 623,383 _03160 CSW01_03165: CSW01_03165 - hydrolase, at 623,594 to 624,946 _03165 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.685 kb on + strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.765 kb on - strand, within CSW01_03150at 621.790 kb on - strand, within CSW01_03150at 621.801 kb on + strand, within CSW01_03150at 621.819 kb on - strand, within CSW01_03150at 621.842 kb on + strand, within CSW01_03150at 621.953 kb on + strandat 622.028 kb on - strandat 622.096 kb on + strand, within CSW01_03155at 622.106 kb on - strand, within CSW01_03155at 622.175 kb on + strand, within CSW01_03155at 622.240 kb on - strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.309 kb on - strand, within CSW01_03155at 622.364 kb on + strand, within CSW01_03155at 622.400 kb on + strand, within CSW01_03155at 622.402 kb on + strand, within CSW01_03155at 622.410 kb on - strand, within CSW01_03155at 622.435 kb on + strand, within CSW01_03155at 622.646 kb on - strandat 622.686 kb on + strandat 622.686 kb on + strandat 622.694 kb on - strand, within CSW01_03160at 622.737 kb on + strand, within CSW01_03160at 622.749 kb on + strand, within CSW01_03160at 622.803 kb on - strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.848 kb on + strand, within CSW01_03160at 622.856 kb on + strand, within CSW01_03160at 622.864 kb on - strand, within CSW01_03160at 622.891 kb on + strand, within CSW01_03160at 622.908 kb on + strand, within CSW01_03160at 622.945 kb on + strand, within CSW01_03160at 622.953 kb on - strand, within CSW01_03160at 623.010 kb on + strand, within CSW01_03160at 623.017 kb on + strand, within CSW01_03160at 623.018 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.047 kb on + strand, within CSW01_03160at 623.088 kb on + strand, within CSW01_03160at 623.096 kb on - strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.135 kb on - strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.194 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.207 kb on - strand, within CSW01_03160at 623.231 kb on - strand, within CSW01_03160at 623.232 kb on + strand, within CSW01_03160at 623.241 kb on + strand, within CSW01_03160at 623.324 kb on + strandat 623.362 kb on - strandat 623.381 kb on + strandat 623.451 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.484 kb on + strandat 623.520 kb on + strandat 623.664 kb on + strandat 623.706 kb on - strandat 623.716 kb on - strandat 623.716 kb on - strandat 623.716 kb on - strandat 623.726 kb on - strandat 623.732 kb on - strand, within CSW01_03165at 623.766 kb on + strand, within CSW01_03165at 623.766 kb on + strand, within CSW01_03165at 623.774 kb on - strand, within CSW01_03165at 623.791 kb on + strand, within CSW01_03165at 623.814 kb on + strand, within CSW01_03165at 623.814 kb on + strand, within CSW01_03165at 623.822 kb on - strand, within CSW01_03165at 623.822 kb on - strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.922 kb on - strand, within CSW01_03165at 623.922 kb on - strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.970 kb on - strand, within CSW01_03165at 623.977 kb on - strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 624.032 kb on + strand, within CSW01_03165at 624.045 kb on + strand, within CSW01_03165at 624.112 kb on - strand, within CSW01_03165at 624.123 kb on + strand, within CSW01_03165at 624.154 kb on - strand, within CSW01_03165at 624.180 kb on + strand, within CSW01_03165at 624.202 kb on - strand, within CSW01_03165at 624.297 kb on + strand, within CSW01_03165at 624.305 kb on - strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.314 kb on - strand, within CSW01_03165at 624.362 kb on + strand, within CSW01_03165at 624.370 kb on - strand, within CSW01_03165at 624.370 kb on - strand, within CSW01_03165at 624.380 kb on - strand, within CSW01_03165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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621,684 + CSW01_03150 0.68 +0.5
621,684 + CSW01_03150 0.68 +1.1
621,684 + CSW01_03150 0.68 +0.0
621,684 + CSW01_03150 0.68 +0.7
621,684 + CSW01_03150 0.68 +0.6
621,684 + CSW01_03150 0.68 -1.0
621,685 + CSW01_03150 0.68 +0.6
621,692 - CSW01_03150 0.69 +1.0
621,692 - CSW01_03150 0.69 -1.1
621,694 + CSW01_03150 0.69 +0.6
621,694 + CSW01_03150 0.69 -0.0
621,694 + CSW01_03150 0.69 +0.7
621,694 + CSW01_03150 0.69 -0.6
621,765 - CSW01_03150 0.77 +0.1
621,790 - CSW01_03150 0.80 +0.1
621,801 + CSW01_03150 0.81 +0.0
621,819 - CSW01_03150 0.83 +0.0
621,842 + CSW01_03150 0.86 +0.1
621,953 + +0.1
622,028 - -0.6
622,096 + CSW01_03155 0.12 +0.9
622,106 - CSW01_03155 0.14 +1.4
622,175 + CSW01_03155 0.30 -0.5
622,240 - CSW01_03155 0.44 +0.1
622,242 + CSW01_03155 0.45 +0.2
622,242 + CSW01_03155 0.45 -0.8
622,242 + CSW01_03155 0.45 -0.4
622,242 + CSW01_03155 0.45 -0.1
622,242 + CSW01_03155 0.45 -1.3
622,242 + CSW01_03155 0.45 +0.6
622,250 - CSW01_03155 0.47 -0.9
622,250 - CSW01_03155 0.47 -1.7
622,250 - CSW01_03155 0.47 -0.9
622,250 - CSW01_03155 0.47 -1.0
622,250 - CSW01_03155 0.47 -0.3
622,250 - CSW01_03155 0.47 +0.4
622,250 - CSW01_03155 0.47 +0.6
622,250 - CSW01_03155 0.47 -1.1
622,250 - CSW01_03155 0.47 +0.8
622,250 - CSW01_03155 0.47 +0.2
622,309 - CSW01_03155 0.60 -2.0
622,364 + CSW01_03155 0.72 -0.5
622,400 + CSW01_03155 0.80 -0.5
622,402 + CSW01_03155 0.81 -0.3
622,410 - CSW01_03155 0.82 +0.2
622,435 + CSW01_03155 0.88 -0.4
622,646 - -0.2
622,686 + -0.0
622,686 + -0.6
622,694 - CSW01_03160 0.11 -0.1
622,737 + CSW01_03160 0.16 -1.2
622,749 + CSW01_03160 0.18 +0.2
622,803 - CSW01_03160 0.25 +0.9
622,833 + CSW01_03160 0.29 -0.2
622,833 + CSW01_03160 0.29 -0.1
622,848 + CSW01_03160 0.30 -0.3
622,856 + CSW01_03160 0.32 +0.1
622,864 - CSW01_03160 0.33 +0.1
622,891 + CSW01_03160 0.36 -0.3
622,908 + CSW01_03160 0.38 -0.1
622,945 + CSW01_03160 0.43 -0.1
622,953 - CSW01_03160 0.44 -0.7
623,010 + CSW01_03160 0.51 +0.2
623,017 + CSW01_03160 0.52 +0.3
623,018 - CSW01_03160 0.53 +0.8
623,040 - CSW01_03160 0.55 -0.1
623,040 - CSW01_03160 0.55 -0.3
623,047 + CSW01_03160 0.56 -1.8
623,088 + CSW01_03160 0.62 -1.6
623,096 - CSW01_03160 0.63 -0.0
623,127 + CSW01_03160 0.67 +0.2
623,127 + CSW01_03160 0.67 -0.1
623,127 + CSW01_03160 0.67 +0.4
623,127 + CSW01_03160 0.67 -0.9
623,127 + CSW01_03160 0.67 -0.6
623,135 - CSW01_03160 0.68 +0.2
623,143 + CSW01_03160 0.69 -0.0
623,143 + CSW01_03160 0.69 +1.1
623,194 + CSW01_03160 0.75 -2.1
623,199 + CSW01_03160 0.76 +0.2
623,199 + CSW01_03160 0.76 -1.1
623,207 - CSW01_03160 0.77 +0.2
623,231 - CSW01_03160 0.80 -1.0
623,232 + CSW01_03160 0.80 -0.6
623,241 + CSW01_03160 0.81 -2.1
623,324 + -0.0
623,362 - -0.1
623,381 + -0.3
623,451 + -0.6
623,461 + +0.4
623,461 + +0.4
623,461 + +0.2
623,461 + -0.8
623,461 + -0.6
623,461 + +1.0
623,461 + +0.1
623,469 - -0.1
623,469 - -0.0
623,469 - -0.6
623,469 - -0.6
623,469 - -0.3
623,469 - -0.8
623,469 - +0.4
623,469 - +0.5
623,469 - -0.1
623,469 - -0.6
623,484 + +1.6
623,520 + +0.5
623,664 + -0.4
623,706 - -0.6
623,716 - +0.2
623,716 - -0.6
623,716 - -0.8
623,726 - -0.8
623,732 - CSW01_03165 0.10 -0.2
623,766 + CSW01_03165 0.13 +1.2
623,766 + CSW01_03165 0.13 +1.1
623,774 - CSW01_03165 0.13 -0.4
623,791 + CSW01_03165 0.15 -0.9
623,814 + CSW01_03165 0.16 -1.0
623,814 + CSW01_03165 0.16 +0.4
623,822 - CSW01_03165 0.17 +0.9
623,822 - CSW01_03165 0.17 -0.2
623,914 + CSW01_03165 0.24 -0.1
623,914 + CSW01_03165 0.24 +0.2
623,914 + CSW01_03165 0.24 -0.8
623,922 - CSW01_03165 0.24 -1.2
623,922 - CSW01_03165 0.24 +0.6
623,938 + CSW01_03165 0.25 -0.6
623,938 + CSW01_03165 0.25 +0.2
623,938 + CSW01_03165 0.25 -0.1
623,938 + CSW01_03165 0.25 +0.1
623,938 + CSW01_03165 0.25 +0.9
623,946 - CSW01_03165 0.26 +0.3
623,946 - CSW01_03165 0.26 -0.2
623,946 - CSW01_03165 0.26 -0.0
623,946 - CSW01_03165 0.26 -0.4
623,946 - CSW01_03165 0.26 -0.0
623,970 - CSW01_03165 0.28 -0.0
623,977 - CSW01_03165 0.28 -0.0
623,985 + CSW01_03165 0.29 -0.4
623,985 + CSW01_03165 0.29 -0.1
623,985 + CSW01_03165 0.29 +0.4
623,985 + CSW01_03165 0.29 +1.3
623,993 - CSW01_03165 0.29 +0.4
623,993 - CSW01_03165 0.29 -0.8
623,993 - CSW01_03165 0.29 +0.8
623,993 - CSW01_03165 0.29 +0.2
624,032 + CSW01_03165 0.32 -0.3
624,045 + CSW01_03165 0.33 +0.5
624,112 - CSW01_03165 0.38 +0.0
624,123 + CSW01_03165 0.39 +0.1
624,154 - CSW01_03165 0.41 +0.6
624,180 + CSW01_03165 0.43 +1.2
624,202 - CSW01_03165 0.45 +0.2
624,297 + CSW01_03165 0.52 -0.7
624,305 - CSW01_03165 0.53 +0.7
624,306 + CSW01_03165 0.53 -1.4
624,306 + CSW01_03165 0.53 -0.2
624,306 + CSW01_03165 0.53 -0.2
624,314 - CSW01_03165 0.53 -0.2
624,362 + CSW01_03165 0.57 +0.1
624,370 - CSW01_03165 0.57 +0.1
624,370 - CSW01_03165 0.57 -0.4
624,380 - CSW01_03165 0.58 +0.3

Or see this region's nucleotide sequence