Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02800

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02790 and CSW01_02795 overlap by 4 nucleotidesCSW01_02795 and CSW01_02800 are separated by 108 nucleotidesCSW01_02800 and CSW01_02805 overlap by 4 nucleotidesCSW01_02805 and CSW01_02810 overlap by 4 nucleotides CSW01_02790: CSW01_02790 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 557,103 to 557,609 _02790 CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409 _02795 CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808 _02800 CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503 _02805 CSW01_02810: CSW01_02810 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 559,500 to 559,976 _02810 Position (kb) 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 557.546 kb on + strand, within CSW01_02790at 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.639 kb on + strandat 557.645 kb on + strandat 557.710 kb on - strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.725 kb on - strand, within CSW01_02795at 557.771 kb on + strand, within CSW01_02795at 557.878 kb on + strand, within CSW01_02795at 557.924 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.972 kb on - strand, within CSW01_02795at 557.987 kb on - strand, within CSW01_02795at 558.005 kb on - strand, within CSW01_02795at 558.013 kb on + strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.120 kb on + strand, within CSW01_02795at 558.132 kb on + strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.145 kb on - strand, within CSW01_02795at 558.224 kb on + strand, within CSW01_02795at 558.224 kb on - strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.269 kb on + strand, within CSW01_02795at 558.293 kb on + strand, within CSW01_02795at 558.383 kb on - strandat 558.383 kb on - strandat 558.506 kb on - strandat 558.515 kb on + strandat 558.789 kb on + strandat 558.802 kb on + strandat 558.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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557,546 + CSW01_02790 0.87 +1.1
557,563 + +0.6
557,563 + +0.4
557,563 + -0.3
557,563 + -0.9
557,571 - +2.3
557,571 - -0.7
557,571 - -2.2
557,571 - +0.3
557,571 - -0.2
557,571 - -1.0
557,639 + -0.4
557,645 + +0.8
557,710 - CSW01_02795 0.13 +0.1
557,717 + CSW01_02795 0.14 -0.2
557,717 + CSW01_02795 0.14 +0.2
557,717 + CSW01_02795 0.14 -0.0
557,725 - CSW01_02795 0.15 +0.1
557,771 + CSW01_02795 0.21 +0.2
557,878 + CSW01_02795 0.34 -0.5
557,924 + CSW01_02795 0.40 +0.1
557,943 + CSW01_02795 0.42 -0.0
557,943 + CSW01_02795 0.42 -0.3
557,951 - CSW01_02795 0.43 -1.0
557,951 - CSW01_02795 0.43 -0.1
557,951 - CSW01_02795 0.43 +0.1
557,972 - CSW01_02795 0.46 -0.5
557,987 - CSW01_02795 0.47 +0.6
558,005 - CSW01_02795 0.50 +1.5
558,013 + CSW01_02795 0.51 -0.3
558,021 - CSW01_02795 0.52 -0.1
558,021 - CSW01_02795 0.52 +1.3
558,021 - CSW01_02795 0.52 -0.1
558,120 + CSW01_02795 0.64 +0.6
558,132 + CSW01_02795 0.65 -0.9
558,140 - CSW01_02795 0.66 +1.3
558,140 - CSW01_02795 0.66 +0.5
558,145 - CSW01_02795 0.67 +0.0
558,224 + CSW01_02795 0.77 -0.1
558,224 - CSW01_02795 0.77 +1.5
558,242 + CSW01_02795 0.79 +0.1
558,242 + CSW01_02795 0.79 -0.0
558,242 + CSW01_02795 0.79 -0.0
558,242 + CSW01_02795 0.79 +0.3
558,250 - CSW01_02795 0.80 +0.3
558,250 - CSW01_02795 0.80 -0.2
558,269 + CSW01_02795 0.82 +1.0
558,293 + CSW01_02795 0.85 -0.5
558,383 - +0.0
558,383 - -0.7
558,506 - +0.2
558,515 + -1.2
558,789 + +0.3
558,802 + +0.0
558,807 + +0.1

Or see this region's nucleotide sequence